Wall clock time and date at job start Tue Mar 31 2020 13:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46824 * 2 1 4 4 C 1.52994 * 109.47087 * 119.99840 * 2 1 3 5 5 N 1.46503 * 109.47146 * 175.00374 * 4 2 1 6 6 C 1.46495 * 119.99816 * 269.99760 * 5 4 2 7 7 C 1.36938 * 120.00169 * 90.00391 * 5 4 2 8 8 H 1.07998 * 120.00234 * 23.63637 * 7 5 4 9 9 C 1.38810 * 119.99947 * 203.64286 * 7 5 4 10 10 N 1.31620 * 119.99926 * 11.27237 * 9 7 5 11 11 Si 1.86802 * 120.00137 * 191.26993 * 9 7 5 12 12 H 1.48497 * 109.46767 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46686 * 119.99916 * 11 9 7 14 14 H 1.48498 * 109.47353 * 240.00242 * 11 9 7 15 15 N 1.46493 * 109.47331 * 240.00207 * 2 1 3 16 16 C 1.34774 * 120.00559 * 84.99960 * 15 2 1 17 17 O 1.21607 * 119.99840 * 359.97438 * 16 15 2 18 18 C 1.47430 * 120.00369 * 179.97438 * 16 15 2 19 19 C 1.38038 * 126.41596 * 0.02651 * 18 16 15 20 20 N 1.34257 * 107.41979 * 179.97438 * 19 18 16 21 21 H 0.96998 * 125.75705 * 180.02562 * 20 19 18 22 22 N 1.39936 * 108.49117 * 359.97438 * 20 19 18 23 23 C 1.30449 * 108.89518 * 359.73961 * 22 20 19 24 24 C 1.50700 * 125.98767 * 180.26570 * 23 22 20 25 25 H 1.09003 * 109.86838 * 164.47074 * 24 23 22 26 26 C 1.54100 * 109.87700 * 285.47520 * 24 23 22 27 27 C 1.54807 * 104.18858 * 121.45752 * 26 24 23 28 28 C 1.54998 * 102.09326 * 20.87836 * 27 26 24 29 29 O 1.43749 * 109.88043 * 43.46136 * 24 23 22 30 30 H 1.08996 * 109.47668 * 300.00291 * 1 2 3 31 31 H 1.09008 * 109.46991 * 60.00346 * 1 2 3 32 32 H 1.09004 * 109.47282 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47141 * 295.00231 * 4 2 1 34 34 H 1.08998 * 109.47529 * 55.00193 * 4 2 1 35 35 H 1.09004 * 109.47283 * 94.57937 * 6 5 4 36 36 H 1.09001 * 109.47524 * 214.57975 * 6 5 4 37 37 H 1.08998 * 109.47700 * 334.58204 * 6 5 4 38 38 H 0.97001 * 119.99917 * 179.97438 * 10 9 7 39 39 H 0.97007 * 120.00027 * 264.99743 * 15 2 1 40 40 H 1.08002 * 126.29176 * 359.94888 * 19 18 16 41 41 H 1.09002 * 110.48512 * 240.13309 * 26 24 23 42 42 H 1.09002 * 110.48752 * 2.64677 * 26 24 23 43 43 H 1.08998 * 110.91267 * 139.08065 * 27 26 24 44 44 H 1.09010 * 110.90734 * 262.68565 * 27 26 24 45 45 H 1.08995 * 110.62061 * 81.47896 * 28 27 26 46 46 H 1.08999 * 110.61977 * 204.48093 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5000 -0.8262 1.1906 6 6 4.1258 -1.9918 0.5613 7 6 4.2798 0.1650 1.7241 8 1 3.8834 0.8069 2.4969 9 6 5.5797 0.3447 1.2716 10 7 5.9916 -0.2791 0.1883 11 14 6.7444 1.4721 2.2000 12 1 6.0432 2.0489 3.3751 13 1 7.9235 0.6954 2.6598 14 1 7.1924 2.5679 1.3034 15 7 2.0183 -0.6905 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8574 1.1615 -2.4119 18 6 2.6391 -0.7131 -3.5607 19 6 3.0036 -2.0416 -3.6485 20 7 3.3909 -2.2693 -4.9137 21 1 3.7007 -3.1176 -5.2676 22 7 3.2713 -1.0768 -5.6359 23 6 2.8191 -0.1456 -4.8421 24 6 2.5413 1.2855 -5.2238 25 1 1.9248 1.7597 -4.4601 26 6 3.8683 2.0538 -5.3774 27 6 3.8407 2.5708 -6.8364 28 6 2.3276 2.5237 -7.1690 29 8 1.8682 1.3311 -6.4931 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7515 -0.1582 2.1369 34 1 1.6054 -1.7197 1.2952 35 1 4.3540 -1.7638 -0.4799 36 1 5.0467 -2.2392 1.0893 37 1 3.4424 -2.8397 0.6062 38 1 6.8998 -0.1532 -0.1281 39 1 2.2491 -1.6317 -1.1526 40 1 2.9817 -2.7648 -2.8467 41 1 3.9091 2.8885 -4.6776 42 1 4.7159 1.3860 -5.2231 43 1 4.2203 3.5909 -6.8949 44 1 4.4043 1.9092 -7.4943 45 1 1.8205 3.4047 -6.7757 46 1 2.1735 2.4391 -8.2447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754322161.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:04 Heat of formation + Delta-G solvation = -10.534726 kcal Electronic energy + Delta-G solvation = -28596.300807 eV Core-core repulsion = 24715.335056 eV Total energy + Delta-G solvation = -3880.965751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.50688 -40.23717 -40.11455 -37.90548 -35.67521 -33.62225 -33.21222 -32.89366 -32.25621 -30.53890 -29.59883 -27.91323 -27.34184 -24.61864 -24.56567 -23.23043 -22.60782 -21.92793 -21.06589 -20.76818 -19.36748 -18.68928 -17.49235 -17.29607 -17.02706 -16.93327 -16.54053 -16.14802 -16.03198 -15.57992 -15.31312 -15.03073 -14.79795 -14.60598 -14.51945 -14.30991 -13.83376 -13.67676 -13.36033 -13.03787 -12.83527 -12.74392 -12.69781 -12.62288 -12.48329 -12.24873 -12.21035 -12.00768 -11.97628 -11.78075 -11.72525 -11.63039 -10.98586 -10.71299 -10.59980 -10.43259 -10.01239 -9.63188 -8.65240 -7.78187 -5.23081 0.57667 0.99746 1.43463 1.46988 1.54644 1.76571 2.43431 2.54150 2.60065 2.95927 3.35116 3.37029 3.60763 3.75050 3.79252 3.93778 3.98978 4.15493 4.23455 4.36152 4.40244 4.42524 4.50229 4.60879 4.64760 4.77709 4.83739 4.86548 4.89269 4.90992 4.97874 5.01083 5.07771 5.11950 5.22719 5.31252 5.43518 5.46857 5.70653 5.81938 5.84618 5.87293 6.25322 6.39377 6.48545 6.84710 7.23618 7.51670 7.96267 8.35671 9.23665 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012126 B = 0.004242 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.603063 B = 6599.360828 C = 7272.828541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.124 3.876 3 H 0.037 0.963 4 C 0.143 3.857 5 N -0.611 5.611 6 C 0.172 3.828 7 C -0.256 4.256 8 H 0.065 0.935 9 C -0.046 4.046 10 N -0.926 5.926 11 Si 0.953 3.047 12 H -0.268 1.268 13 H -0.291 1.291 14 H -0.302 1.302 15 N -0.688 5.688 16 C 0.589 3.411 17 O -0.594 6.594 18 C -0.308 4.308 19 C 0.135 3.865 20 N -0.443 5.443 21 H 0.462 0.538 22 N -0.297 5.297 23 C 0.114 3.886 24 C 0.150 3.850 25 H 0.091 0.909 26 C -0.142 4.142 27 C -0.141 4.141 28 C 0.040 3.960 29 O -0.388 6.388 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.015 0.985 36 H 0.008 0.992 37 H 0.040 0.960 38 H 0.242 0.758 39 H 0.402 0.598 40 H 0.226 0.774 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.099 -4.825 -10.603 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 H 0.055 0.945 4 C 0.016 3.984 5 N -0.333 5.333 6 C 0.027 3.973 7 C -0.387 4.387 8 H 0.083 0.917 9 C -0.241 4.241 10 N -0.573 5.573 11 Si 0.783 3.217 12 H -0.192 1.192 13 H -0.218 1.218 14 H -0.230 1.230 15 N -0.337 5.337 16 C 0.378 3.622 17 O -0.476 6.476 18 C -0.323 4.323 19 C -0.019 4.019 20 N -0.150 5.150 21 H 0.311 0.689 22 N -0.121 5.121 23 C -0.055 4.055 24 C 0.090 3.910 25 H 0.109 0.891 26 C -0.181 4.181 27 C -0.178 4.178 28 C -0.036 4.036 29 O -0.307 6.307 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.034 0.966 36 H 0.027 0.973 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.238 0.762 40 H 0.242 0.758 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.123 0.877 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.920 -4.468 -11.920 14.992 hybrid contribution 1.339 0.320 1.224 1.842 sum -6.581 -4.148 -10.696 13.225 Atomic orbital electron populations 1.22023 0.93890 1.02807 1.01745 1.21653 0.93859 0.96521 0.86275 0.94506 1.21367 0.83225 0.99317 0.94454 1.44077 1.00833 1.20449 1.67955 1.20667 0.94260 0.86106 0.96222 1.19477 0.94960 1.10559 1.13698 0.91718 1.25590 1.00377 1.00803 0.97348 1.70176 1.16679 1.47161 1.23278 0.85413 0.79496 0.78542 0.78289 1.19245 1.21762 1.23012 1.45496 1.66012 1.13697 1.08451 1.17463 0.76236 0.85640 0.82899 1.90619 1.54138 1.17233 1.85658 1.20321 1.21057 0.95533 0.95345 1.23580 0.92713 0.96315 0.89298 1.46116 1.50259 1.11516 1.07110 0.68938 1.77061 1.23928 0.91582 1.19501 1.22291 0.96307 0.95911 0.90947 1.21184 0.94487 0.88020 0.87280 0.89120 1.22877 0.96043 0.99926 0.99218 1.23104 0.97378 1.03294 0.94071 1.23857 0.93214 0.87540 0.98953 1.88918 1.66078 1.45605 1.30142 0.90588 0.94418 0.90517 0.91962 0.90343 0.96640 0.97264 0.94175 0.94906 0.76247 0.75798 0.90326 0.92038 0.87667 0.90207 0.90974 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.48 71.98 0.68 -3.40 16 2 C 0.12 4.49 2.88 44.99 0.13 4.62 16 3 H 0.04 1.70 7.58 -2.39 -0.02 1.68 16 4 C 0.14 5.05 5.33 86.38 0.46 5.51 16 5 N -0.61 -27.74 2.78 -726.96 -2.02 -29.76 16 6 C 0.17 7.34 7.60 127.77 0.97 8.31 16 7 C -0.26 -13.62 9.66 84.03 0.81 -12.80 16 8 H 0.07 3.41 7.85 -2.91 -0.02 3.39 16 9 C -0.05 -2.52 5.13 84.86 0.44 -2.08 16 10 N -0.93 -53.14 10.66 21.65 0.23 -52.91 16 11 Si 0.95 45.49 29.57 68.60 2.03 47.52 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 14 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 15 N -0.69 -24.11 4.40 -445.82 -1.96 -26.07 16 16 C 0.59 23.60 7.78 86.67 0.67 24.27 16 17 O -0.59 -27.90 14.34 -4.05 -0.06 -27.96 16 18 C -0.31 -10.70 6.13 -20.15 -0.12 -10.83 16 19 C 0.13 3.34 11.52 84.27 0.97 4.31 16 20 N -0.44 -10.21 7.29 -56.32 -0.41 -10.62 16 21 H 0.46 6.40 8.96 -213.43 -1.91 4.49 16 22 N -0.30 -9.51 12.63 -46.67 -0.59 -10.10 16 23 C 0.11 4.06 5.94 43.52 0.26 4.32 16 24 C 0.15 5.26 3.69 30.22 0.11 5.37 16 25 H 0.09 3.62 5.93 -2.39 -0.01 3.61 16 26 C -0.14 -4.39 6.63 31.58 0.21 -4.18 16 27 C -0.14 -3.17 7.16 31.89 0.23 -2.95 16 28 C 0.04 0.92 7.72 72.67 0.56 1.48 16 29 O -0.39 -12.65 11.19 -148.98 -1.67 -14.32 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.06 2.17 8.03 -2.39 -0.02 2.15 16 34 H 0.08 2.22 7.86 -2.39 -0.02 2.20 16 35 H 0.02 0.71 6.90 -2.38 -0.02 0.69 16 36 H 0.01 0.42 7.30 -2.39 -0.02 0.41 16 37 H 0.04 1.32 7.84 -2.39 -0.02 1.30 16 38 H 0.24 13.78 8.31 -92.71 -0.77 13.01 16 39 H 0.40 11.89 6.09 -92.70 -0.56 11.32 16 40 H 0.23 3.53 7.46 -2.91 -0.02 3.51 16 41 H 0.08 2.44 8.14 -2.39 -0.02 2.43 16 42 H 0.06 2.06 7.69 -2.39 -0.02 2.05 16 43 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.08 1.74 8.14 -2.38 -0.02 1.73 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.12 2.03 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -77.48 373.77 0.47 -77.01 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -1.47 Total: 25.25 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 6.38 Total: 21.96 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -4.75 Total: -129.47 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -1.72 Total: -42.28 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -77.48 0.47 -77.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754322161.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.479 kcal (2) G-P(sol) polarization free energy of solvation -77.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds