Wall clock time and date at job start Tue Mar 31 2020 13:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47150 * 2 1 4 4 C 1.52999 * 109.46757 * 240.00080 * 2 1 3 5 5 C 1.50707 * 109.47249 * 65.00127 * 4 2 1 6 6 O 1.21281 * 119.99719 * 359.97438 * 5 4 2 7 7 N 1.34770 * 120.00023 * 179.97438 * 5 4 2 8 8 C 1.46503 * 120.00172 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47397 * 180.02562 * 8 7 5 10 10 H 1.08998 * 109.51150 * 60.10470 * 9 8 7 11 11 C 1.53297 * 109.50989 * 180.25420 * 9 8 7 12 12 N 1.47152 * 108.37915 * 172.22385 * 11 9 8 13 13 C 1.36946 * 120.97893 * 129.44432 * 12 11 9 14 14 H 1.07995 * 119.99645 * 333.61601 * 13 12 11 15 15 C 1.38808 * 119.99804 * 153.61827 * 13 12 11 16 16 N 1.31621 * 120.00003 * 343.18003 * 15 13 12 17 17 Si 1.86803 * 120.00108 * 163.18400 * 15 13 12 18 18 H 1.48500 * 109.46924 * 94.42771 * 17 15 13 19 19 H 1.48498 * 109.47254 * 214.42880 * 17 15 13 20 20 H 1.48499 * 109.46831 * 334.42994 * 17 15 13 21 21 C 1.47152 * 118.04080 * 309.46304 * 12 11 9 22 22 C 1.53298 * 108.38100 * 50.53640 * 21 12 11 23 23 O 1.42958 * 109.50984 * 299.99901 * 9 8 7 24 24 N 1.46495 * 109.47251 * 120.00529 * 2 1 3 25 25 C 1.34949 * 126.04035 * 34.70706 * 24 2 1 26 26 C 1.35314 * 107.74634 * 179.84196 * 25 24 2 27 27 C 1.39867 * 107.92195 * 0.42698 * 26 25 24 28 28 N 1.30842 * 108.20255 * 359.73442 * 27 26 25 29 29 H 1.08998 * 109.47469 * 59.99723 * 1 2 3 30 30 H 1.08998 * 109.47150 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47031 * 299.99903 * 1 2 3 32 32 H 1.08996 * 109.47396 * 304.99720 * 4 2 1 33 33 H 1.08999 * 109.47117 * 185.00015 * 4 2 1 34 34 H 0.97007 * 120.00263 * 0.02562 * 7 5 4 35 35 H 1.08996 * 109.47009 * 60.00015 * 8 7 5 36 36 H 1.09009 * 109.46980 * 300.00512 * 8 7 5 37 37 H 1.08994 * 109.68212 * 291.94899 * 11 9 8 38 38 H 1.09001 * 109.68076 * 52.50440 * 11 9 8 39 39 H 0.97010 * 120.00023 * 179.97438 * 16 15 13 40 40 H 1.08991 * 109.68331 * 170.25989 * 21 12 11 41 41 H 1.08994 * 109.68077 * 290.78338 * 21 12 11 42 42 H 1.09005 * 109.51347 * 187.77295 * 22 21 12 43 43 H 1.09006 * 109.51340 * 67.62223 * 22 21 12 44 44 H 1.07995 * 126.12677 * 0.02562 * 25 24 2 45 45 H 1.08003 * 126.04040 * 180.16688 * 26 25 24 46 46 H 1.07996 * 125.90137 * 179.75924 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4767 6 8 1.0108 1.0870 -2.3633 7 7 1.9851 -0.3913 -3.7002 8 6 1.5971 0.3650 -4.8933 9 6 2.1071 -0.3562 -6.1426 10 1 1.6718 -1.3543 -6.1900 11 6 1.7070 0.4379 -7.3914 12 7 2.3649 -0.1705 -8.5586 13 6 1.6497 -0.4980 -9.6796 14 1 0.5961 -0.7217 -9.6017 15 6 2.2792 -0.5426 -10.9160 16 7 3.4501 0.0360 -11.0796 17 14 1.4645 -1.4236 -12.3477 18 1 0.6951 -0.4452 -13.1576 19 1 2.5056 -2.0581 -13.1955 20 1 0.5453 -2.4676 -11.8279 21 6 3.8138 -0.4168 -8.4856 22 6 4.1112 -1.1692 -7.1835 23 8 3.5319 -0.4587 -6.0865 24 7 2.0183 -0.6907 1.1961 25 6 1.4373 -1.7526 1.7925 26 6 2.1967 -2.0929 2.8596 27 6 3.2735 -1.2026 2.9229 28 7 3.1677 -0.3616 1.9262 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6053 -1.7198 -1.2952 33 1 3.1262 -0.7995 -1.2057 34 1 2.4890 -1.2153 -3.7908 35 1 2.0310 1.3638 -4.8474 36 1 0.5106 0.4425 -4.9370 37 1 0.6252 0.4008 -7.5189 38 1 2.0295 1.4738 -7.2867 39 1 3.8901 0.0045 -11.9435 40 1 4.1270 -1.0199 -9.3377 41 1 4.3484 0.5330 -8.4917 42 1 5.1897 -1.2404 -7.0423 43 1 3.6832 -2.1703 -7.2355 44 1 0.5304 -2.2447 1.4736 45 1 2.0030 -2.9055 3.5441 46 1 4.0573 -1.2086 3.6659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753655347.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:40 Heat of formation + Delta-G solvation = 21.741193 kcal Electronic energy + Delta-G solvation = -26869.477468 eV Core-core repulsion = 22989.911305 eV Total energy + Delta-G solvation = -3879.566163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48260 -39.96919 -38.56660 -35.81472 -34.88994 -34.33900 -31.74495 -30.97166 -30.47486 -30.01221 -28.52021 -27.34645 -25.41553 -23.65676 -23.20845 -21.88314 -21.30361 -20.81482 -20.08469 -19.60248 -17.83373 -17.12729 -16.68346 -16.23509 -16.18727 -15.49105 -15.18766 -15.00165 -14.87154 -14.49956 -14.06986 -14.03943 -13.84537 -13.52762 -13.27179 -13.18604 -13.09382 -12.98633 -12.76595 -12.59569 -12.00773 -11.79979 -11.61318 -11.53397 -11.18087 -10.91055 -10.90274 -10.76850 -10.47551 -10.34065 -10.07854 -10.01814 -9.74179 -9.65356 -9.15030 -9.08333 -8.86392 -8.60162 -6.81695 -5.90165 -3.34125 1.64649 2.14789 2.47657 2.61718 3.16549 3.29884 3.37345 3.39108 4.13769 4.15115 4.32359 4.37692 4.54067 4.63264 4.72264 4.86017 5.05862 5.06589 5.11714 5.27417 5.36233 5.39246 5.42960 5.44479 5.46143 5.62696 5.72866 5.75669 5.76228 5.86496 5.96003 6.07987 6.21687 6.29856 6.40564 6.40869 6.42150 6.68308 6.77487 7.03562 7.40314 7.45702 7.48399 7.64813 7.77558 8.08563 8.27329 9.05236 9.67984 10.24586 11.17995 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031727 B = 0.002054 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.319031 B =13631.665010 C =13908.960419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.176 3.824 3 H 0.112 0.888 4 C -0.154 4.154 5 C 0.518 3.482 6 O -0.543 6.543 7 N -0.715 5.715 8 C 0.130 3.870 9 C 0.064 3.936 10 H 0.059 0.941 11 C 0.122 3.878 12 N -0.594 5.594 13 C -0.257 4.257 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.902 5.902 17 Si 0.905 3.095 18 H -0.286 1.286 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.139 3.861 22 C 0.040 3.960 23 O -0.390 6.390 24 N -0.366 5.366 25 C 0.055 3.945 26 C -0.278 4.278 27 C 0.041 3.959 28 N -0.296 5.296 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.405 0.595 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.030 0.970 39 H 0.255 0.745 40 H 0.094 0.906 41 H 0.029 0.971 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.171 0.829 45 H 0.145 0.855 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.087 -5.918 23.475 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.074 3.926 3 H 0.130 0.870 4 C -0.196 4.196 5 C 0.304 3.696 6 O -0.421 6.421 7 N -0.366 5.366 8 C 0.006 3.994 9 C 0.004 3.996 10 H 0.076 0.924 11 C -0.006 4.006 12 N -0.318 5.318 13 C -0.386 4.386 14 H 0.087 0.913 15 C -0.197 4.197 16 N -0.546 5.546 17 Si 0.735 3.265 18 H -0.213 1.213 19 H -0.215 1.215 20 H -0.204 1.204 21 C 0.013 3.987 22 C -0.038 4.038 23 O -0.310 6.310 24 N -0.148 5.148 25 C -0.091 4.091 26 C -0.308 4.308 27 C -0.145 4.145 28 N -0.117 5.117 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.239 0.761 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.047 0.953 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.188 0.812 45 H 0.163 0.837 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.870 -4.002 22.783 23.309 hybrid contribution -0.469 -1.761 -0.729 1.963 sum -3.338 -5.763 22.054 23.038 Atomic orbital electron populations 1.22331 0.92098 1.02990 1.05181 1.20945 0.95294 0.97006 0.79377 0.87009 1.22068 1.04282 1.00698 0.92510 1.20168 0.79471 0.85594 0.84410 1.90693 1.40377 1.24450 1.86606 1.45921 1.57050 1.28008 1.05616 1.21468 0.99819 0.95985 0.82107 1.22816 0.82810 0.99108 0.94827 0.92351 1.21443 0.97356 0.94785 0.86996 1.44068 1.04360 1.70595 1.12737 1.19185 0.94049 1.40695 0.84651 0.91342 1.25063 0.97668 0.99616 0.97312 1.70037 1.16839 1.44148 1.23587 0.86239 0.78489 0.79556 0.82236 1.21314 1.21450 1.20380 1.21443 0.84610 0.98119 0.94486 1.23332 0.96872 0.94794 0.88790 1.87777 1.19286 1.77546 1.46355 1.48983 1.19263 1.24208 1.22389 1.22520 0.99828 0.91340 0.95437 1.21515 0.99307 1.06554 1.03407 1.23902 0.99351 0.93916 0.97308 1.77415 1.02971 1.23744 1.07593 0.87784 0.92120 0.91632 0.88285 0.87904 0.76060 0.90570 0.90044 0.91757 0.95215 0.93458 0.88760 0.95330 0.90001 0.94081 0.81160 0.83676 0.80165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 8.57 37.16 0.32 -1.03 16 2 C 0.18 1.66 3.05 -67.93 -0.21 1.45 16 3 H 0.11 1.25 7.96 -51.93 -0.41 0.84 16 4 C -0.15 -1.35 5.50 -27.88 -0.15 -1.50 16 5 C 0.52 6.00 7.55 -10.98 -0.08 5.91 16 6 O -0.54 -7.86 13.97 5.56 0.08 -7.78 16 7 N -0.72 -8.39 5.45 -60.29 -0.33 -8.72 16 8 C 0.13 1.81 5.37 -4.04 -0.02 1.79 16 9 C 0.06 1.06 2.87 -26.58 -0.08 0.98 16 10 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 11 C 0.12 2.44 6.02 -3.53 -0.02 2.42 16 12 N -0.59 -14.49 3.05 -171.83 -0.52 -15.01 16 13 C -0.26 -6.83 9.65 -15.06 -0.15 -6.98 16 14 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 15 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 16 N -0.90 -25.59 11.15 55.49 0.62 -24.97 16 17 Si 0.91 21.06 29.59 -169.99 -5.03 16.03 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 21 C 0.14 3.23 5.44 -3.53 -0.02 3.21 16 22 C 0.04 0.74 6.98 37.31 0.26 1.00 16 23 O -0.39 -6.97 10.13 -35.23 -0.36 -7.33 16 24 N -0.37 -3.65 3.53 -54.87 -0.19 -3.84 16 25 C 0.06 0.44 10.59 -17.22 -0.18 0.26 16 26 C -0.28 -2.23 10.80 -40.01 -0.43 -2.66 16 27 C 0.04 0.38 12.03 -17.36 -0.21 0.17 16 28 N -0.30 -3.47 12.58 30.62 0.39 -3.08 16 29 H 0.10 1.01 5.95 -51.93 -0.31 0.70 16 30 H 0.06 0.37 7.15 -51.93 -0.37 0.00 16 31 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.40 4.16 8.35 -40.82 -0.34 3.82 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 37 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.17 0.86 7.25 -52.49 -0.38 0.48 16 45 H 0.15 0.83 8.06 -52.48 -0.42 0.40 16 46 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -32.38 374.61 -7.93 -40.32 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.17 Total: 3.74 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -1.06 Total: 5.00 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.04 Total: -55.62 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.28 Total: -15.11 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.38 -7.93 -40.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753655347.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.057 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds