Wall clock time and date at job start Tue Mar 31 2020 13:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47020 * 2 1 4 4 C 1.53006 * 109.47101 * 240.00383 * 2 1 3 5 5 C 1.52998 * 109.46867 * 176.94446 * 4 2 1 6 6 H 1.08996 * 109.47190 * 56.11865 * 5 4 2 7 7 C 1.52995 * 109.47540 * 296.11244 * 5 4 2 8 8 N 1.46502 * 109.46691 * 176.11389 * 5 4 2 9 9 C 1.34784 * 119.99893 * 208.81714 * 8 5 4 10 10 O 1.21669 * 119.99855 * 4.11793 * 9 8 5 11 11 C 1.46815 * 119.99660 * 184.11740 * 9 8 5 12 12 C 1.36353 * 125.84318 * 172.60861 * 11 9 8 13 13 C 1.41302 * 107.00691 * 179.85206 * 12 11 9 14 14 C 1.47394 * 126.46461 * 180.19329 * 13 12 11 15 15 N 1.34774 * 120.00064 * 180.28082 * 14 13 12 16 16 O 1.21614 * 119.99773 * 0.27888 * 14 13 12 17 17 C 1.38207 * 107.07698 * 0.40770 * 13 12 11 18 18 N 1.34268 * 108.39567 * 359.74980 * 17 13 12 19 19 C 1.46493 * 125.39186 * 179.97438 * 18 17 13 20 20 N 1.46500 * 109.47290 * 120.00249 * 2 1 3 21 21 C 1.36934 * 119.99833 * 271.10420 * 20 2 1 22 22 H 1.07995 * 120.00176 * 5.23140 * 21 20 2 23 23 C 1.38814 * 119.99743 * 185.22202 * 21 20 2 24 24 N 1.31619 * 120.00079 * 5.05283 * 23 21 20 25 25 Si 1.86803 * 119.99919 * 185.32538 * 23 21 20 26 26 H 1.48497 * 109.47162 * 179.72778 * 25 23 21 27 27 H 1.48504 * 109.46919 * 299.72664 * 25 23 21 28 28 H 1.48504 * 109.46870 * 59.72656 * 25 23 21 29 29 H 1.09003 * 109.47009 * 299.99626 * 1 2 3 30 30 H 1.08997 * 109.47872 * 59.99769 * 1 2 3 31 31 H 1.09008 * 109.47020 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46803 * 296.94751 * 4 2 1 33 33 H 1.09000 * 109.46853 * 56.94807 * 4 2 1 34 34 H 1.09003 * 109.47124 * 180.02562 * 7 5 4 35 35 H 1.08996 * 109.47386 * 300.00501 * 7 5 4 36 36 H 1.09003 * 109.47268 * 60.00351 * 7 5 4 37 37 H 0.97000 * 120.00277 * 28.82428 * 8 5 4 38 38 H 1.07998 * 126.49816 * 359.95834 * 12 11 9 39 39 H 0.96995 * 120.00274 * 0.02562 * 15 14 13 40 40 H 0.97005 * 119.99584 * 180.02562 * 15 14 13 41 41 H 1.07993 * 125.80613 * 179.72256 * 17 13 12 42 42 H 1.08997 * 109.47470 * 256.82531 * 19 18 17 43 43 H 1.08997 * 109.47583 * 16.83058 * 19 18 17 44 44 H 1.09003 * 109.47196 * 136.82430 * 19 18 17 45 45 H 0.96993 * 119.99691 * 91.11751 * 20 2 1 46 46 H 0.97003 * 119.99746 * 355.27235 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5680 -0.6549 -1.2883 6 1 3.9735 -1.0742 -0.3676 7 6 4.0121 0.8029 -1.4237 8 7 4.0610 -1.4240 -2.4337 9 6 5.2777 -2.0018 -2.3840 10 8 5.9352 -1.9484 -1.3616 11 6 5.8095 -2.6956 -3.5635 12 6 7.0714 -3.1952 -3.6945 13 6 7.1533 -3.7797 -4.9783 14 6 8.3290 -4.4498 -5.5624 15 7 8.2644 -4.9595 -6.8084 16 8 9.3574 -4.5428 -4.9199 17 6 5.9245 -3.6004 -5.5851 18 7 5.1209 -2.9481 -4.7298 19 6 3.7320 -2.5650 -4.9951 20 7 2.0183 -0.6907 1.1961 21 6 2.2250 0.0096 2.3546 22 1 1.9488 1.0520 2.4121 23 6 2.7894 -0.6206 3.4552 24 7 3.2171 -1.8614 3.3554 25 14 2.9349 0.2898 5.0798 26 1 3.5618 -0.5991 6.0909 27 1 3.7756 1.5000 4.8955 28 1 1.5831 0.6921 5.5446 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7220 -1.7634 -1.2224 33 1 1.6326 -0.2398 -2.1384 34 1 5.1007 0.8500 -1.4520 35 1 3.6066 1.2222 -2.3445 36 1 3.6453 1.3751 -0.5716 37 1 3.5119 -1.5172 -3.2278 38 1 7.8586 -3.1537 -2.9562 39 1 7.4443 -4.8849 -7.3210 40 1 9.0381 -5.4008 -7.1926 41 1 5.6564 -3.9286 -6.5783 42 1 3.6857 -1.4997 -5.2210 43 1 3.3543 -3.1334 -5.8449 44 1 3.1225 -2.7770 -4.1166 45 1 2.1954 -1.6438 1.1674 46 1 3.0762 -2.3584 2.5344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134902657.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:10 Heat of formation + Delta-G solvation = -14.008715 kcal Electronic energy + Delta-G solvation = -27281.565189 eV Core-core repulsion = 23400.448794 eV Total energy + Delta-G solvation = -3881.116395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.98479 -39.50089 -38.87953 -37.05328 -34.95265 -33.96388 -33.33278 -32.41636 -30.81611 -29.22639 -28.30779 -27.45536 -26.41281 -23.93588 -23.33953 -22.87731 -21.11559 -20.48744 -19.89812 -19.48586 -18.47977 -17.39801 -17.11965 -16.28415 -16.18905 -16.01687 -15.72648 -14.85962 -14.65751 -14.62326 -14.57533 -14.30689 -13.87599 -13.58373 -13.49178 -13.32108 -13.00841 -12.81401 -12.65512 -12.48244 -12.26026 -11.95526 -11.75775 -11.35954 -11.01717 -10.71853 -10.61186 -10.45245 -10.30220 -10.18086 -9.93348 -9.92111 -9.86529 -9.19779 -9.16284 -9.00166 -8.80503 -8.59964 -6.98659 -6.02267 -3.03829 1.17980 1.64731 2.22529 3.09669 3.19324 3.42682 3.46547 3.55949 3.59688 3.77505 4.09356 4.25107 4.46665 4.58305 4.72265 4.76840 4.83165 4.99587 5.10678 5.24261 5.46651 5.61128 5.62823 5.66890 5.74420 5.75509 5.92622 5.95509 6.06671 6.17937 6.20990 6.30870 6.38374 6.44981 6.49017 6.53825 6.57332 6.64668 6.74433 6.81722 6.95889 7.13048 7.52415 7.86396 8.12161 8.26389 8.82237 9.28280 10.14152 10.29051 11.45229 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.002749 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.410685 B =10182.538619 C =11279.895442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.178 3.822 3 H 0.057 0.943 4 C -0.131 4.131 5 C 0.140 3.860 6 H 0.110 0.890 7 C -0.157 4.157 8 N -0.733 5.733 9 C 0.582 3.418 10 O -0.510 6.510 11 C -0.053 4.053 12 C -0.047 4.047 13 C -0.238 4.238 14 C 0.595 3.405 15 N -0.857 5.857 16 O -0.543 6.543 17 C 0.063 3.937 18 N -0.416 5.416 19 C 0.048 3.952 20 N -0.733 5.733 21 C -0.332 4.332 22 H 0.063 0.937 23 C -0.043 4.043 24 N -0.939 5.939 25 Si 1.077 2.923 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.297 1.297 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.388 0.612 38 H 0.160 0.840 39 H 0.397 0.603 40 H 0.403 0.597 41 H 0.177 0.823 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.365 0.635 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.033 -2.370 -27.414 27.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.068 3.932 3 H 0.075 0.925 4 C -0.170 4.170 5 C 0.036 3.964 6 H 0.128 0.872 7 C -0.215 4.215 8 N -0.388 5.388 9 C 0.367 3.633 10 O -0.384 6.384 11 C -0.163 4.163 12 C -0.072 4.072 13 C -0.248 4.248 14 C 0.382 3.618 15 N -0.420 5.420 16 O -0.420 6.420 17 C -0.078 4.078 18 N -0.090 5.090 19 C -0.093 4.093 20 N -0.376 5.376 21 C -0.463 4.463 22 H 0.081 0.919 23 C -0.241 4.241 24 N -0.584 5.584 25 Si 0.908 3.092 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.224 1.224 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.225 0.775 38 H 0.178 0.822 39 H 0.225 0.775 40 H 0.233 0.767 41 H 0.194 0.806 42 H 0.107 0.893 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.199 0.801 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.193 -1.999 -24.473 24.555 hybrid contribution -1.184 -0.360 -2.613 2.891 sum -0.990 -2.358 -27.086 27.207 Atomic orbital electron populations 1.22438 0.99292 1.00657 1.00056 1.20175 0.91693 0.95806 0.85540 0.92520 1.22177 0.93774 1.01442 0.99579 1.21111 0.94077 0.91453 0.89715 0.87201 1.22145 1.01444 0.96115 1.01785 1.46604 1.17907 1.54359 1.19929 1.17057 0.81750 0.78449 0.86012 1.90937 1.58285 1.59285 1.29941 1.20369 0.94257 1.12921 0.88720 1.21124 0.94928 0.95396 0.95800 1.19541 0.94394 1.13060 0.97824 1.17396 0.86672 0.76941 0.80827 1.43670 1.18709 1.62609 1.17052 1.90843 1.31631 1.58590 1.60933 1.22303 0.90225 0.99109 0.96122 1.43758 1.11217 1.41855 1.12217 1.22488 0.79374 1.02977 1.04457 1.42424 1.79887 1.07443 1.07796 1.19967 1.39420 0.95558 0.91397 0.91935 1.25726 0.98109 0.98323 1.01922 1.70863 1.47051 1.10659 1.29858 0.83286 0.75689 0.74447 0.75755 1.21092 1.22259 1.22447 0.92659 0.94493 0.93767 0.91996 0.92192 0.92763 0.93538 0.90345 0.77456 0.82239 0.77539 0.76651 0.80558 0.89266 0.87997 0.88784 0.80138 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.52 37.16 0.35 -2.42 16 2 C 0.18 3.33 2.73 -67.93 -0.19 3.15 16 3 H 0.06 1.09 6.29 -51.92 -0.33 0.77 16 4 C -0.13 -1.93 4.48 -26.73 -0.12 -2.05 16 5 C 0.14 2.29 2.67 -67.93 -0.18 2.11 16 6 H 0.11 2.41 6.84 -51.93 -0.36 2.06 16 7 C -0.16 -2.44 9.25 37.16 0.34 -2.10 16 8 N -0.73 -9.85 4.90 -55.07 -0.27 -10.12 16 9 C 0.58 9.44 7.76 -12.79 -0.10 9.34 16 10 O -0.51 -10.95 16.44 5.22 0.09 -10.87 16 11 C -0.05 -0.69 6.82 -82.41 -0.56 -1.26 16 12 C -0.05 -0.66 10.38 -39.10 -0.41 -1.07 16 13 C -0.24 -2.60 6.13 -105.02 -0.64 -3.24 16 14 C 0.59 6.70 8.09 -12.53 -0.10 6.60 16 15 N -0.86 -5.00 8.86 30.43 0.27 -4.73 16 16 O -0.54 -8.76 17.76 5.27 0.09 -8.67 16 17 C 0.06 0.44 10.85 -16.50 -0.18 0.26 16 18 N -0.42 -3.45 3.12 -120.14 -0.38 -3.83 16 19 C 0.05 0.20 9.34 59.84 0.56 0.76 16 20 N -0.73 -17.75 4.36 -53.42 -0.23 -17.99 16 21 C -0.33 -9.23 9.93 -15.06 -0.15 -9.38 16 22 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 23 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 16 24 N -0.94 -29.69 13.69 55.49 0.76 -28.93 16 25 Si 1.08 26.48 29.92 -169.99 -5.09 21.39 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 27 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 1.34 6.47 -51.93 -0.34 1.01 16 37 H 0.39 3.66 4.24 -40.82 -0.17 3.48 16 38 H 0.16 2.50 8.06 -52.49 -0.42 2.07 16 39 H 0.40 0.89 7.74 -40.82 -0.32 0.57 16 40 H 0.40 1.93 8.93 -40.82 -0.36 1.56 16 41 H 0.18 0.32 7.44 -52.49 -0.39 -0.07 16 42 H 0.09 0.27 7.87 -51.93 -0.41 -0.14 16 43 H 0.10 0.09 8.08 -51.93 -0.42 -0.33 16 44 H 0.09 0.45 6.44 -51.93 -0.33 0.12 16 45 H 0.37 9.37 6.73 -40.82 -0.27 9.10 16 46 H 0.26 8.00 6.81 -40.82 -0.28 7.72 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -39.83 380.61 -7.05 -46.88 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -6.57 Total: 11.76 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.47 Total: -0.65 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: 0.15 Total: -65.59 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.18 Total: -19.54 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -5.09 Total: 21.39 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -39.83 -7.05 -46.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134902657.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.874 kcal (2) G-P(sol) polarization free energy of solvation -39.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds