Wall clock time and date at job start Tue Mar 31 2020 12:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47730 * 2 1 4 4 O 1.42907 * 109.47277 * 119.99980 * 2 1 3 5 5 C 1.50704 * 109.47128 * 239.99676 * 2 1 3 6 6 C 1.35354 * 126.74754 * 124.99862 * 5 2 1 7 7 N 1.35315 * 106.17131 * 179.97438 * 6 5 2 8 8 C 1.46504 * 125.86748 * 179.97438 * 7 6 5 9 9 C 1.53495 * 114.20892 * 275.00651 * 8 7 6 10 10 N 1.47065 * 87.98578 * 87.51572 * 9 8 7 11 11 C 1.34779 * 136.05802 * 207.08028 * 10 9 8 12 12 O 1.21282 * 119.99927 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00033 * 180.02562 * 11 10 9 14 14 C 1.53006 * 109.46866 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46623 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.46997 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47240 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99962 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31522 * 120.00243 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99980 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46755 * 90.00221 * 21 19 17 23 23 H 1.48494 * 109.47308 * 209.99919 * 21 19 17 24 24 H 1.48496 * 109.47178 * 330.00271 * 21 19 17 25 25 C 1.47059 * 87.88483 * 27.34370 * 10 9 8 26 26 N 1.28713 * 108.26457 * 0.26709 * 7 6 5 27 27 N 1.28638 * 110.17666 * 359.55596 * 26 7 6 28 28 H 1.09006 * 109.47357 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47537 * 299.99992 * 1 2 3 30 30 H 1.09001 * 109.47335 * 59.99959 * 1 2 3 31 31 H 0.96696 * 113.99755 * 59.99737 * 4 2 1 32 32 H 1.08000 * 126.91653 * 0.02562 * 6 5 2 33 33 H 1.09000 * 113.28221 * 141.93576 * 8 7 6 34 34 H 1.09000 * 113.46435 * 332.73681 * 9 8 7 35 35 H 1.08995 * 113.52002 * 202.31220 * 9 8 7 36 36 H 1.08993 * 109.47512 * 60.00410 * 13 11 10 37 37 H 1.09000 * 109.47247 * 300.00119 * 13 11 10 38 38 H 1.09000 * 109.47050 * 299.99952 * 14 13 11 39 39 H 1.09001 * 109.46801 * 60.00064 * 14 13 11 40 40 H 1.09000 * 109.47486 * 299.99829 * 15 14 13 41 41 H 1.09001 * 109.47362 * 60.00551 * 15 14 13 42 42 H 1.09000 * 109.46866 * 300.00212 * 16 15 14 43 43 H 1.08996 * 109.47261 * 59.99820 * 16 15 14 44 44 H 0.96992 * 120.00032 * 179.97438 * 20 19 17 45 45 H 1.08999 * 113.47019 * 87.43871 * 25 10 9 46 46 H 1.09002 * 113.46932 * 217.87603 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0323 -0.7105 -1.2305 6 6 2.8887 -0.2192 -2.1563 7 7 3.0542 -1.1995 -3.0743 8 6 3.8989 -1.1231 -4.2689 9 6 3.2167 -0.4750 -5.4817 10 7 3.6746 0.8283 -4.9773 11 6 3.2555 2.1060 -5.0690 12 8 2.2566 2.3726 -5.7031 13 6 4.0281 3.2035 -4.3836 14 6 3.3443 4.5474 -4.6433 15 6 4.1284 5.6614 -3.9469 16 6 3.4450 7.0054 -4.2071 17 6 4.2176 8.1028 -3.5217 18 1 5.1073 7.8655 -2.9574 19 6 3.7892 9.4099 -3.6159 20 7 2.7059 9.6990 -4.3036 21 14 4.7465 10.7702 -2.7658 22 1 5.7781 11.3026 -3.6918 23 1 3.8174 11.8622 -2.3792 24 1 5.4050 10.2271 -1.5507 25 6 4.7946 0.1249 -4.3345 26 7 2.3373 -2.2084 -2.7208 27 7 1.7199 -1.9508 -1.6221 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.7209 -1.5952 1.2329 32 1 3.3482 0.7582 -2.1611 33 1 4.4146 -2.0570 -4.4923 34 1 2.1322 -0.5847 -5.4796 35 1 3.6665 -0.7543 -6.4344 36 1 5.0449 3.2312 -4.7753 37 1 4.0570 3.0122 -3.3109 38 1 3.3150 4.7389 -5.7159 39 1 2.3276 4.5193 -4.2513 40 1 4.1572 5.4697 -2.8743 41 1 5.1452 5.6896 -4.3385 42 1 3.4165 7.1969 -5.2797 43 1 2.4280 6.9777 -3.8159 44 1 2.4044 10.6185 -4.3696 45 1 5.6613 0.0034 -4.9843 46 1 5.0546 0.5264 -3.3550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324931663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:18 Heat of formation + Delta-G solvation = 36.895871 kcal Electronic energy + Delta-G solvation = -26812.878024 eV Core-core repulsion = 22933.969017 eV Total energy + Delta-G solvation = -3878.909007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.79033 -40.89214 -38.52065 -37.67810 -35.00183 -33.89372 -32.69811 -32.25991 -30.66941 -29.92742 -29.12274 -26.96045 -25.70254 -24.40645 -24.34178 -22.40907 -21.78650 -20.92354 -20.08976 -19.43176 -18.11616 -17.43408 -16.94292 -16.62974 -16.22805 -16.19713 -15.88415 -15.60155 -15.26856 -14.94026 -14.46620 -14.45136 -13.75125 -13.66699 -13.47721 -13.14776 -12.95507 -12.65969 -12.37856 -12.30102 -12.25798 -11.86909 -11.75445 -11.65645 -11.47455 -11.28065 -11.04052 -10.63964 -10.61914 -10.55648 -10.49744 -10.46537 -10.04592 -9.69486 -9.63681 -9.32750 -9.27492 -9.03834 -8.34189 -5.98829 -4.01740 1.14036 1.70483 2.09069 2.20982 2.45572 3.12779 3.31526 3.37920 3.40776 3.65600 3.94184 4.16600 4.19147 4.27744 4.33682 4.46091 4.53827 4.63142 4.66320 4.88810 4.90721 4.97297 5.00333 5.07137 5.19360 5.24162 5.29276 5.36647 5.39925 5.65577 5.67490 5.73438 5.94162 6.01116 6.14405 6.17856 6.43068 6.73202 6.90560 7.11846 7.19953 7.28717 7.69259 7.84052 7.90172 8.01790 8.09615 8.43195 9.05878 9.62287 11.12472 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012480 B = 0.002559 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.112108 B =10937.926353 C =12421.771516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.193 3.807 3 H 0.117 0.883 4 O -0.554 6.554 5 C -0.058 4.058 6 C -0.019 4.019 7 N -0.273 5.273 8 C 0.097 3.903 9 C 0.099 3.901 10 N -0.659 5.659 11 C 0.544 3.456 12 O -0.521 6.521 13 C -0.131 4.131 14 C -0.105 4.105 15 C -0.109 4.109 16 C 0.020 3.980 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.101 3.899 26 N -0.079 5.079 27 N -0.257 5.257 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.380 0.620 32 H 0.187 0.813 33 H 0.147 0.853 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.119 0.881 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.061 -26.816 2.701 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.132 3.868 3 H 0.134 0.866 4 O -0.359 6.359 5 C -0.195 4.195 6 C -0.170 4.170 7 N -0.065 5.065 8 C -0.007 4.007 9 C -0.025 4.025 10 N -0.399 5.399 11 C 0.335 3.665 12 O -0.394 6.394 13 C -0.171 4.171 14 C -0.143 4.143 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.023 4.023 26 N -0.058 5.058 27 N -0.125 5.125 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.228 0.772 32 H 0.204 0.796 33 H 0.165 0.835 34 H 0.106 0.894 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.137 0.863 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.146 -27.110 2.040 27.368 hybrid contribution 0.717 1.371 0.185 1.558 sum 3.863 -25.739 2.225 26.122 Atomic orbital electron populations 1.22434 0.94804 1.03384 1.03133 1.20104 0.93415 0.94741 0.78550 0.86572 1.86587 1.77290 1.29708 1.42347 1.22834 1.01579 0.93930 1.01205 1.23338 1.04108 0.97474 0.92095 1.46828 1.31167 1.10516 1.18037 1.22961 0.92483 1.01922 0.83318 1.23313 1.02492 0.80561 0.96112 1.49938 1.28888 1.05863 1.55165 1.20871 0.85026 0.80485 0.80110 1.90758 1.26120 1.81028 1.41517 1.21788 1.00326 0.93928 1.01016 1.21499 0.99672 0.91132 1.01971 1.21648 0.98531 0.95965 0.98555 1.19091 0.95803 0.89734 0.97064 1.21264 1.10744 0.91984 1.31981 0.92743 1.25042 0.95111 0.98875 0.95506 1.69971 1.23177 1.19096 1.41183 0.86609 0.79772 0.81810 0.79894 1.20708 1.21222 1.19878 1.23421 0.91556 0.86894 1.00470 1.78308 1.06180 1.11323 1.09952 1.74983 1.18541 1.14093 1.04842 0.91520 0.90977 0.91401 0.77180 0.79564 0.83546 0.89365 0.86979 0.88886 0.89231 0.91682 0.91674 0.93380 0.93429 0.96617 0.96564 0.92997 0.86311 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.51 37.15 0.35 -1.16 16 2 C 0.19 1.73 4.09 -27.89 -0.11 1.62 16 3 H 0.12 0.94 8.12 -51.93 -0.42 0.51 16 4 O -0.55 -5.27 13.33 -35.23 -0.47 -5.74 16 5 C -0.06 -0.59 6.10 -82.78 -0.50 -1.09 16 6 C -0.02 -0.17 10.37 -17.04 -0.18 -0.35 16 7 N -0.27 -2.32 3.56 -54.44 -0.19 -2.51 16 8 C 0.10 0.45 5.37 -67.68 -0.36 0.09 16 9 C 0.10 0.62 8.42 -8.52 -0.07 0.55 16 10 N -0.66 -5.43 3.42 -185.11 -0.63 -6.06 16 11 C 0.54 6.86 8.08 -10.99 -0.09 6.77 16 12 O -0.52 -9.13 16.76 5.56 0.09 -9.04 16 13 C -0.13 -1.54 5.53 -27.88 -0.15 -1.69 16 14 C -0.10 -1.76 4.50 -26.73 -0.12 -1.88 16 15 C -0.11 -2.14 5.15 -26.73 -0.14 -2.28 16 16 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 18 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 21 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.10 0.38 7.60 -8.39 -0.06 0.31 16 26 N -0.08 -0.88 13.17 60.35 0.79 -0.09 16 27 N -0.26 -3.03 12.40 33.29 0.41 -2.62 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.38 2.71 9.04 45.56 0.41 3.12 16 32 H 0.19 1.30 7.22 -52.49 -0.38 0.92 16 33 H 0.15 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 45 H 0.12 0.11 8.14 -51.93 -0.42 -0.31 16 46 H 0.09 0.30 6.99 -51.93 -0.36 -0.07 16 LS Contribution 390.49 15.07 5.88 5.88 Total: -1.00 -37.78 390.49 -7.02 -44.80 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.63 Total: -2.46 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -1.99 Total: -12.28 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 1.12 Total: -37.76 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.38 Total: -14.77 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.78 -7.02 -44.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324931663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.695 kcal (2) G-P(sol) polarization free energy of solvation -37.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds