Wall clock time and date at job start Tue Mar 31 2020 13:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47386 * 2 1 4 4 C 1.52995 * 109.46940 * 240.00039 * 2 1 3 5 5 C 1.50704 * 109.47213 * 65.00170 * 4 2 1 6 6 O 1.21281 * 119.99760 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99858 * 179.97438 * 5 4 2 8 8 C 1.46505 * 119.99409 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46731 * 180.02562 * 8 7 5 10 10 H 1.09008 * 109.50832 * 304.89779 * 9 8 7 11 11 C 1.52875 * 109.58203 * 184.88574 * 9 8 7 12 12 N 1.47151 * 108.60696 * 187.92468 * 11 9 8 13 13 C 1.36943 * 120.97773 * 230.49979 * 12 11 9 14 14 H 1.08003 * 119.99858 * 153.47834 * 13 12 11 15 15 C 1.38807 * 119.99844 * 333.74609 * 13 12 11 16 16 N 1.31621 * 120.00233 * 342.94715 * 15 13 12 17 17 Si 1.86803 * 119.99741 * 162.94240 * 15 13 12 18 18 H 1.48506 * 109.47318 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47150 * 120.00115 * 17 15 13 20 20 H 1.48496 * 109.47445 * 240.00301 * 17 15 13 21 21 C 1.47150 * 118.03722 * 50.22401 * 12 11 9 22 22 C 1.53296 * 108.38369 * 309.71328 * 21 12 11 23 23 O 1.42957 * 109.51526 * 65.00007 * 9 8 7 24 24 N 1.46499 * 109.47418 * 120.00206 * 2 1 3 25 25 C 1.34946 * 126.04037 * 34.99708 * 24 2 1 26 26 C 1.35314 * 107.75032 * 179.97438 * 25 24 2 27 27 C 1.39867 * 107.91797 * 359.97438 * 26 25 24 28 28 N 1.30834 * 108.20461 * 359.74334 * 27 26 25 29 29 H 1.09007 * 109.47062 * 299.99701 * 1 2 3 30 30 H 1.08993 * 109.47505 * 59.99923 * 1 2 3 31 31 H 1.09007 * 109.46977 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47228 * 304.99776 * 4 2 1 33 33 H 1.09005 * 109.47079 * 184.99838 * 4 2 1 34 34 H 0.96998 * 120.00004 * 0.02562 * 7 5 4 35 35 H 1.08995 * 109.47009 * 60.00880 * 8 7 5 36 36 H 1.08994 * 109.47189 * 299.99581 * 8 7 5 37 37 H 1.08993 * 109.62441 * 68.09922 * 11 9 8 38 38 H 1.09008 * 109.52236 * 307.68162 * 11 9 8 39 39 H 0.97004 * 119.99999 * 179.97438 * 16 15 13 40 40 H 1.08993 * 109.68539 * 69.44307 * 21 12 11 41 41 H 1.09007 * 109.68045 * 189.95855 * 21 12 11 42 42 H 1.09004 * 109.50856 * 172.22651 * 22 21 12 43 43 H 1.08997 * 109.51493 * 292.38079 * 22 21 12 44 44 H 1.08003 * 126.12300 * 359.95632 * 25 24 2 45 45 H 1.08004 * 126.03826 * 180.02562 * 26 25 24 46 46 H 1.08004 * 125.89398 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6412 0.0571 -2.4766 6 8 1.0109 1.0870 -2.3632 7 7 1.9852 -0.3913 -3.7001 8 6 1.5971 0.3651 -4.8932 9 6 2.1072 -0.3561 -6.1425 10 1 3.1829 -0.5116 -6.0594 11 6 1.8105 0.4908 -7.3801 12 7 2.1333 -0.2997 -8.5785 13 6 2.9269 0.2141 -9.5692 14 1 3.5010 -0.4488 -10.1996 15 6 2.9977 1.5872 -9.7596 16 7 2.0779 2.3721 -9.2397 17 14 4.3987 2.3213 -10.7536 18 1 5.2934 1.2341 -11.2259 19 1 3.8466 3.0506 -11.9234 20 1 5.1697 3.2625 -9.9023 21 6 1.5833 -1.6609 -8.6780 22 6 1.8956 -2.4050 -7.3747 23 8 1.4503 -1.6198 -6.2661 24 7 2.0184 -0.6906 1.1961 25 6 1.4403 -1.7559 1.7895 26 6 2.1969 -2.0930 2.8595 27 6 3.2746 -1.2037 2.9218 28 7 3.1718 -0.3662 1.9219 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -1.7198 -1.2951 33 1 3.1263 -0.7994 -1.2056 34 1 2.4891 -1.2152 -3.7907 35 1 2.0311 1.3638 -4.8473 36 1 0.5108 0.4425 -4.9370 37 1 2.4207 1.3938 -7.3607 38 1 0.7545 0.7610 -7.3921 39 1 2.1276 3.3317 -9.3725 40 1 0.5041 -1.6112 -8.8229 41 1 2.0427 -2.1821 -9.5180 42 1 1.3798 -3.3653 -7.3712 43 1 2.9705 -2.5679 -7.2970 44 1 0.5356 -2.2506 1.4681 45 1 2.0033 -2.9058 3.5439 46 1 4.0589 -1.2102 3.6644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753655346.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:37 Heat of formation + Delta-G solvation = 21.616577 kcal Electronic energy + Delta-G solvation = -27050.146383 eV Core-core repulsion = 23170.574816 eV Total energy + Delta-G solvation = -3879.571566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.44814 -39.88254 -38.55702 -35.75677 -34.79971 -34.37471 -31.53129 -31.17691 -30.47673 -29.98070 -28.43001 -27.25325 -25.41830 -23.60943 -23.31390 -21.77552 -21.27105 -20.75641 -20.04284 -19.56298 -17.77509 -17.15503 -16.64283 -16.21770 -15.93085 -15.62334 -15.18423 -14.95531 -14.77471 -14.37261 -14.15754 -13.96566 -13.85647 -13.45880 -13.30550 -13.14542 -12.98281 -12.94299 -12.78487 -12.50837 -11.93012 -11.76504 -11.56694 -11.48218 -11.16265 -10.91097 -10.87319 -10.77994 -10.48341 -10.29803 -10.11192 -9.93135 -9.72087 -9.63468 -9.15666 -8.98068 -8.83023 -8.60962 -6.82185 -5.90440 -3.34243 1.68002 2.18816 2.56752 2.64512 3.24879 3.30933 3.38480 3.40213 4.16935 4.19661 4.37303 4.38753 4.58165 4.68528 4.76350 4.92956 5.10348 5.11976 5.16616 5.30233 5.39586 5.46279 5.47909 5.50905 5.55276 5.67472 5.78854 5.79063 5.86222 5.92576 5.94433 6.04723 6.16741 6.28244 6.43052 6.43561 6.55783 6.71687 6.81034 6.99509 7.40279 7.49511 7.51550 7.65663 7.76322 8.17782 8.26952 9.04734 9.67769 10.24336 11.17803 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.002292 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.560816 B =12211.753454 C =12630.704423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.176 3.824 3 H 0.112 0.888 4 C -0.154 4.154 5 C 0.517 3.483 6 O -0.541 6.541 7 N -0.717 5.717 8 C 0.132 3.868 9 C 0.055 3.945 10 H 0.056 0.944 11 C 0.152 3.848 12 N -0.594 5.594 13 C -0.257 4.257 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.901 5.901 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.287 1.287 21 C 0.109 3.891 22 C 0.050 3.950 23 O -0.391 6.391 24 N -0.365 5.365 25 C 0.056 3.944 26 C -0.279 4.279 27 C 0.041 3.959 28 N -0.297 5.297 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.403 0.597 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.031 0.969 39 H 0.256 0.744 40 H 0.027 0.973 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.171 0.829 45 H 0.145 0.855 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.025 -10.526 19.904 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.074 3.926 3 H 0.130 0.870 4 C -0.195 4.195 5 C 0.302 3.698 6 O -0.420 6.420 7 N -0.367 5.367 8 C 0.008 3.992 9 C -0.004 4.004 10 H 0.073 0.927 11 C 0.025 3.975 12 N -0.318 5.318 13 C -0.386 4.386 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.545 5.545 17 Si 0.734 3.266 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.214 1.214 21 C -0.018 4.018 22 C -0.028 4.028 23 O -0.310 6.310 24 N -0.148 5.148 25 C -0.091 4.091 26 C -0.308 4.308 27 C -0.145 4.145 28 N -0.118 5.118 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.237 0.763 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.061 0.939 44 H 0.189 0.811 45 H 0.163 0.837 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.160 -8.572 19.321 21.169 hybrid contribution 0.782 -0.752 -0.400 1.156 sum -0.377 -9.323 18.920 21.096 Atomic orbital electron populations 1.22330 0.92045 1.03015 1.05207 1.20957 0.95356 0.96987 0.79335 0.86993 1.22071 1.04095 1.00787 0.92596 1.20159 0.79581 0.85640 0.84409 1.90700 1.40160 1.24497 1.86596 1.45992 1.57146 1.27815 1.05742 1.21445 1.01293 0.94811 0.81616 1.23065 0.95566 0.85720 0.96096 0.92652 1.21219 0.99840 0.94069 0.82352 1.44038 1.57752 1.11461 1.18566 1.19221 1.18047 0.90446 1.10885 0.91292 1.25062 0.98061 0.97077 0.99408 1.70028 1.32285 1.03872 1.48330 0.86197 0.81888 0.79068 0.79458 1.20219 1.21562 1.21398 1.21602 0.97025 0.87856 0.95268 1.23010 0.98320 0.93537 0.87932 1.87775 1.64689 1.29925 1.48623 1.48999 1.19091 1.24099 1.22592 1.22528 0.99915 0.91184 0.95448 1.21510 0.99484 1.06555 1.03299 1.23894 0.99345 0.94050 0.97234 1.77405 1.02731 1.23962 1.07692 0.91653 0.87713 0.92116 0.88264 0.88063 0.76330 0.89763 0.90549 0.88581 0.95067 0.93411 0.95516 0.91938 0.89986 0.93861 0.81147 0.83692 0.80191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 8.58 37.16 0.32 -1.18 16 2 C 0.18 1.78 3.05 -67.94 -0.21 1.57 16 3 H 0.11 1.32 7.96 -51.93 -0.41 0.91 16 4 C -0.15 -1.46 5.50 -27.88 -0.15 -1.61 16 5 C 0.52 6.53 7.55 -10.98 -0.08 6.45 16 6 O -0.54 -8.54 13.96 5.56 0.08 -8.46 16 7 N -0.72 -9.22 5.50 -60.29 -0.33 -9.55 16 8 C 0.13 2.10 5.34 -4.04 -0.02 2.08 16 9 C 0.06 0.99 2.80 -26.79 -0.07 0.92 16 10 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 11 C 0.15 3.48 4.71 -3.75 -0.02 3.46 16 12 N -0.59 -14.49 3.05 -172.08 -0.53 -15.02 16 13 C -0.26 -6.84 9.65 -15.06 -0.15 -6.99 16 14 H 0.07 1.80 7.88 -52.48 -0.41 1.38 16 15 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 16 N -0.90 -25.52 11.15 55.49 0.62 -24.90 16 17 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.11 2.20 6.74 -3.53 -0.02 2.17 16 22 C 0.05 0.84 6.99 37.31 0.26 1.10 16 23 O -0.39 -6.92 10.33 -35.23 -0.36 -7.28 16 24 N -0.37 -3.82 3.53 -54.87 -0.19 -4.02 16 25 C 0.06 0.47 10.59 -17.22 -0.18 0.29 16 26 C -0.28 -2.33 10.80 -40.01 -0.43 -2.76 16 27 C 0.04 0.39 12.02 -17.37 -0.21 0.18 16 28 N -0.30 -3.58 12.58 30.62 0.39 -3.20 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 1.14 5.95 -51.93 -0.31 0.83 16 31 H 0.06 0.43 7.16 -51.93 -0.37 0.06 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.40 4.43 8.47 -40.82 -0.35 4.08 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.10 2.44 6.15 -51.93 -0.32 2.12 16 38 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 1.20 7.96 -51.92 -0.41 0.78 16 42 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.17 0.95 7.26 -52.48 -0.38 0.57 16 45 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 46 H 0.18 1.15 8.06 -52.48 -0.42 0.72 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -32.29 374.89 -7.94 -40.23 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -7.17 Total: 4.76 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.06 Total: 5.67 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.05 Total: -56.69 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.29 Total: -15.74 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.29 -7.94 -40.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753655346.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.849 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds