Wall clock time and date at job start Tue Mar 31 2020 13:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47494 * 2 1 4 4 C 1.53002 * 109.47147 * 119.99971 * 2 1 3 5 5 C 1.50700 * 109.47192 * 295.00328 * 4 2 1 6 6 O 1.21288 * 119.99662 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00279 * 179.97438 * 5 4 2 8 8 C 1.46498 * 119.99821 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46612 * 179.97438 * 8 7 5 10 10 H 1.09006 * 109.50912 * 60.10496 * 9 8 7 11 11 C 1.53295 * 109.51141 * 180.25445 * 9 8 7 12 12 N 1.47150 * 108.38428 * 172.23089 * 11 9 8 13 13 C 1.36942 * 120.98351 * 129.48965 * 12 11 9 14 14 H 1.07998 * 120.00079 * 206.21018 * 13 12 11 15 15 C 1.38812 * 119.99836 * 26.20725 * 13 12 11 16 16 N 1.31617 * 120.00322 * 16.92398 * 15 13 12 17 17 Si 1.86802 * 119.99753 * 196.91760 * 15 13 12 18 18 H 1.48504 * 109.46841 * 90.00525 * 17 15 13 19 19 H 1.48500 * 109.46891 * 210.00026 * 17 15 13 20 20 H 1.48493 * 109.47445 * 330.00574 * 17 15 13 21 21 C 1.47156 * 118.03594 * 309.46138 * 12 11 9 22 22 C 1.53291 * 108.38093 * 50.53779 * 21 12 11 23 23 O 1.42957 * 109.51462 * 300.00240 * 9 8 7 24 24 N 1.46501 * 109.47483 * 239.99966 * 2 1 3 25 25 C 1.34948 * 126.03362 * 325.00202 * 24 2 1 26 26 C 1.35313 * 107.74646 * 179.97438 * 25 24 2 27 27 C 1.39872 * 107.92245 * 0.26482 * 26 25 24 28 28 N 1.30841 * 108.19511 * 359.55454 * 27 26 25 29 29 H 1.09002 * 109.46960 * 60.00084 * 1 2 3 30 30 H 1.08994 * 109.47202 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46990 * 300.00499 * 1 2 3 32 32 H 1.09002 * 109.47135 * 54.99740 * 4 2 1 33 33 H 1.08998 * 109.47319 * 175.00002 * 4 2 1 34 34 H 0.96997 * 119.99308 * 0.02562 * 7 5 4 35 35 H 1.08999 * 109.47141 * 299.99578 * 8 7 5 36 36 H 1.08998 * 109.47159 * 60.00287 * 8 7 5 37 37 H 1.09003 * 109.68037 * 291.95313 * 11 9 8 38 38 H 1.08998 * 109.68499 * 52.50243 * 11 9 8 39 39 H 0.96998 * 120.00704 * 179.97438 * 16 15 13 40 40 H 1.08993 * 109.67888 * 290.81600 * 21 12 11 41 41 H 1.08994 * 109.71326 * 170.28000 * 21 12 11 42 42 H 1.09005 * 109.51365 * 187.77277 * 22 21 12 43 43 H 1.08999 * 109.51650 * 67.62282 * 22 21 12 44 44 H 1.08006 * 126.13053 * 359.96069 * 25 24 2 45 45 H 1.08000 * 126.04219 * 180.02562 * 26 25 24 46 46 H 1.07991 * 125.90233 * 179.73851 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 8 1.0116 1.0874 2.3632 7 7 1.9843 -0.3919 3.7002 8 6 1.5971 0.3650 4.8933 9 6 2.1060 -0.3570 6.1426 10 1 3.1924 -0.4351 6.1008 11 6 1.6959 0.4309 7.3920 12 7 2.0300 -0.3733 8.5782 13 6 2.7440 0.1640 9.6158 14 1 3.3370 -0.4764 10.2520 15 6 2.7057 1.5317 9.8499 16 7 1.7530 2.2647 9.3140 17 14 4.0064 2.3318 10.9258 18 1 5.1516 2.7595 10.0826 19 1 3.4247 3.5157 11.6079 20 1 4.4769 1.3566 11.9419 21 6 1.5735 -1.7717 8.6167 22 6 1.9896 -2.4523 7.3077 23 8 1.5351 -1.6662 6.2033 24 7 2.0184 -0.6906 -1.1961 25 6 1.4402 -1.7559 -1.7894 26 6 2.1962 -2.0923 -2.8601 27 6 3.2766 -1.2059 -2.9198 28 7 3.1676 -0.3615 -1.9263 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 2.4882 -1.2158 3.7908 35 1 2.0325 1.3632 4.8474 36 1 0.5109 0.4439 4.9368 37 1 2.2382 1.3759 7.4245 38 1 0.6233 0.6233 7.3691 39 1 1.7259 3.2204 9.4779 40 1 0.4886 -1.8011 8.7171 41 1 2.0342 -2.2857 9.4603 42 1 1.5433 -3.4454 7.2558 43 1 3.0756 -2.5380 7.2710 44 1 0.5362 -2.2514 -1.4673 45 1 2.0020 -2.9044 -3.5451 46 1 4.0629 -1.2150 -3.6599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753655349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:46 Heat of formation + Delta-G solvation = 21.556747 kcal Electronic energy + Delta-G solvation = -27055.241583 eV Core-core repulsion = 23175.667422 eV Total energy + Delta-G solvation = -3879.574161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.44638 -39.87611 -38.54470 -35.75155 -34.79802 -34.36347 -31.52221 -31.17105 -30.47159 -29.97827 -28.42475 -27.25586 -25.41249 -23.61033 -23.30592 -21.76858 -21.27142 -20.73414 -20.03734 -19.57772 -17.77152 -17.15282 -16.63913 -16.23170 -15.88830 -15.63196 -15.19351 -14.94918 -14.77230 -14.37412 -14.15561 -13.96867 -13.84999 -13.46540 -13.30090 -13.14503 -12.98278 -12.93168 -12.79473 -12.49647 -11.92856 -11.76183 -11.55510 -11.47863 -11.15482 -10.89990 -10.87310 -10.79301 -10.48407 -10.30234 -10.11666 -9.92406 -9.72468 -9.63109 -9.15852 -8.96558 -8.82949 -8.60809 -6.82467 -5.90203 -3.34264 1.68161 2.18958 2.57254 2.64578 3.25407 3.31642 3.38196 3.39584 4.16908 4.19955 4.37612 4.38848 4.58531 4.69173 4.76691 4.93645 5.10928 5.12527 5.17036 5.29985 5.39751 5.46401 5.48105 5.51081 5.54960 5.67712 5.78949 5.79183 5.86381 5.92768 5.95037 6.04137 6.17071 6.28752 6.42844 6.43681 6.55986 6.71583 6.81187 6.99773 7.40593 7.50634 7.51749 7.65416 7.75971 8.18592 8.27140 9.04886 9.67722 10.24383 11.17921 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022806 B = 0.002278 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.428948 B =12288.548919 C =12695.245043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.176 3.824 3 H 0.112 0.888 4 C -0.154 4.154 5 C 0.517 3.483 6 O -0.542 6.542 7 N -0.716 5.716 8 C 0.132 3.868 9 C 0.054 3.946 10 H 0.056 0.944 11 C 0.152 3.848 12 N -0.594 5.594 13 C -0.258 4.258 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.902 5.902 17 Si 0.906 3.094 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.278 1.278 21 C 0.109 3.891 22 C 0.050 3.950 23 O -0.391 6.391 24 N -0.365 5.365 25 C 0.056 3.944 26 C -0.279 4.279 27 C 0.041 3.959 28 N -0.297 5.297 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.403 0.597 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.032 0.968 39 H 0.256 0.744 40 H 0.027 0.973 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.171 0.829 45 H 0.145 0.855 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.230 -10.240 -20.024 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.074 3.926 3 H 0.130 0.870 4 C -0.195 4.195 5 C 0.302 3.698 6 O -0.420 6.420 7 N -0.366 5.366 8 C 0.008 3.992 9 C -0.005 4.005 10 H 0.074 0.926 11 C 0.026 3.974 12 N -0.318 5.318 13 C -0.387 4.387 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.546 5.546 17 Si 0.735 3.265 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.204 1.204 21 C -0.018 4.018 22 C -0.028 4.028 23 O -0.310 6.310 24 N -0.148 5.148 25 C -0.091 4.091 26 C -0.309 4.309 27 C -0.145 4.145 28 N -0.118 5.118 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.237 0.763 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.061 0.939 44 H 0.189 0.811 45 H 0.163 0.837 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.381 -8.286 -19.443 21.138 hybrid contribution 0.715 -0.725 0.455 1.115 sum 0.334 -9.011 -18.988 21.020 Atomic orbital electron populations 1.22330 0.92055 1.03020 1.05204 1.20957 0.95354 0.96987 0.79336 0.87001 1.22065 1.04078 1.00795 0.92583 1.20163 0.79593 0.85642 0.84421 1.90701 1.40210 1.24491 1.86604 1.45963 1.57152 1.27803 1.05682 1.21457 1.01292 0.94757 0.81646 1.23159 0.96641 0.84531 0.96178 0.92618 1.21309 0.99026 0.94771 0.82319 1.44050 1.63560 1.07141 1.17057 1.19198 1.20317 0.91303 1.07865 0.91293 1.25067 0.97675 0.97627 0.99223 1.70010 1.30815 1.06098 1.47638 0.86240 0.81254 0.78975 0.80002 1.21312 1.21602 1.20377 1.21600 0.97355 0.87500 0.95303 1.23010 0.98121 0.93618 0.88027 1.87764 1.69336 1.26068 1.47862 1.48995 1.19375 1.23970 1.22434 1.22529 0.99892 0.91296 0.95354 1.21510 0.99320 1.06709 1.03311 1.23894 0.99299 0.93970 0.97366 1.77402 1.02932 1.23703 1.07764 0.91660 0.92111 0.87715 0.88259 0.88077 0.76257 0.89860 0.90582 0.88562 0.95036 0.93345 0.95537 0.91942 0.89993 0.93853 0.81143 0.83693 0.80194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 8.58 37.16 0.32 -1.19 16 2 C 0.18 1.78 3.05 -67.93 -0.21 1.57 16 3 H 0.11 1.32 7.95 -51.93 -0.41 0.91 16 4 C -0.15 -1.46 5.50 -27.88 -0.15 -1.61 16 5 C 0.52 6.54 7.55 -10.98 -0.08 6.46 16 6 O -0.54 -8.56 13.97 5.55 0.08 -8.48 16 7 N -0.72 -9.24 5.45 -60.29 -0.33 -9.57 16 8 C 0.13 2.10 5.37 -4.04 -0.02 2.08 16 9 C 0.05 0.98 2.87 -26.58 -0.08 0.91 16 10 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 11 C 0.15 3.49 4.73 -3.53 -0.02 3.48 16 12 N -0.59 -14.48 3.05 -171.83 -0.52 -15.00 16 13 C -0.26 -6.86 9.65 -15.06 -0.15 -7.01 16 14 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 15 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 16 N -0.90 -25.52 11.14 55.49 0.62 -24.90 16 17 Si 0.91 21.17 29.59 -169.99 -5.03 16.14 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 21 C 0.11 2.19 6.73 -3.53 -0.02 2.17 16 22 C 0.05 0.84 6.98 37.31 0.26 1.10 16 23 O -0.39 -6.88 10.13 -35.23 -0.36 -7.24 16 24 N -0.37 -3.83 3.53 -54.86 -0.19 -4.02 16 25 C 0.06 0.48 10.59 -17.22 -0.18 0.29 16 26 C -0.28 -2.33 10.80 -40.01 -0.43 -2.77 16 27 C 0.04 0.39 12.03 -17.36 -0.21 0.18 16 28 N -0.30 -3.58 12.58 30.62 0.39 -3.20 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.43 7.16 -51.93 -0.37 0.06 16 31 H 0.10 1.15 5.95 -51.93 -0.31 0.84 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.40 4.48 8.35 -40.82 -0.34 4.14 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.10 2.44 6.14 -51.93 -0.32 2.12 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.17 0.96 7.26 -52.48 -0.38 0.58 16 45 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.18 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -32.18 374.62 -7.93 -40.11 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.17 Total: 4.85 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.06 Total: 5.66 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.04 Total: -56.69 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.28 Total: -15.72 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.18 -7.93 -40.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753655349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.672 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds