Wall clock time and date at job start Tue Mar 31 2020 13:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47020 * 2 1 4 4 C 1.53006 * 109.47101 * 240.00383 * 2 1 3 5 5 C 1.52998 * 109.46867 * 176.94446 * 4 2 1 6 6 H 1.08996 * 109.47190 * 56.11865 * 5 4 2 7 7 C 1.52995 * 109.47540 * 296.11244 * 5 4 2 8 8 N 1.46502 * 109.46691 * 176.11389 * 5 4 2 9 9 C 1.34784 * 119.99893 * 208.81714 * 8 5 4 10 10 O 1.21669 * 119.99855 * 4.11793 * 9 8 5 11 11 C 1.46815 * 119.99660 * 184.11740 * 9 8 5 12 12 C 1.36353 * 125.84318 * 172.60861 * 11 9 8 13 13 C 1.41302 * 107.00691 * 179.85206 * 12 11 9 14 14 C 1.47394 * 126.46461 * 180.19329 * 13 12 11 15 15 N 1.34774 * 120.00064 * 180.28082 * 14 13 12 16 16 O 1.21614 * 119.99773 * 0.27888 * 14 13 12 17 17 C 1.38207 * 107.07698 * 0.40770 * 13 12 11 18 18 N 1.34268 * 108.39567 * 359.74980 * 17 13 12 19 19 C 1.46493 * 125.39186 * 179.97438 * 18 17 13 20 20 N 1.46500 * 109.47290 * 120.00249 * 2 1 3 21 21 C 1.36934 * 119.99833 * 271.10420 * 20 2 1 22 22 H 1.07995 * 120.00176 * 5.23140 * 21 20 2 23 23 C 1.38814 * 119.99743 * 185.22202 * 21 20 2 24 24 N 1.31619 * 120.00079 * 5.05283 * 23 21 20 25 25 Si 1.86803 * 119.99919 * 185.32538 * 23 21 20 26 26 H 1.48497 * 109.47162 * 179.72778 * 25 23 21 27 27 H 1.48504 * 109.46919 * 299.72664 * 25 23 21 28 28 H 1.48504 * 109.46870 * 59.72656 * 25 23 21 29 29 H 1.09003 * 109.47009 * 299.99626 * 1 2 3 30 30 H 1.08997 * 109.47872 * 59.99769 * 1 2 3 31 31 H 1.09008 * 109.47020 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46803 * 296.94751 * 4 2 1 33 33 H 1.09000 * 109.46853 * 56.94807 * 4 2 1 34 34 H 1.09003 * 109.47124 * 180.02562 * 7 5 4 35 35 H 1.08996 * 109.47386 * 300.00501 * 7 5 4 36 36 H 1.09003 * 109.47268 * 60.00351 * 7 5 4 37 37 H 0.97000 * 120.00277 * 28.82428 * 8 5 4 38 38 H 1.07998 * 126.49816 * 359.95834 * 12 11 9 39 39 H 0.96995 * 120.00274 * 0.02562 * 15 14 13 40 40 H 0.97005 * 119.99584 * 180.02562 * 15 14 13 41 41 H 1.07993 * 125.80613 * 179.72256 * 17 13 12 42 42 H 1.08997 * 109.47470 * 256.82531 * 19 18 17 43 43 H 1.08997 * 109.47583 * 16.83058 * 19 18 17 44 44 H 1.09003 * 109.47196 * 136.82430 * 19 18 17 45 45 H 0.96993 * 119.99691 * 91.11751 * 20 2 1 46 46 H 0.97003 * 119.99746 * 355.27235 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5680 -0.6549 -1.2883 6 1 3.9735 -1.0742 -0.3676 7 6 4.0121 0.8029 -1.4237 8 7 4.0610 -1.4240 -2.4337 9 6 5.2777 -2.0018 -2.3840 10 8 5.9352 -1.9484 -1.3616 11 6 5.8095 -2.6956 -3.5635 12 6 7.0714 -3.1952 -3.6945 13 6 7.1533 -3.7797 -4.9783 14 6 8.3290 -4.4498 -5.5624 15 7 8.2644 -4.9595 -6.8084 16 8 9.3574 -4.5428 -4.9199 17 6 5.9245 -3.6004 -5.5851 18 7 5.1209 -2.9481 -4.7298 19 6 3.7320 -2.5650 -4.9951 20 7 2.0183 -0.6907 1.1961 21 6 2.2250 0.0096 2.3546 22 1 1.9488 1.0520 2.4121 23 6 2.7894 -0.6206 3.4552 24 7 3.2171 -1.8614 3.3554 25 14 2.9349 0.2898 5.0798 26 1 3.5618 -0.5991 6.0909 27 1 3.7756 1.5000 4.8955 28 1 1.5831 0.6921 5.5446 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7220 -1.7634 -1.2224 33 1 1.6326 -0.2398 -2.1384 34 1 5.1007 0.8500 -1.4520 35 1 3.6066 1.2222 -2.3445 36 1 3.6453 1.3751 -0.5716 37 1 3.5119 -1.5172 -3.2278 38 1 7.8586 -3.1537 -2.9562 39 1 7.4443 -4.8849 -7.3210 40 1 9.0381 -5.4008 -7.1926 41 1 5.6564 -3.9286 -6.5783 42 1 3.6857 -1.4997 -5.2210 43 1 3.3543 -3.1334 -5.8449 44 1 3.1225 -2.7770 -4.1166 45 1 2.1954 -1.6438 1.1674 46 1 3.0762 -2.3584 2.5344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134902657.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:09 Heat of formation + Delta-G solvation = -47.842555 kcal Electronic energy + Delta-G solvation = -27283.032334 eV Core-core repulsion = 23400.448794 eV Total energy + Delta-G solvation = -3882.583540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.81941 -40.68918 -39.82983 -38.56770 -36.48389 -34.82473 -34.48767 -33.78381 -32.17029 -30.35686 -29.97853 -28.00508 -27.71359 -25.63967 -24.85743 -23.70043 -22.42012 -21.65643 -20.85472 -20.65327 -19.50805 -19.27525 -17.89277 -17.35165 -16.99194 -16.93306 -16.68733 -16.51511 -16.27064 -15.80426 -15.53488 -15.46232 -15.33455 -14.86039 -14.71319 -14.57465 -14.22611 -13.75531 -13.53817 -13.50228 -13.28718 -13.20381 -13.03955 -12.90166 -12.60315 -12.41801 -12.32010 -11.91771 -11.85549 -11.66084 -11.38295 -11.24460 -11.13608 -10.85443 -10.65034 -10.34234 -9.96022 -9.44125 -9.06312 -8.33794 -5.27063 0.32136 0.72764 1.55002 1.57429 1.65721 1.81313 1.96549 2.10549 2.53405 2.72798 2.74167 3.44100 3.51646 3.66983 3.71358 3.86596 3.92423 4.01857 4.14206 4.20684 4.27235 4.29703 4.42421 4.51145 4.59839 4.64538 4.75084 4.75704 4.86946 4.90048 4.90799 5.01798 5.10001 5.16164 5.33075 5.39797 5.40655 5.54663 5.57747 5.65810 5.95258 6.05438 6.41169 6.52603 6.59416 7.08415 7.15113 7.44861 8.05118 8.17442 9.17556 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.002749 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.410685 B =10182.538619 C =11279.895442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.167 3.833 3 H 0.052 0.948 4 C -0.115 4.115 5 C 0.144 3.856 6 H 0.044 0.956 7 C -0.149 4.149 8 N -0.708 5.708 9 C 0.577 3.423 10 O -0.583 6.583 11 C -0.076 4.076 12 C -0.078 4.078 13 C -0.269 4.269 14 C 0.591 3.409 15 N -0.826 5.826 16 O -0.609 6.609 17 C 0.120 3.880 18 N -0.404 5.404 19 C 0.031 3.969 20 N -0.746 5.746 21 C -0.317 4.317 22 H 0.067 0.933 23 C -0.112 4.112 24 N -0.980 5.980 25 Si 1.122 2.878 26 H -0.299 1.299 27 H -0.280 1.280 28 H -0.274 1.274 29 H 0.031 0.969 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.030 0.970 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.412 0.588 38 H 0.118 0.882 39 H 0.419 0.581 40 H 0.411 0.589 41 H 0.247 0.753 42 H 0.109 0.891 43 H 0.152 0.848 44 H 0.087 0.913 45 H 0.354 0.646 46 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 -1.623 -32.584 32.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.059 3.941 3 H 0.070 0.930 4 C -0.153 4.153 5 C 0.039 3.961 6 H 0.062 0.938 7 C -0.207 4.207 8 N -0.365 5.365 9 C 0.365 3.635 10 O -0.462 6.462 11 C -0.187 4.187 12 C -0.105 4.105 13 C -0.278 4.278 14 C 0.379 3.621 15 N -0.390 5.390 16 O -0.491 6.491 17 C -0.023 4.023 18 N -0.076 5.076 19 C -0.107 4.107 20 N -0.388 5.388 21 C -0.449 4.449 22 H 0.085 0.915 23 C -0.302 4.302 24 N -0.629 5.629 25 Si 0.948 3.052 26 H -0.225 1.225 27 H -0.207 1.207 28 H -0.200 1.200 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.132 0.868 34 H 0.050 0.950 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.255 0.745 38 H 0.136 0.864 39 H 0.251 0.749 40 H 0.243 0.757 41 H 0.263 0.737 42 H 0.127 0.873 43 H 0.170 0.830 44 H 0.105 0.895 45 H 0.185 0.815 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.346 -1.209 -29.792 30.003 hybrid contribution -0.192 -0.573 -1.215 1.357 sum -3.538 -1.782 -31.007 31.259 Atomic orbital electron populations 1.22271 0.97023 1.00940 1.01114 1.20522 0.93084 0.95488 0.85045 0.92962 1.22046 0.91949 1.01711 0.99628 1.20809 0.95239 0.91761 0.88278 0.93769 1.22060 1.00119 0.95423 1.03110 1.46307 1.17243 1.53026 1.19917 1.17551 0.81796 0.77999 0.86108 1.90898 1.60290 1.62083 1.32934 1.19680 0.94556 1.14556 0.89859 1.21044 0.94964 0.97285 0.97169 1.19557 0.96508 1.14676 0.97046 1.17559 0.85866 0.76802 0.81907 1.43357 1.20082 1.60464 1.15055 1.90813 1.33929 1.61386 1.62981 1.23218 0.87517 0.94394 0.97147 1.43986 1.12741 1.40686 1.10234 1.22997 0.76379 1.05257 1.06105 1.42659 1.80187 1.07031 1.08901 1.20316 1.36548 0.95682 0.92356 0.91512 1.27088 0.98996 0.98511 1.05654 1.70980 1.50300 1.12167 1.29403 0.82703 0.76805 0.73655 0.72063 1.22510 1.20668 1.20013 0.95001 0.89996 0.93868 0.91796 0.86768 0.95028 0.89114 0.92240 0.74515 0.86393 0.74855 0.75687 0.73655 0.87290 0.82984 0.89503 0.81486 0.94851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 9.52 71.98 0.69 -4.09 16 2 C 0.17 6.03 2.73 44.99 0.12 6.15 16 3 H 0.05 1.95 6.29 -2.38 -0.01 1.93 16 4 C -0.11 -3.12 4.48 30.60 0.14 -2.99 16 5 C 0.14 4.76 2.67 44.99 0.12 4.88 16 6 H 0.04 2.10 6.84 -2.39 -0.02 2.08 16 7 C -0.15 -4.61 9.25 71.98 0.67 -3.94 16 8 N -0.71 -18.64 4.90 -446.38 -2.19 -20.83 16 9 C 0.58 19.90 7.76 86.49 0.67 20.57 16 10 O -0.58 -27.99 16.44 -4.25 -0.07 -28.06 16 11 C -0.08 -2.04 6.82 40.01 0.27 -1.77 16 12 C -0.08 -2.39 10.38 22.58 0.23 -2.15 16 13 C -0.27 -5.62 6.13 -20.12 -0.12 -5.74 16 14 C 0.59 13.06 8.09 86.65 0.70 13.76 16 15 N -0.83 -7.19 8.86 -175.91 -1.56 -8.75 16 16 O -0.61 -20.96 17.76 -4.07 -0.07 -21.03 16 17 C 0.12 1.08 10.85 84.31 0.91 1.99 16 18 N -0.40 -5.18 3.12 -534.00 -1.67 -6.85 16 19 C 0.03 0.07 9.34 127.77 1.19 1.27 16 20 N -0.75 -37.17 4.36 -322.93 -1.41 -38.58 16 21 C -0.32 -18.04 9.93 84.03 0.83 -17.21 16 22 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 23 C -0.11 -6.77 5.50 84.86 0.47 -6.31 16 24 N -0.98 -65.19 13.69 21.65 0.30 -64.89 16 25 Si 1.12 54.77 29.92 68.60 2.05 56.83 16 26 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 2.05 6.47 -2.39 -0.02 2.04 16 37 H 0.41 6.46 4.24 -92.71 -0.39 6.06 16 38 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 39 H 0.42 -0.34 7.74 -92.71 -0.72 -1.06 16 40 H 0.41 2.92 8.93 -92.70 -0.83 2.09 16 41 H 0.25 -1.32 7.44 -2.91 -0.02 -1.34 16 42 H 0.11 -0.06 7.87 -2.39 -0.02 -0.08 16 43 H 0.15 -1.02 8.08 -2.39 -0.02 -1.04 16 44 H 0.09 0.41 6.44 -2.39 -0.02 0.39 16 45 H 0.35 19.12 6.73 -92.71 -0.62 18.49 16 46 H 0.24 16.13 6.81 -92.71 -0.63 15.50 16 Total: -1.00 -102.62 380.61 0.90 -101.72 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -1.38 Total: 26.01 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 6.90 Total: 4.44 kcal Atomic # 7 Polarization: -133.37 SS G_CDS: -6.53 Total: -139.90 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -0.14 Total: -49.09 kcal Atomic # 14 Polarization: 54.77 SS G_CDS: 2.05 Total: 56.83 kcal Total: -102.62 0.90 -101.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134902657.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.874 kcal (2) G-P(sol) polarization free energy of solvation -102.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds