Wall clock time and date at job start Tue Mar 31 2020 13:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47175 * 2 1 4 4 C 1.52995 * 109.47415 * 120.00456 * 2 1 3 5 5 C 1.50703 * 109.47005 * 295.00216 * 4 2 1 6 6 O 1.21286 * 119.99877 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99993 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99546 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46525 * 180.02562 * 8 7 5 10 10 H 1.09001 * 109.51084 * 304.89412 * 9 8 7 11 11 C 1.52884 * 109.57998 * 184.88342 * 9 8 7 12 12 N 1.47146 * 108.60654 * 187.92051 * 11 9 8 13 13 C 1.36937 * 120.98240 * 230.50187 * 12 11 9 14 14 H 1.07997 * 120.00103 * 153.48011 * 13 12 11 15 15 C 1.38803 * 119.99778 * 333.74611 * 13 12 11 16 16 N 1.31618 * 120.00481 * 342.95186 * 15 13 12 17 17 Si 1.86802 * 119.99929 * 162.95490 * 15 13 12 18 18 H 1.48496 * 109.47440 * 60.00068 * 17 15 13 19 19 H 1.48504 * 109.47243 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46890 * 300.00125 * 17 15 13 21 21 C 1.47154 * 118.03522 * 50.22608 * 12 11 9 22 22 C 1.53292 * 108.38799 * 309.71522 * 21 12 11 23 23 O 1.42955 * 109.51353 * 65.00183 * 9 8 7 24 24 N 1.46498 * 109.47075 * 240.00294 * 2 1 3 25 25 C 1.34948 * 126.04233 * 324.71694 * 24 2 1 26 26 C 1.35310 * 107.75187 * 179.83770 * 25 24 2 27 27 C 1.39875 * 107.91883 * 0.42501 * 26 25 24 28 28 N 1.30831 * 108.20129 * 359.73346 * 27 26 25 29 29 H 1.08998 * 109.47258 * 299.99303 * 1 2 3 30 30 H 1.08998 * 109.47175 * 59.99887 * 1 2 3 31 31 H 1.09006 * 109.47026 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47427 * 175.00121 * 4 2 1 33 33 H 1.09005 * 109.47198 * 54.99836 * 4 2 1 34 34 H 0.96995 * 120.00093 * 0.02562 * 7 5 4 35 35 H 1.08994 * 109.47267 * 60.00615 * 8 7 5 36 36 H 1.08995 * 109.47174 * 299.99535 * 8 7 5 37 37 H 1.09002 * 109.61540 * 68.09996 * 11 9 8 38 38 H 1.09004 * 109.51975 * 307.68752 * 11 9 8 39 39 H 0.97000 * 120.00485 * 179.97438 * 16 15 13 40 40 H 1.09006 * 109.67819 * 69.43902 * 21 12 11 41 41 H 1.09000 * 109.68216 * 189.95488 * 21 12 11 42 42 H 1.08998 * 109.51709 * 172.22141 * 22 21 12 43 43 H 1.08997 * 109.51134 * 292.37811 * 22 21 12 44 44 H 1.08000 * 126.12139 * 359.97438 * 25 24 2 45 45 H 1.07997 * 126.04509 * 180.15838 * 26 25 24 46 46 H 1.08000 * 125.89704 * 179.71886 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6413 0.0569 2.4765 6 8 1.0116 1.0873 2.3633 7 7 1.9845 -0.3922 3.7001 8 6 1.5973 0.3647 4.8932 9 6 2.1073 -0.3567 6.1425 10 1 1.7424 -1.3838 6.1441 11 6 1.6019 0.3639 7.3925 12 7 2.2549 -0.2269 8.5713 13 6 1.5209 -0.6376 9.6520 14 1 1.8966 -1.4206 10.2939 15 6 0.2914 -0.0514 9.9191 16 7 -0.0235 1.0996 9.3637 17 14 -0.9164 -0.8959 11.0669 18 1 -0.2967 -1.0560 12.4068 19 1 -2.1461 -0.0717 11.1850 20 1 -1.2668 -2.2317 10.5208 21 6 3.7194 -0.3692 8.5522 22 6 4.1212 -1.0590 7.2435 23 8 3.5369 -0.3577 6.1431 24 7 2.0183 -0.6905 -1.1962 25 6 1.4432 -1.7591 -1.7865 26 6 2.1962 -2.0923 -2.8602 27 6 3.2738 -1.2026 -2.9228 28 7 3.1681 -0.3620 -1.9259 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1263 -0.7995 1.2055 33 1 1.6054 -1.7199 1.2950 34 1 2.4884 -1.2160 3.7907 35 1 0.5111 0.4436 4.9369 36 1 2.0327 1.3629 4.8474 37 1 0.5215 0.2438 7.4725 38 1 1.8503 1.4233 7.3276 39 1 -0.8828 1.5091 9.5500 40 1 4.1846 0.6152 8.6061 41 1 4.0407 -0.9739 9.4002 42 1 5.2067 -1.0503 7.1456 43 1 3.7637 -2.0887 7.2501 44 1 0.5419 -2.2576 -1.4616 45 1 2.0022 -2.9044 -3.5451 46 1 4.0578 -1.2089 -3.6656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753655348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:43 Heat of formation + Delta-G solvation = 21.747577 kcal Electronic energy + Delta-G solvation = -27048.443224 eV Core-core repulsion = 23168.877338 eV Total energy + Delta-G solvation = -3879.565886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44722 -39.88120 -38.55139 -35.75649 -34.79822 -34.37176 -31.52873 -31.17637 -30.47579 -29.98027 -28.43056 -27.25012 -25.41705 -23.61007 -23.30783 -21.77196 -21.27213 -20.75577 -20.04560 -19.55624 -17.77375 -17.15125 -16.64035 -16.19633 -16.02457 -15.47702 -15.19552 -14.95529 -14.86591 -14.39517 -14.06221 -13.99232 -13.86453 -13.42944 -13.33176 -13.13179 -12.98103 -12.93536 -12.82118 -12.48955 -11.93210 -11.73738 -11.59669 -11.47862 -11.15468 -10.88607 -10.87220 -10.79697 -10.47993 -10.34363 -10.09969 -9.93239 -9.72262 -9.63307 -9.15109 -8.98165 -8.82975 -8.60477 -6.82039 -5.90288 -3.34151 1.68041 2.18950 2.56555 2.64556 3.25126 3.31561 3.37378 3.37872 4.18173 4.18933 4.37556 4.38674 4.58067 4.68659 4.76247 4.92478 5.10822 5.11505 5.16490 5.30115 5.39913 5.46699 5.47910 5.51258 5.55307 5.67428 5.79035 5.79576 5.86362 5.91441 5.95073 6.05368 6.17087 6.28768 6.43581 6.43605 6.55970 6.72461 6.81070 6.99629 7.40347 7.49573 7.51622 7.64888 7.77017 8.17828 8.27092 9.04770 9.67773 10.24629 11.17938 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.002312 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.575438 B =12109.769398 C =12744.520058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.176 3.824 3 H 0.112 0.888 4 C -0.154 4.154 5 C 0.517 3.483 6 O -0.541 6.541 7 N -0.716 5.716 8 C 0.132 3.868 9 C 0.055 3.945 10 H 0.055 0.945 11 C 0.152 3.848 12 N -0.594 5.594 13 C -0.258 4.258 14 H 0.068 0.932 15 C 0.003 3.997 16 N -0.902 5.902 17 Si 0.905 3.095 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.283 1.283 21 C 0.109 3.891 22 C 0.050 3.950 23 O -0.390 6.390 24 N -0.365 5.365 25 C 0.055 3.945 26 C -0.279 4.279 27 C 0.041 3.959 28 N -0.297 5.297 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.403 0.597 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.031 0.969 39 H 0.257 0.743 40 H 0.027 0.973 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.171 0.829 45 H 0.145 0.855 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 -7.707 -20.150 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.074 3.926 3 H 0.130 0.870 4 C -0.195 4.195 5 C 0.302 3.698 6 O -0.420 6.420 7 N -0.367 5.367 8 C 0.008 3.992 9 C -0.005 4.005 10 H 0.073 0.927 11 C 0.025 3.975 12 N -0.318 5.318 13 C -0.387 4.387 14 H 0.086 0.914 15 C -0.196 4.196 16 N -0.545 5.545 17 Si 0.735 3.265 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.210 1.210 21 C -0.018 4.018 22 C -0.028 4.028 23 O -0.310 6.310 24 N -0.148 5.148 25 C -0.091 4.091 26 C -0.308 4.308 27 C -0.145 4.145 28 N -0.118 5.118 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.237 0.763 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.061 0.939 44 H 0.188 0.812 45 H 0.163 0.837 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.511 -5.672 -19.577 20.683 hybrid contribution -0.815 -1.754 0.507 1.999 sum 2.696 -7.426 -19.070 20.642 Atomic orbital electron populations 1.22333 0.92057 1.03002 1.05224 1.20957 0.95336 0.97011 0.79330 0.86982 1.22070 1.04164 1.00713 0.92597 1.20160 0.79577 0.85651 0.84404 1.90701 1.40268 1.24404 1.86579 1.45991 1.57051 1.27869 1.05777 1.21446 1.00175 0.95830 0.81731 1.23066 0.81722 0.99464 0.96201 0.92672 1.21220 0.99486 0.94296 0.82463 1.44019 0.99667 1.73056 1.15045 1.19136 1.00638 1.14026 1.04926 0.91386 1.25057 1.00053 0.95400 0.99047 1.70007 1.22633 1.15125 1.46780 0.86327 0.80664 0.78873 0.80654 1.20767 1.21473 1.20973 1.21605 0.86782 0.98035 0.95336 1.23011 0.96805 0.94854 0.88128 1.87788 1.19676 1.76688 1.46839 1.48999 1.19399 1.23837 1.22548 1.22524 0.99945 0.91203 0.95422 1.21509 0.99518 1.06633 1.03183 1.23895 0.99308 0.94029 0.97295 1.77406 1.02822 1.23850 1.07679 0.87711 0.91643 0.92129 0.87997 0.88332 0.76333 0.89752 0.90559 0.88594 0.95065 0.93304 0.95501 0.91934 0.89975 0.93870 0.81159 0.83696 0.80186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 8.58 37.16 0.32 -1.18 16 2 C 0.18 1.78 3.05 -67.94 -0.21 1.57 16 3 H 0.11 1.33 7.95 -51.93 -0.41 0.91 16 4 C -0.15 -1.45 5.50 -27.88 -0.15 -1.61 16 5 C 0.52 6.53 7.55 -10.98 -0.08 6.45 16 6 O -0.54 -8.54 13.97 5.55 0.08 -8.46 16 7 N -0.72 -9.23 5.50 -60.29 -0.33 -9.56 16 8 C 0.13 2.10 5.34 -4.04 -0.02 2.08 16 9 C 0.06 0.99 2.80 -26.79 -0.07 0.92 16 10 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 11 C 0.15 3.48 4.71 -3.75 -0.02 3.47 16 12 N -0.59 -14.50 3.05 -172.08 -0.53 -15.03 16 13 C -0.26 -6.86 9.65 -15.06 -0.15 -7.01 16 14 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 15 C 0.00 0.09 4.94 -17.43 -0.09 0.01 16 16 N -0.90 -25.44 11.15 55.49 0.62 -24.83 16 17 Si 0.91 21.02 29.59 -169.99 -5.03 15.99 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.11 2.21 6.74 -3.53 -0.02 2.19 16 22 C 0.05 0.85 6.99 37.31 0.26 1.11 16 23 O -0.39 -7.02 10.33 -35.23 -0.36 -7.39 16 24 N -0.37 -3.82 3.52 -54.87 -0.19 -4.02 16 25 C 0.06 0.47 10.59 -17.23 -0.18 0.29 16 26 C -0.28 -2.33 10.80 -40.01 -0.43 -2.76 16 27 C 0.04 0.39 12.03 -17.37 -0.21 0.18 16 28 N -0.30 -3.58 12.58 30.62 0.39 -3.19 16 29 H 0.10 1.13 5.95 -51.93 -0.31 0.83 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.42 7.16 -51.93 -0.37 0.05 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.40 4.43 8.47 -40.82 -0.35 4.08 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.10 2.42 6.15 -51.93 -0.32 2.10 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.17 0.95 7.27 -52.49 -0.38 0.57 16 45 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -32.26 374.90 -7.95 -40.21 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.18 Total: 4.93 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.06 Total: 5.69 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.05 Total: -56.62 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.29 Total: -15.85 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.26 -7.95 -40.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753655348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.956 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds