Wall clock time and date at job start Tue Mar 31 2020 13:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00040 * 2 1 4 4 C 1.52998 * 109.46735 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47660 * 54.99671 * 4 3 2 6 6 C 1.53001 * 109.47216 * 294.99219 * 4 3 2 7 7 C 1.50708 * 109.46642 * 174.99700 * 4 3 2 8 8 O 1.21283 * 119.99859 * 359.97438 * 7 4 3 9 9 N 1.34780 * 119.99998 * 179.97438 * 7 4 3 10 10 C 1.46499 * 120.00025 * 179.97438 * 9 7 4 11 11 C 1.50700 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.40076 * 126.12208 * 259.68779 * 11 10 9 13 13 N 1.31014 * 108.25373 * 179.85394 * 12 11 10 14 14 N 1.39749 * 108.17536 * 0.60880 * 13 12 11 15 15 C 1.34638 * 126.12386 * 80.00149 * 11 10 9 16 16 C 1.51029 * 127.91364 * 359.65315 * 15 11 10 17 17 N 1.47504 * 107.00301 * 169.53063 * 16 15 11 18 18 C 1.36944 * 121.00712 * 222.90277 * 17 16 15 19 19 H 1.07997 * 119.99560 * 155.90868 * 18 17 16 20 20 C 1.38805 * 119.99982 * 335.90444 * 18 17 16 21 21 N 1.31616 * 120.00599 * 344.47019 * 20 18 17 22 22 Si 1.86804 * 119.99725 * 164.46661 * 20 18 17 23 23 H 1.48499 * 109.46995 * 59.99929 * 22 20 18 24 24 H 1.48502 * 109.47270 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47162 * 300.00030 * 22 20 18 26 26 C 1.47083 * 117.97893 * 42.92173 * 17 16 15 27 27 C 1.46552 * 127.32296 * 179.18864 * 14 13 12 28 28 H 1.09002 * 109.46767 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47349 * 300.00249 * 1 2 3 30 30 H 1.09003 * 109.46495 * 60.00759 * 1 2 3 31 31 H 1.08997 * 109.47258 * 59.99209 * 3 2 1 32 32 H 1.09002 * 109.46253 * 299.99392 * 3 2 1 33 33 H 1.08999 * 109.46876 * 60.00259 * 6 4 3 34 34 H 1.08998 * 109.47247 * 180.02562 * 6 4 3 35 35 H 1.09003 * 109.47331 * 300.00804 * 6 4 3 36 36 H 0.97001 * 119.99395 * 359.97438 * 9 7 4 37 37 H 1.08997 * 109.47030 * 300.00222 * 10 9 7 38 38 H 1.09003 * 109.46884 * 60.00161 * 10 9 7 39 39 H 1.08001 * 125.87134 * 0.04517 * 12 11 10 40 40 H 1.09000 * 109.94905 * 288.89816 * 16 15 11 41 41 H 1.09002 * 109.94894 * 50.15213 * 16 15 11 42 42 H 0.96995 * 120.00768 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.51207 * 56.34347 * 26 17 16 44 44 H 1.09000 * 109.51167 * 176.50507 * 26 17 16 45 45 H 1.08996 * 109.51236 * 41.59013 * 27 14 13 46 46 H 1.09001 * 109.50315 * 281.45469 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8515 0.5681 -0.8408 6 6 3.9952 0.5369 1.3084 7 6 4.1480 2.5559 -0.1233 8 8 3.4349 3.5336 -0.2046 9 7 5.4884 2.6959 -0.1437 10 6 6.0839 4.0290 -0.2647 11 6 7.5862 3.9099 -0.2640 12 6 8.4325 4.1433 0.8275 13 7 9.6670 3.9357 0.4414 14 7 9.6469 3.5778 -0.9094 15 6 8.3557 3.5660 -1.3139 16 6 7.9120 3.2163 -2.7146 17 7 9.1258 3.1640 -3.5510 18 6 9.1437 3.7170 -4.8037 19 1 10.0802 4.0245 -5.2449 20 6 7.9580 3.8822 -5.5064 21 7 6.8715 3.2462 -5.1227 22 14 7.9046 5.0072 -6.9967 23 1 8.8632 4.5187 -8.0202 24 1 6.5325 5.0114 -7.5648 25 1 8.2754 6.3862 -6.5894 26 6 10.3162 2.4995 -2.9990 27 6 10.7968 3.2698 -1.7642 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 1.6885 1.8465 0.8899 32 1 1.6886 1.8462 -0.8901 33 1 3.5521 -0.4549 1.3980 34 1 5.0818 0.4512 1.3090 35 1 3.6791 1.1534 2.1499 36 1 6.0587 1.9140 -0.0783 37 1 5.7567 4.4898 -1.1967 38 1 5.7675 4.6459 0.5763 39 1 8.1206 4.4401 1.8180 40 1 7.4172 2.2451 -2.7164 41 1 7.2332 3.9813 -3.0916 42 1 6.0430 3.3613 -5.6139 43 1 10.0642 1.4778 -2.7154 44 1 11.1064 2.4856 -3.7496 45 1 11.5098 2.6600 -1.2095 46 1 11.2762 4.1973 -2.0774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128269539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:07 Heat of formation + Delta-G solvation = 14.615319 kcal Electronic energy + Delta-G solvation = -27788.080323 eV Core-core repulsion = 23908.205159 eV Total energy + Delta-G solvation = -3879.875164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.01260 -39.70950 -37.82517 -36.32714 -34.79594 -33.72920 -32.94633 -31.22135 -30.23346 -28.83346 -27.44586 -26.15574 -25.80622 -24.96349 -23.56425 -22.54712 -21.74865 -20.19724 -19.73534 -18.41809 -17.39752 -16.73807 -16.38260 -16.08566 -15.89412 -15.54823 -15.27760 -14.99648 -14.81606 -14.48497 -13.93655 -13.76982 -13.65776 -13.39134 -13.23906 -13.17203 -12.77074 -12.50275 -12.40372 -12.22614 -11.72603 -11.66017 -11.61497 -11.37570 -11.28712 -11.00228 -10.92319 -10.88049 -10.75393 -10.22684 -10.19940 -10.09860 -9.76110 -9.64696 -8.92062 -8.75368 -8.56695 -7.94460 -7.09992 -6.02689 -3.45598 2.40185 2.84471 2.88077 2.99727 3.28669 3.36320 3.36428 3.43188 4.05936 4.30525 4.68730 4.85601 4.93520 5.00105 5.04922 5.18137 5.19426 5.20685 5.33918 5.36263 5.49505 5.50638 5.53871 5.56966 5.59854 5.62561 5.71175 5.75341 5.84420 5.90310 6.08875 6.14601 6.20938 6.35942 6.40268 6.52672 6.70392 6.89536 7.02426 7.06908 7.13011 7.55563 7.58799 7.76807 8.07975 8.21801 8.43298 8.90611 9.53056 10.05508 11.08236 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010643 B = 0.003828 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.113649 B = 7313.227706 C = 9104.560538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.081 3.919 4 C -0.111 4.111 5 H 0.107 0.893 6 C -0.138 4.138 7 C 0.521 3.479 8 O -0.549 6.549 9 N -0.714 5.714 10 C 0.210 3.790 11 C -0.289 4.289 12 C 0.056 3.944 13 N -0.318 5.318 14 N -0.358 5.358 15 C 0.120 3.880 16 C 0.231 3.769 17 N -0.596 5.596 18 C -0.266 4.266 19 H 0.073 0.927 20 C 0.009 3.991 21 N -0.903 5.903 22 Si 0.909 3.091 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.282 1.282 26 C 0.129 3.871 27 C 0.113 3.887 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.400 0.600 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.175 0.825 40 H 0.057 0.943 41 H 0.109 0.891 42 H 0.260 0.740 43 H 0.036 0.964 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 -5.484 11.409 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.004 3.996 4 C -0.133 4.133 5 H 0.126 0.874 6 C -0.196 4.196 7 C 0.307 3.693 8 O -0.427 6.427 9 N -0.365 5.365 10 C 0.086 3.914 11 C -0.301 4.301 12 C -0.130 4.130 13 N -0.138 5.138 14 N -0.139 5.139 15 C -0.012 4.012 16 C 0.104 3.896 17 N -0.319 5.319 18 C -0.394 4.394 19 H 0.091 0.909 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.738 3.262 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.208 1.208 26 C 0.001 3.999 27 C -0.010 4.010 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.235 0.765 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.192 0.808 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.929 -4.959 11.497 13.123 hybrid contribution -0.697 0.491 -0.942 1.271 sum -4.626 -4.469 10.555 12.360 Atomic orbital electron populations 1.22710 0.80948 1.02515 1.00108 1.87800 1.19706 1.28140 1.95536 1.22226 0.91715 0.83985 1.01659 1.21179 0.95132 0.95186 1.01771 0.87447 1.21713 1.01341 1.01453 0.95094 1.20268 0.82531 0.90475 0.76031 1.90690 1.61082 1.40729 1.50220 1.46166 1.06101 1.10446 1.73788 1.19317 0.86798 0.83238 1.02030 1.19423 0.95417 1.21209 0.94047 1.23673 0.90084 1.00143 0.99141 1.77172 1.21415 1.23089 0.92105 1.48504 1.06064 1.52346 1.06975 1.22589 0.84501 0.95186 0.98917 1.19922 0.89378 1.01303 0.78992 1.44196 1.08034 1.64714 1.14939 1.19117 0.94088 1.34661 0.91559 0.90911 1.25029 0.96620 0.99160 0.98196 1.69922 1.01050 1.41782 1.41894 0.86272 0.77011 0.80821 0.82092 1.20691 1.21334 1.20823 1.21273 0.92287 0.93786 0.92594 1.22553 0.85804 1.01353 0.91304 0.89726 0.94161 0.93964 0.92625 0.92139 0.90854 0.92032 0.92357 0.76540 0.90816 0.91329 0.80768 0.92571 0.87314 0.92968 0.94599 0.89719 0.90185 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.67 10.24 -35.23 -0.36 -5.03 16 3 C 0.08 1.00 4.67 37.16 0.17 1.17 16 4 C -0.11 -1.35 2.96 -91.77 -0.27 -1.63 16 5 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 6 C -0.14 -1.38 8.99 37.16 0.33 -1.04 16 7 C 0.52 7.79 7.16 -10.98 -0.08 7.71 16 8 O -0.55 -10.05 15.92 5.55 0.09 -9.96 16 9 N -0.71 -10.22 5.44 -61.47 -0.33 -10.55 16 10 C 0.21 3.32 5.95 -5.19 -0.03 3.29 16 11 C -0.29 -4.92 5.46 -105.21 -0.57 -5.49 16 12 C 0.06 0.90 11.97 -17.21 -0.21 0.70 16 13 N -0.32 -5.79 12.61 30.70 0.39 -5.41 16 14 N -0.36 -6.77 4.03 -56.93 -0.23 -7.00 16 15 C 0.12 2.34 6.71 -82.17 -0.55 1.79 16 16 C 0.23 5.13 5.11 -4.48 -0.02 5.11 16 17 N -0.60 -13.74 3.01 -172.97 -0.52 -14.26 16 18 C -0.27 -6.74 9.66 -15.06 -0.15 -6.89 16 19 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 20 C 0.01 0.25 5.00 -17.43 -0.09 0.16 16 21 N -0.90 -24.41 11.07 55.49 0.61 -23.79 16 22 Si 0.91 20.73 29.58 -169.99 -5.03 15.70 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.13 2.38 6.49 -3.59 -0.02 2.36 16 27 C 0.11 1.91 7.44 -3.88 -0.03 1.88 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.81 7.96 -51.93 -0.41 0.40 16 33 H 0.07 0.70 7.82 -51.93 -0.41 0.29 16 34 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.40 5.18 7.88 -40.82 -0.32 4.86 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.18 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.11 2.74 6.46 -51.93 -0.34 2.40 16 42 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16 45 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -30.59 379.38 -7.39 -37.98 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -7.33 Total: 6.07 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -0.40 Total: 10.53 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.08 Total: -61.01 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.27 Total: -14.98 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.59 -7.39 -37.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128269539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.598 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds