Wall clock time and date at job start Tue Mar 31 2020 13:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46824 * 2 1 4 4 C 1.52994 * 109.47087 * 119.99840 * 2 1 3 5 5 N 1.46503 * 109.47146 * 175.00374 * 4 2 1 6 6 C 1.46495 * 119.99816 * 269.99760 * 5 4 2 7 7 C 1.36938 * 120.00169 * 90.00391 * 5 4 2 8 8 H 1.07998 * 120.00234 * 23.63637 * 7 5 4 9 9 C 1.38810 * 119.99947 * 203.64286 * 7 5 4 10 10 N 1.31620 * 119.99926 * 11.27237 * 9 7 5 11 11 Si 1.86802 * 120.00137 * 191.26993 * 9 7 5 12 12 H 1.48497 * 109.46767 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46686 * 119.99916 * 11 9 7 14 14 H 1.48498 * 109.47353 * 240.00242 * 11 9 7 15 15 N 1.46493 * 109.47331 * 240.00207 * 2 1 3 16 16 C 1.34774 * 120.00559 * 84.99960 * 15 2 1 17 17 O 1.21607 * 119.99840 * 359.97438 * 16 15 2 18 18 C 1.47430 * 120.00369 * 179.97438 * 16 15 2 19 19 C 1.38038 * 126.41596 * 0.02651 * 18 16 15 20 20 N 1.34257 * 107.41979 * 179.97438 * 19 18 16 21 21 H 0.96998 * 125.75705 * 180.02562 * 20 19 18 22 22 N 1.39936 * 108.49117 * 359.97438 * 20 19 18 23 23 C 1.30449 * 108.89518 * 359.73961 * 22 20 19 24 24 C 1.50700 * 125.98767 * 180.26570 * 23 22 20 25 25 H 1.09003 * 109.86838 * 164.47074 * 24 23 22 26 26 C 1.54100 * 109.87700 * 285.47520 * 24 23 22 27 27 C 1.54807 * 104.18858 * 121.45752 * 26 24 23 28 28 C 1.54998 * 102.09326 * 20.87836 * 27 26 24 29 29 O 1.43749 * 109.88043 * 43.46136 * 24 23 22 30 30 H 1.08996 * 109.47668 * 300.00291 * 1 2 3 31 31 H 1.09008 * 109.46991 * 60.00346 * 1 2 3 32 32 H 1.09004 * 109.47282 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47141 * 295.00231 * 4 2 1 34 34 H 1.08998 * 109.47529 * 55.00193 * 4 2 1 35 35 H 1.09004 * 109.47283 * 94.57937 * 6 5 4 36 36 H 1.09001 * 109.47524 * 214.57975 * 6 5 4 37 37 H 1.08998 * 109.47700 * 334.58204 * 6 5 4 38 38 H 0.97001 * 119.99917 * 179.97438 * 10 9 7 39 39 H 0.97007 * 120.00027 * 264.99743 * 15 2 1 40 40 H 1.08002 * 126.29176 * 359.94888 * 19 18 16 41 41 H 1.09002 * 110.48512 * 240.13309 * 26 24 23 42 42 H 1.09002 * 110.48752 * 2.64677 * 26 24 23 43 43 H 1.08998 * 110.91267 * 139.08065 * 27 26 24 44 44 H 1.09010 * 110.90734 * 262.68565 * 27 26 24 45 45 H 1.08995 * 110.62061 * 81.47896 * 28 27 26 46 46 H 1.08999 * 110.61977 * 204.48093 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5000 -0.8262 1.1906 6 6 4.1258 -1.9918 0.5613 7 6 4.2798 0.1650 1.7241 8 1 3.8834 0.8069 2.4969 9 6 5.5797 0.3447 1.2716 10 7 5.9916 -0.2791 0.1883 11 14 6.7444 1.4721 2.2000 12 1 6.0432 2.0489 3.3751 13 1 7.9235 0.6954 2.6598 14 1 7.1924 2.5679 1.3034 15 7 2.0183 -0.6905 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8574 1.1615 -2.4119 18 6 2.6391 -0.7131 -3.5607 19 6 3.0036 -2.0416 -3.6485 20 7 3.3909 -2.2693 -4.9137 21 1 3.7007 -3.1176 -5.2676 22 7 3.2713 -1.0768 -5.6359 23 6 2.8191 -0.1456 -4.8421 24 6 2.5413 1.2855 -5.2238 25 1 1.9248 1.7597 -4.4601 26 6 3.8683 2.0538 -5.3774 27 6 3.8407 2.5708 -6.8364 28 6 2.3276 2.5237 -7.1690 29 8 1.8682 1.3311 -6.4931 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7515 -0.1582 2.1369 34 1 1.6054 -1.7197 1.2952 35 1 4.3540 -1.7638 -0.4799 36 1 5.0467 -2.2392 1.0893 37 1 3.4424 -2.8397 0.6062 38 1 6.8998 -0.1532 -0.1281 39 1 2.2491 -1.6317 -1.1526 40 1 2.9817 -2.7648 -2.8467 41 1 3.9091 2.8885 -4.6776 42 1 4.7159 1.3860 -5.2231 43 1 4.2203 3.5909 -6.8949 44 1 4.4043 1.9092 -7.4943 45 1 1.8205 3.4047 -6.7757 46 1 2.1735 2.4391 -8.2447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754322161.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:05 Heat of formation + Delta-G solvation = 14.095523 kcal Electronic energy + Delta-G solvation = -28595.232760 eV Core-core repulsion = 24715.335056 eV Total energy + Delta-G solvation = -3879.897704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.30649 -39.00562 -38.73949 -36.23630 -33.97627 -32.43080 -31.80037 -31.57099 -30.59013 -29.24640 -28.47248 -26.18256 -25.59150 -23.44807 -23.23890 -21.60786 -21.53960 -20.47504 -19.64847 -19.49399 -18.13004 -16.76270 -16.22503 -16.08075 -15.90747 -15.28614 -14.99002 -14.84743 -14.69935 -14.06231 -13.69162 -13.51208 -13.49306 -13.27462 -13.09941 -12.88070 -12.63600 -12.12597 -11.91833 -11.64438 -11.53882 -11.41987 -11.21949 -11.08244 -10.85678 -10.78449 -10.75642 -10.65318 -10.54394 -10.19527 -9.94139 -9.85614 -9.78607 -9.43401 -9.09404 -8.67253 -8.55960 -8.23499 -6.73913 -5.73014 -3.18597 1.73186 2.30772 2.79536 3.38198 3.46125 3.47466 3.85621 3.91119 4.15085 4.50189 4.51639 4.72873 4.86280 4.95543 5.04254 5.25994 5.35652 5.37859 5.50303 5.56400 5.61861 5.70008 5.72657 5.77046 5.84231 5.92362 6.03046 6.05031 6.10134 6.13294 6.25730 6.29680 6.49824 6.51198 6.55529 6.65047 6.94165 6.95765 7.18769 7.25760 7.31534 7.62903 7.67123 7.81146 8.24672 8.39287 8.95393 9.23206 9.85635 10.33684 11.32227 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012126 B = 0.004242 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.603063 B = 6599.360828 C = 7272.828541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.087 0.913 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.254 4.254 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.904 5.904 11 Si 0.901 3.099 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.695 5.695 16 C 0.597 3.403 17 O -0.554 6.554 18 C -0.266 4.266 19 C 0.106 3.894 20 N -0.464 5.464 21 H 0.442 0.558 22 N -0.280 5.280 23 C 0.131 3.869 24 C 0.151 3.849 25 H 0.118 0.882 26 C -0.141 4.141 27 C -0.152 4.152 28 C 0.047 3.953 29 O -0.369 6.369 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.031 0.969 36 H 0.042 0.958 37 H -0.007 1.007 38 H 0.250 0.750 39 H 0.390 0.610 40 H 0.185 0.815 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.292 -3.176 -10.490 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.105 0.895 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.384 4.384 8 H 0.086 0.914 9 C -0.192 4.192 10 N -0.549 5.549 11 Si 0.732 3.268 12 H -0.203 1.203 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.343 5.343 16 C 0.384 3.616 17 O -0.434 6.434 18 C -0.281 4.281 19 C -0.046 4.046 20 N -0.169 5.169 21 H 0.286 0.714 22 N -0.103 5.103 23 C -0.038 4.038 24 C 0.091 3.909 25 H 0.135 0.865 26 C -0.180 4.180 27 C -0.190 4.190 28 C -0.030 4.030 29 O -0.287 6.287 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.012 0.988 38 H 0.060 0.940 39 H 0.224 0.776 40 H 0.202 0.798 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.093 -2.774 -11.805 14.049 hybrid contribution 1.150 -0.141 1.174 1.649 sum -5.943 -2.914 -10.631 12.523 Atomic orbital electron populations 1.22160 0.96950 1.01007 1.01706 1.21835 0.91586 0.99221 0.86204 0.89535 1.21202 0.85740 0.97172 0.94450 1.43868 0.99072 1.20814 1.68133 1.20844 0.94490 0.85070 0.97917 1.19209 0.94523 1.10522 1.14156 0.91400 1.24998 0.98881 0.99021 0.96314 1.70038 1.17049 1.45698 1.22070 0.86228 0.81062 0.80311 0.79207 1.20322 1.21781 1.21785 1.45579 1.66350 1.13311 1.09080 1.17071 0.76699 0.85897 0.81934 1.90647 1.52339 1.15455 1.84936 1.20315 1.18073 0.93650 0.96031 1.23106 0.95737 0.97256 0.88520 1.46097 1.51793 1.11529 1.07525 0.71408 1.77142 1.23456 0.90706 1.18962 1.22145 0.95795 0.95397 0.90474 1.21371 0.94205 0.87802 0.87498 0.86469 1.22907 0.97548 1.00628 0.96888 1.23119 0.97267 1.01947 0.96661 1.23564 0.93183 0.88436 0.97796 1.88954 1.65567 1.43791 1.30412 0.92186 0.92844 0.93323 0.92317 0.94120 0.95043 0.93940 0.98840 0.94018 0.77575 0.79801 0.89688 0.90374 0.90199 0.90566 0.92004 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.48 37.16 0.35 -2.02 16 2 C 0.12 2.19 2.88 -67.94 -0.20 1.99 16 3 H 0.09 1.94 7.58 -51.93 -0.39 1.54 16 4 C 0.14 2.68 5.33 -4.04 -0.02 2.66 16 5 N -0.60 -13.90 2.78 -181.13 -0.50 -14.41 16 6 C 0.16 3.58 7.60 59.84 0.46 4.03 16 7 C -0.25 -6.77 9.66 -15.06 -0.15 -6.91 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 9 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 10 N -0.90 -25.53 10.66 55.49 0.59 -24.94 16 11 Si 0.90 21.84 29.57 -169.99 -5.03 16.82 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 N -0.69 -12.45 4.40 -54.89 -0.24 -12.69 16 16 C 0.60 11.69 7.78 -12.52 -0.10 11.60 16 17 O -0.55 -12.31 14.34 5.27 0.08 -12.23 16 18 C -0.27 -4.61 6.13 -105.07 -0.64 -5.26 16 19 C 0.11 1.42 11.52 -16.56 -0.19 1.23 16 20 N -0.46 -5.82 7.29 30.85 0.22 -5.59 16 21 H 0.44 3.69 8.96 -182.72 -1.64 2.05 16 22 N -0.28 -4.55 12.63 33.90 0.43 -4.12 16 23 C 0.13 2.29 5.94 -82.02 -0.49 1.80 16 24 C 0.15 2.52 3.69 -27.31 -0.10 2.42 16 25 H 0.12 2.16 5.93 -51.93 -0.31 1.85 16 26 C -0.14 -2.09 6.63 -25.20 -0.17 -2.26 16 27 C -0.15 -1.77 7.16 -24.72 -0.18 -1.95 16 28 C 0.05 0.56 7.72 38.21 0.29 0.85 16 29 O -0.37 -5.92 11.19 -35.23 -0.39 -6.31 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.08 8.03 -51.93 -0.42 0.67 16 34 H 0.04 0.67 7.86 -51.93 -0.41 0.26 16 35 H 0.03 0.74 6.90 -51.93 -0.36 0.38 16 36 H 0.04 1.05 7.30 -51.93 -0.38 0.67 16 37 H -0.01 -0.13 7.84 -51.93 -0.41 -0.53 16 38 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 39 H 0.39 6.24 6.09 -40.82 -0.25 5.99 16 40 H 0.19 1.81 7.46 -52.49 -0.39 1.42 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.08 1.25 7.69 -51.93 -0.40 0.85 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -34.05 373.77 -8.70 -42.76 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -8.28 Total: 6.82 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -1.21 Total: 8.27 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: 0.50 Total: -61.75 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.32 Total: -18.55 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.05 -8.70 -42.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754322161.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.852 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds