Wall clock time and date at job start Tue Mar 31 2020 13:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.46889 * 2 1 4 4 C 1.53003 * 109.46904 * 120.00286 * 2 1 3 5 5 N 1.46501 * 109.46755 * 175.00022 * 4 2 1 6 6 C 1.46499 * 120.00281 * 269.99761 * 5 4 2 7 7 C 1.36938 * 119.99909 * 89.99548 * 5 4 2 8 8 H 1.08001 * 120.00290 * 23.65142 * 7 5 4 9 9 C 1.38814 * 120.00366 * 203.64138 * 7 5 4 10 10 N 1.31621 * 119.99366 * 11.27694 * 9 7 5 11 11 Si 1.86799 * 120.00314 * 191.26985 * 9 7 5 12 12 H 1.48500 * 109.47124 * 60.00390 * 11 9 7 13 13 H 1.48497 * 109.46862 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47077 * 300.00147 * 11 9 7 15 15 N 1.46505 * 109.47033 * 240.00057 * 2 1 3 16 16 C 1.34776 * 119.99649 * 85.00228 * 15 2 1 17 17 O 1.21605 * 120.00122 * 359.97438 * 16 15 2 18 18 C 1.47430 * 119.99935 * 180.02562 * 16 15 2 19 19 C 1.38049 * 126.41274 * 0.02562 * 18 16 15 20 20 N 1.34257 * 107.41503 * 179.97438 * 19 18 16 21 21 H 0.97001 * 125.74995 * 180.02562 * 20 19 18 22 22 N 1.39932 * 108.49203 * 359.78790 * 20 19 18 23 23 C 1.30450 * 108.89927 * 0.36787 * 22 20 19 24 24 C 1.50701 * 125.99024 * 179.90834 * 23 22 20 25 25 H 1.08993 * 109.82408 * 195.38518 * 24 23 22 26 26 C 1.54381 * 109.83343 * 74.49680 * 24 23 22 27 27 C 1.55448 * 102.18751 * 219.18513 * 26 24 23 28 28 C 1.54944 * 100.98970 * 34.03857 * 27 26 24 29 29 O 1.43233 * 109.82806 * 316.27221 * 24 23 22 30 30 H 1.09005 * 109.46994 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47333 * 299.99521 * 1 2 3 32 32 H 1.08995 * 109.47057 * 60.00124 * 1 2 3 33 33 H 1.09003 * 109.46962 * 294.99752 * 4 2 1 34 34 H 1.08997 * 109.47061 * 55.00314 * 4 2 1 35 35 H 1.09007 * 109.47161 * 94.57922 * 6 5 4 36 36 H 1.08997 * 109.47602 * 214.57940 * 6 5 4 37 37 H 1.08996 * 109.47154 * 334.58544 * 6 5 4 38 38 H 0.97003 * 119.99464 * 180.02562 * 10 9 7 39 39 H 0.96996 * 119.99979 * 264.99727 * 15 2 1 40 40 H 1.07996 * 126.29111 * 0.02562 * 19 18 16 41 41 H 1.09006 * 110.84569 * 337.32701 * 26 24 23 42 42 H 1.09004 * 110.84335 * 100.93723 * 26 24 23 43 43 H 1.09002 * 111.05588 * 276.12180 * 27 26 24 44 44 H 1.09002 * 111.18302 * 152.01465 * 27 26 24 45 45 H 1.09003 * 110.30679 * 204.69127 * 28 27 26 46 46 H 1.08996 * 110.39217 * 82.56553 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1259 -1.9919 0.5612 7 6 4.2798 0.1648 1.7239 8 1 3.8836 0.8067 2.4969 9 6 5.5798 0.3446 1.2714 10 7 5.9916 -0.2793 0.1881 11 14 6.7444 1.4722 2.1997 12 1 6.9138 0.9740 3.5883 13 1 8.0627 1.4928 1.5165 14 1 6.1824 2.8463 2.2318 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8575 1.1616 -2.4118 18 6 2.6379 -0.7132 -3.5611 19 6 3.0013 -2.0421 -3.6492 20 7 3.3878 -2.2699 -4.9146 21 1 3.6968 -3.1185 -5.2688 22 7 3.2647 -1.0783 -5.6377 23 6 2.8240 -0.1442 -4.8408 24 6 2.5543 1.2891 -5.2204 25 1 2.4598 1.8981 -4.3214 26 6 1.2554 1.3756 -6.0504 27 6 1.6201 2.4429 -7.1201 28 6 3.1260 2.1462 -7.3320 29 8 3.6236 1.7858 -6.0336 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7516 -0.1584 2.1370 34 1 1.6054 -1.7199 1.2951 35 1 4.3540 -1.7639 -0.4801 36 1 5.0468 -2.2393 1.0891 37 1 3.4424 -2.8398 0.6059 38 1 6.9001 -0.1539 -0.1279 39 1 2.2491 -1.6317 -1.1527 40 1 2.9781 -2.7657 -2.8478 41 1 1.0303 0.4177 -6.5194 42 1 0.4224 1.7119 -5.4330 43 1 1.4688 3.4513 -6.7348 44 1 1.0558 2.2877 -8.0397 45 1 3.6385 3.0349 -7.7004 46 1 3.2556 1.3190 -8.0298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754322162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:07 Heat of formation + Delta-G solvation = -11.489630 kcal Electronic energy + Delta-G solvation = -28559.575676 eV Core-core repulsion = 24678.568517 eV Total energy + Delta-G solvation = -3881.007159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.49524 -40.24181 -40.12398 -37.90293 -35.67219 -33.58329 -33.21125 -32.90405 -32.25185 -30.53248 -29.65881 -27.91637 -27.33957 -24.61756 -24.47379 -23.23660 -22.63479 -21.91665 -21.05603 -20.68443 -19.36185 -18.69299 -17.55594 -17.44111 -17.04815 -16.93196 -16.54528 -16.19665 -15.87308 -15.55827 -15.28493 -15.05773 -14.76306 -14.55812 -14.45352 -14.28752 -13.84610 -13.68714 -13.34946 -13.03179 -12.77674 -12.72913 -12.64518 -12.60781 -12.53402 -12.24773 -12.20727 -12.01532 -12.00611 -11.83034 -11.77803 -11.62749 -10.88964 -10.72918 -10.58644 -10.38530 -10.00273 -9.61962 -8.65599 -7.78817 -5.23702 0.58197 1.01531 1.44855 1.46638 1.51849 1.78271 2.39743 2.53732 2.66244 3.01523 3.34463 3.36518 3.53819 3.73541 3.79161 3.95645 4.03940 4.20527 4.24462 4.36016 4.42169 4.42379 4.51280 4.62923 4.68302 4.78346 4.83888 4.84989 4.89834 4.91906 4.98196 5.02234 5.08033 5.20326 5.26142 5.32937 5.42725 5.47513 5.69436 5.82008 5.87288 6.02017 6.26164 6.38489 6.49359 6.85534 7.23002 7.52596 7.96219 8.35158 9.22726 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012642 B = 0.004088 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.353361 B = 6847.628050 C = 7379.628941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.124 3.876 3 H 0.034 0.966 4 C 0.143 3.857 5 N -0.611 5.611 6 C 0.172 3.828 7 C -0.259 4.259 8 H 0.066 0.934 9 C -0.046 4.046 10 N -0.927 5.927 11 Si 0.954 3.046 12 H -0.274 1.274 13 H -0.299 1.299 14 H -0.285 1.285 15 N -0.688 5.688 16 C 0.589 3.411 17 O -0.593 6.593 18 C -0.308 4.308 19 C 0.134 3.866 20 N -0.444 5.444 21 H 0.461 0.539 22 N -0.301 5.301 23 C 0.104 3.896 24 C 0.147 3.853 25 H 0.094 0.906 26 C -0.131 4.131 27 C -0.142 4.142 28 C 0.040 3.960 29 O -0.400 6.400 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.014 0.986 36 H 0.008 0.992 37 H 0.041 0.959 38 H 0.241 0.759 39 H 0.401 0.599 40 H 0.224 0.776 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.509 -6.394 -12.033 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 H 0.053 0.947 4 C 0.016 3.984 5 N -0.333 5.333 6 C 0.028 3.972 7 C -0.390 4.390 8 H 0.083 0.917 9 C -0.242 4.242 10 N -0.573 5.573 11 Si 0.784 3.216 12 H -0.200 1.200 13 H -0.226 1.226 14 H -0.211 1.211 15 N -0.337 5.337 16 C 0.377 3.623 17 O -0.476 6.476 18 C -0.323 4.323 19 C -0.020 4.020 20 N -0.151 5.151 21 H 0.310 0.690 22 N -0.124 5.124 23 C -0.064 4.064 24 C 0.087 3.913 25 H 0.112 0.888 26 C -0.170 4.170 27 C -0.180 4.180 28 C -0.036 4.036 29 O -0.320 6.320 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.032 0.968 36 H 0.027 0.973 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.237 0.763 40 H 0.241 0.759 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.131 0.869 45 H 0.118 0.882 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.949 -5.863 -13.224 18.762 hybrid contribution 1.227 0.186 1.118 1.670 sum -10.723 -5.677 -12.106 17.139 Atomic orbital electron populations 1.22010 0.93661 1.02849 1.01805 1.21659 0.94018 0.96420 0.86283 0.94718 1.21378 0.83161 0.99347 0.94505 1.44065 1.00878 1.20418 1.67964 1.20662 0.94281 0.86139 0.96143 1.19417 0.95006 1.10739 1.13846 0.91667 1.25618 1.00462 1.00814 0.97305 1.70168 1.16731 1.47194 1.23251 0.85541 0.78334 0.79310 0.78453 1.20026 1.22590 1.21147 1.45499 1.66035 1.13666 1.08476 1.17478 0.76251 0.85613 0.82925 1.90618 1.54015 1.17158 1.85825 1.20338 1.21165 0.95530 0.95234 1.23570 0.92582 0.96503 0.89363 1.46107 1.50272 1.11562 1.07120 0.69007 1.77010 1.24190 0.91422 1.19793 1.22750 0.96299 0.96391 0.90965 1.21320 0.87790 0.86608 0.95554 0.88847 1.23075 0.95830 1.00847 0.97227 1.23298 0.95418 0.99345 0.99914 1.23642 0.94856 1.00607 0.84453 1.88487 1.34104 1.83494 1.25871 0.90441 0.90670 0.94204 0.91979 0.90260 0.96807 0.97297 0.94061 0.94943 0.76282 0.75932 0.90210 0.89144 0.89599 0.86916 0.88202 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.48 71.98 0.68 -3.28 16 2 C 0.12 4.48 2.88 44.99 0.13 4.61 16 3 H 0.03 1.62 7.58 -2.39 -0.02 1.60 16 4 C 0.14 5.09 5.33 86.38 0.46 5.55 16 5 N -0.61 -28.21 2.78 -726.93 -2.02 -30.23 16 6 C 0.17 7.49 7.61 127.77 0.97 8.46 16 7 C -0.26 -14.04 9.66 84.03 0.81 -13.23 16 8 H 0.07 3.48 7.85 -2.91 -0.02 3.45 16 9 C -0.05 -2.62 5.13 84.86 0.44 -2.18 16 10 N -0.93 -54.69 10.66 21.65 0.23 -54.46 16 11 Si 0.95 46.55 29.57 68.60 2.03 48.58 16 12 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 13 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 14 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 15 N -0.69 -24.19 4.40 -445.79 -1.96 -26.15 16 16 C 0.59 23.60 7.78 86.66 0.67 24.27 16 17 O -0.59 -27.92 14.33 -4.05 -0.06 -27.98 16 18 C -0.31 -10.68 6.13 -20.15 -0.12 -10.80 16 19 C 0.13 3.31 11.52 84.28 0.97 4.28 16 20 N -0.44 -10.15 7.29 -56.32 -0.41 -10.56 16 21 H 0.46 6.35 8.96 -213.43 -1.91 4.43 16 22 N -0.30 -9.44 12.63 -46.68 -0.59 -10.03 16 23 C 0.10 3.69 6.02 43.51 0.26 3.95 16 24 C 0.15 5.13 3.80 30.32 0.12 5.24 16 25 H 0.09 3.89 5.92 -2.39 -0.01 3.87 16 26 C -0.13 -3.34 6.55 31.91 0.21 -3.13 16 27 C -0.14 -2.79 7.16 32.10 0.23 -2.56 16 28 C 0.04 0.97 7.78 72.65 0.57 1.53 16 29 O -0.40 -14.23 11.00 -148.98 -1.64 -15.87 16 30 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 2.18 8.03 -2.39 -0.02 2.16 16 34 H 0.08 2.25 7.86 -2.39 -0.02 2.23 16 35 H 0.01 0.65 6.90 -2.38 -0.02 0.63 16 36 H 0.01 0.41 7.30 -2.39 -0.02 0.40 16 37 H 0.04 1.37 7.84 -2.39 -0.02 1.35 16 38 H 0.24 14.27 8.31 -92.71 -0.77 13.50 16 39 H 0.40 11.93 6.09 -92.71 -0.56 11.37 16 40 H 0.22 3.55 7.46 -2.91 -0.02 3.53 16 41 H 0.08 1.93 7.84 -2.38 -0.02 1.92 16 42 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -80.05 373.89 0.51 -79.54 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -1.47 Total: 24.45 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: 6.39 Total: 22.71 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -4.75 Total: -131.44 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -1.70 Total: -43.84 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -80.05 0.51 -79.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754322162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.054 kcal (2) G-P(sol) polarization free energy of solvation -80.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds