Wall clock time and date at job start Tue Mar 31 2020 13:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.46889 * 2 1 4 4 C 1.53003 * 109.46904 * 120.00286 * 2 1 3 5 5 N 1.46501 * 109.46755 * 175.00022 * 4 2 1 6 6 C 1.46499 * 120.00281 * 269.99761 * 5 4 2 7 7 C 1.36938 * 119.99909 * 89.99548 * 5 4 2 8 8 H 1.08001 * 120.00290 * 23.65142 * 7 5 4 9 9 C 1.38814 * 120.00366 * 203.64138 * 7 5 4 10 10 N 1.31621 * 119.99366 * 11.27694 * 9 7 5 11 11 Si 1.86799 * 120.00314 * 191.26985 * 9 7 5 12 12 H 1.48500 * 109.47124 * 60.00390 * 11 9 7 13 13 H 1.48497 * 109.46862 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47077 * 300.00147 * 11 9 7 15 15 N 1.46505 * 109.47033 * 240.00057 * 2 1 3 16 16 C 1.34776 * 119.99649 * 85.00228 * 15 2 1 17 17 O 1.21605 * 120.00122 * 359.97438 * 16 15 2 18 18 C 1.47430 * 119.99935 * 180.02562 * 16 15 2 19 19 C 1.38049 * 126.41274 * 0.02562 * 18 16 15 20 20 N 1.34257 * 107.41503 * 179.97438 * 19 18 16 21 21 H 0.97001 * 125.74995 * 180.02562 * 20 19 18 22 22 N 1.39932 * 108.49203 * 359.78790 * 20 19 18 23 23 C 1.30450 * 108.89927 * 0.36787 * 22 20 19 24 24 C 1.50701 * 125.99024 * 179.90834 * 23 22 20 25 25 H 1.08993 * 109.82408 * 195.38518 * 24 23 22 26 26 C 1.54381 * 109.83343 * 74.49680 * 24 23 22 27 27 C 1.55448 * 102.18751 * 219.18513 * 26 24 23 28 28 C 1.54944 * 100.98970 * 34.03857 * 27 26 24 29 29 O 1.43233 * 109.82806 * 316.27221 * 24 23 22 30 30 H 1.09005 * 109.46994 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47333 * 299.99521 * 1 2 3 32 32 H 1.08995 * 109.47057 * 60.00124 * 1 2 3 33 33 H 1.09003 * 109.46962 * 294.99752 * 4 2 1 34 34 H 1.08997 * 109.47061 * 55.00314 * 4 2 1 35 35 H 1.09007 * 109.47161 * 94.57922 * 6 5 4 36 36 H 1.08997 * 109.47602 * 214.57940 * 6 5 4 37 37 H 1.08996 * 109.47154 * 334.58544 * 6 5 4 38 38 H 0.97003 * 119.99464 * 180.02562 * 10 9 7 39 39 H 0.96996 * 119.99979 * 264.99727 * 15 2 1 40 40 H 1.07996 * 126.29111 * 0.02562 * 19 18 16 41 41 H 1.09006 * 110.84569 * 337.32701 * 26 24 23 42 42 H 1.09004 * 110.84335 * 100.93723 * 26 24 23 43 43 H 1.09002 * 111.05588 * 276.12180 * 27 26 24 44 44 H 1.09002 * 111.18302 * 152.01465 * 27 26 24 45 45 H 1.09003 * 110.30679 * 204.69127 * 28 27 26 46 46 H 1.08996 * 110.39217 * 82.56553 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1259 -1.9919 0.5612 7 6 4.2798 0.1648 1.7239 8 1 3.8836 0.8067 2.4969 9 6 5.5798 0.3446 1.2714 10 7 5.9916 -0.2793 0.1881 11 14 6.7444 1.4722 2.1997 12 1 6.9138 0.9740 3.5883 13 1 8.0627 1.4928 1.5165 14 1 6.1824 2.8463 2.2318 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8575 1.1616 -2.4118 18 6 2.6379 -0.7132 -3.5611 19 6 3.0013 -2.0421 -3.6492 20 7 3.3878 -2.2699 -4.9146 21 1 3.6968 -3.1185 -5.2688 22 7 3.2647 -1.0783 -5.6377 23 6 2.8240 -0.1442 -4.8408 24 6 2.5543 1.2891 -5.2204 25 1 2.4598 1.8981 -4.3214 26 6 1.2554 1.3756 -6.0504 27 6 1.6201 2.4429 -7.1201 28 6 3.1260 2.1462 -7.3320 29 8 3.6236 1.7858 -6.0336 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7516 -0.1584 2.1370 34 1 1.6054 -1.7199 1.2951 35 1 4.3540 -1.7639 -0.4801 36 1 5.0468 -2.2393 1.0891 37 1 3.4424 -2.8398 0.6059 38 1 6.9001 -0.1539 -0.1279 39 1 2.2491 -1.6317 -1.1527 40 1 2.9781 -2.7657 -2.8478 41 1 1.0303 0.4177 -6.5194 42 1 0.4224 1.7119 -5.4330 43 1 1.4688 3.4513 -6.7348 44 1 1.0558 2.2877 -8.0397 45 1 3.6385 3.0349 -7.7004 46 1 3.2556 1.3190 -8.0298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754322162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:08 Heat of formation + Delta-G solvation = 14.047770 kcal Electronic energy + Delta-G solvation = -28558.468292 eV Core-core repulsion = 24678.568517 eV Total energy + Delta-G solvation = -3879.899775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.30685 -39.04475 -38.73169 -36.22002 -33.95737 -32.40886 -31.86958 -31.55814 -30.56894 -29.25100 -28.55984 -26.16571 -25.56549 -23.38176 -23.24311 -21.71101 -21.53843 -20.45723 -19.62721 -19.45309 -18.12900 -16.73489 -16.46291 -16.07646 -15.96883 -15.27326 -15.00229 -14.79266 -14.61986 -14.02854 -13.64783 -13.53289 -13.42436 -13.29806 -13.12604 -12.83796 -12.68395 -12.11772 -11.90794 -11.72891 -11.54301 -11.39802 -11.26225 -11.07919 -10.85570 -10.81763 -10.77732 -10.74213 -10.52506 -10.19241 -9.94924 -9.81802 -9.70261 -9.40603 -9.09245 -8.66299 -8.52488 -8.22278 -6.70956 -5.69283 -3.15200 1.73212 2.30995 2.80067 3.43450 3.48998 3.49216 3.79558 4.00762 4.16706 4.43698 4.54892 4.58144 4.81347 4.90604 5.01977 5.27415 5.34101 5.38042 5.52757 5.56360 5.62359 5.66856 5.71910 5.75894 5.77311 5.86428 5.93210 6.00176 6.04841 6.13795 6.27377 6.31037 6.51191 6.51711 6.56554 6.65596 6.95485 7.11470 7.19697 7.27102 7.32985 7.65406 7.66879 7.83744 8.25368 8.42824 8.96024 9.26508 9.88868 10.36805 11.35996 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012642 B = 0.004088 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.353361 B = 6847.628050 C = 7379.628941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 H 0.087 0.913 4 C 0.143 3.857 5 N -0.596 5.596 6 C 0.162 3.838 7 C -0.259 4.259 8 H 0.067 0.933 9 C 0.008 3.992 10 N -0.903 5.903 11 Si 0.903 3.097 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.283 1.283 15 N -0.695 5.695 16 C 0.597 3.403 17 O -0.554 6.554 18 C -0.265 4.265 19 C 0.106 3.894 20 N -0.465 5.465 21 H 0.441 0.559 22 N -0.285 5.285 23 C 0.120 3.880 24 C 0.153 3.847 25 H 0.130 0.870 26 C -0.139 4.139 27 C -0.155 4.155 28 C 0.050 3.950 29 O -0.367 6.367 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.031 0.969 36 H 0.042 0.958 37 H -0.007 1.007 38 H 0.252 0.748 39 H 0.390 0.610 40 H 0.185 0.815 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.981 -4.485 -11.770 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.011 3.989 3 H 0.105 0.895 4 C 0.015 3.985 5 N -0.318 5.318 6 C 0.017 3.983 7 C -0.388 4.388 8 H 0.085 0.915 9 C -0.191 4.191 10 N -0.547 5.547 11 Si 0.733 3.267 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.209 1.209 15 N -0.343 5.343 16 C 0.384 3.616 17 O -0.434 6.434 18 C -0.280 4.280 19 C -0.046 4.046 20 N -0.169 5.169 21 H 0.285 0.715 22 N -0.108 5.108 23 C -0.049 4.049 24 C 0.094 3.906 25 H 0.147 0.853 26 C -0.178 4.178 27 C -0.192 4.192 28 C -0.027 4.027 29 O -0.285 6.285 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.011 0.989 38 H 0.062 0.938 39 H 0.224 0.776 40 H 0.202 0.798 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.396 -3.908 -12.960 17.068 hybrid contribution 0.775 -0.358 1.015 1.326 sum -9.622 -4.266 -11.945 15.920 Atomic orbital electron populations 1.22153 0.96984 1.00948 1.01664 1.21848 0.91538 0.99279 0.86246 0.89511 1.21197 0.85789 0.97110 0.94438 1.43844 0.99034 1.20803 1.68150 1.20845 0.94475 0.85050 0.97937 1.19107 0.94590 1.10757 1.14358 0.91508 1.25004 0.98887 0.98957 0.96247 1.70012 1.17260 1.45560 1.21915 0.86368 0.80390 0.80896 0.79064 1.21181 1.21724 1.20893 1.45579 1.66338 1.13293 1.09098 1.17077 0.76708 0.85879 0.81952 1.90644 1.52227 1.15390 1.85099 1.20335 1.18157 0.93657 0.95893 1.23107 0.95545 0.97425 0.88572 1.46080 1.51805 1.11525 1.07537 0.71460 1.77083 1.23819 0.90603 1.19313 1.22609 0.95863 0.95862 0.90532 1.21446 0.85958 0.87120 0.96120 0.85259 1.23129 0.97750 0.99780 0.97118 1.23300 0.96587 0.99927 0.99416 1.23368 0.93362 0.99710 0.86258 1.88539 1.32875 1.83226 1.23854 0.93355 0.92193 0.92899 0.92344 0.94169 0.95043 0.93942 0.98890 0.93828 0.77592 0.79842 0.90631 0.89300 0.90095 0.90033 0.89841 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.48 37.16 0.35 -1.98 16 2 C 0.12 2.19 2.88 -67.93 -0.20 1.99 16 3 H 0.09 1.96 7.58 -51.93 -0.39 1.57 16 4 C 0.14 2.71 5.33 -4.04 -0.02 2.69 16 5 N -0.60 -14.09 2.78 -181.12 -0.50 -14.59 16 6 C 0.16 3.64 7.61 59.85 0.46 4.09 16 7 C -0.26 -6.99 9.66 -15.06 -0.15 -7.13 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.01 0.22 5.13 -17.43 -0.09 0.13 16 10 N -0.90 -26.11 10.66 55.49 0.59 -25.52 16 11 Si 0.90 22.27 29.57 -169.99 -5.03 17.25 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 N -0.69 -12.47 4.40 -54.88 -0.24 -12.72 16 16 C 0.60 11.69 7.78 -12.52 -0.10 11.59 16 17 O -0.55 -12.29 14.33 5.27 0.08 -12.22 16 18 C -0.27 -4.60 6.13 -105.07 -0.64 -5.24 16 19 C 0.11 1.41 11.52 -16.56 -0.19 1.22 16 20 N -0.46 -5.79 7.29 30.85 0.22 -5.57 16 21 H 0.44 3.67 8.96 -182.72 -1.64 2.03 16 22 N -0.29 -4.57 12.63 33.89 0.43 -4.14 16 23 C 0.12 2.09 6.02 -82.02 -0.49 1.59 16 24 C 0.15 2.55 3.80 -27.16 -0.10 2.44 16 25 H 0.13 2.46 5.92 -51.93 -0.31 2.15 16 26 C -0.14 -1.76 6.55 -24.71 -0.16 -1.93 16 27 C -0.15 -1.61 7.16 -24.40 -0.17 -1.78 16 28 C 0.05 0.61 7.78 38.18 0.30 0.91 16 29 O -0.37 -6.28 11.00 -35.23 -0.39 -6.67 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 34 H 0.04 0.66 7.86 -51.93 -0.41 0.26 16 35 H 0.03 0.75 6.90 -51.92 -0.36 0.39 16 36 H 0.04 1.06 7.30 -51.93 -0.38 0.68 16 37 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 38 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.39 6.26 6.09 -40.82 -0.25 6.01 16 40 H 0.18 1.82 7.46 -52.49 -0.39 1.43 16 41 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -34.84 373.89 -8.70 -43.54 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -8.29 Total: 6.40 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -1.21 Total: 8.60 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 0.50 Total: -62.53 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.31 Total: -18.89 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.84 -8.70 -43.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754322162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.590 kcal (2) G-P(sol) polarization free energy of solvation -34.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds