Wall clock time and date at job start Tue Mar 31 2020 13:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46857 * 2 1 4 4 C 1.53000 * 109.47225 * 240.00799 * 2 1 3 5 5 N 1.46498 * 109.47381 * 185.00087 * 4 2 1 6 6 C 1.46497 * 120.00206 * 89.99429 * 5 4 2 7 7 C 1.36939 * 119.99675 * 269.99551 * 5 4 2 8 8 H 1.08000 * 120.00024 * 22.04908 * 7 5 4 9 9 C 1.38813 * 119.99953 * 202.04696 * 7 5 4 10 10 N 1.31621 * 120.00121 * 13.92758 * 9 7 5 11 11 Si 1.86794 * 119.99996 * 193.92673 * 9 7 5 12 12 H 1.48502 * 109.47382 * 60.00162 * 11 9 7 13 13 H 1.48496 * 109.47482 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47341 * 299.99976 * 11 9 7 15 15 N 1.46501 * 109.47425 * 120.00446 * 2 1 3 16 16 C 1.34773 * 119.99808 * 274.72620 * 15 2 1 17 17 O 1.21607 * 120.00249 * 359.97438 * 16 15 2 18 18 C 1.47426 * 120.00154 * 180.02562 * 16 15 2 19 19 C 1.38050 * 126.41158 * 359.68086 * 18 16 15 20 20 N 1.34255 * 107.41670 * 179.87451 * 19 18 16 21 21 H 0.97001 * 125.75425 * 180.14443 * 20 19 18 22 22 N 1.39938 * 108.49130 * 0.39931 * 20 19 18 23 23 C 1.30441 * 108.89661 * 359.74699 * 22 20 19 24 24 C 1.50708 * 125.99010 * 179.97438 * 23 22 20 25 25 H 1.08999 * 109.82298 * 195.74191 * 24 23 22 26 26 C 1.54381 * 109.82863 * 74.85615 * 24 23 22 27 27 C 1.55449 * 102.18321 * 219.18448 * 26 24 23 28 28 C 1.54947 * 100.99389 * 34.04022 * 27 26 24 29 29 O 1.43240 * 109.82473 * 316.63056 * 24 23 22 30 30 H 1.08999 * 109.46955 * 299.99431 * 1 2 3 31 31 H 1.08996 * 109.47611 * 59.99644 * 1 2 3 32 32 H 1.09001 * 109.46857 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46929 * 304.99568 * 4 2 1 34 34 H 1.08996 * 109.47645 * 64.99085 * 4 2 1 35 35 H 1.09004 * 109.46881 * 95.30869 * 6 5 4 36 36 H 1.09000 * 109.47087 * 215.30015 * 6 5 4 37 37 H 1.08995 * 109.47134 * 335.30818 * 6 5 4 38 38 H 0.96996 * 119.99822 * 179.97438 * 10 9 7 39 39 H 0.96999 * 120.00109 * 95.00283 * 15 2 1 40 40 H 1.07996 * 126.29193 * 0.02966 * 19 18 16 41 41 H 1.09000 * 110.84856 * 337.32159 * 26 24 23 42 42 H 1.08994 * 110.84482 * 100.94452 * 26 24 23 43 43 H 1.09001 * 111.06059 * 276.12576 * 27 26 24 44 44 H 1.09004 * 111.18549 * 152.01360 * 27 26 24 45 45 H 1.08992 * 110.31273 * 204.69325 * 28 27 26 46 46 H 1.09004 * 110.39101 * 82.56108 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8262 -1.1907 6 6 4.1258 -1.9918 -0.5614 7 6 4.2798 0.1650 -1.7241 8 1 3.8742 1.1567 -1.8604 9 6 5.5915 -0.1047 -2.0896 10 7 6.0051 -1.3505 -2.1852 11 14 6.7696 1.3005 -2.4458 12 1 6.9021 2.1537 -1.2376 13 1 8.0994 0.7507 -2.8123 14 1 6.2436 2.1142 -3.5713 15 7 2.0184 -0.6907 1.1961 16 6 2.1523 -0.0171 2.3557 17 8 1.8683 1.1641 2.4091 18 6 2.6444 -0.7119 3.5593 19 6 2.9986 -2.0431 3.6496 20 7 3.3931 -2.2691 4.9129 21 1 3.7007 -3.1180 5.2673 22 7 3.2803 -1.0748 5.6334 23 6 2.8357 -0.1417 4.8377 24 6 2.5717 1.2930 5.2159 25 1 1.9554 1.7689 4.4532 26 6 3.9087 2.0518 5.3574 27 6 3.6426 2.9581 6.5920 28 6 2.7222 2.0425 7.4377 29 8 1.9052 1.3468 6.4827 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7197 -1.2953 34 1 1.7515 -0.1582 -2.1370 35 1 4.3681 -2.7307 -1.3253 36 1 5.0386 -1.6833 -0.0519 37 1 3.4363 -2.4287 0.1609 38 1 6.9216 -1.5390 -2.4410 39 1 2.2491 -1.6318 1.1525 40 1 2.9668 -2.7688 2.8504 41 1 4.7283 1.3605 5.5534 42 1 4.1098 2.6520 4.4701 43 1 3.1267 3.8735 6.3020 44 1 4.5679 3.1828 7.1225 45 1 2.1000 2.6416 8.1025 46 1 3.3172 1.3338 8.0139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754322163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:11 Heat of formation + Delta-G solvation = 14.950501 kcal Electronic energy + Delta-G solvation = -28319.937130 eV Core-core repulsion = 24440.076501 eV Total energy + Delta-G solvation = -3879.860629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46436 -39.14873 -38.91230 -36.33578 -34.06473 -32.52955 -31.95728 -31.68250 -30.63890 -29.39932 -28.66786 -26.22030 -25.62429 -23.48386 -23.39655 -21.77344 -21.61596 -20.57325 -19.79503 -19.57768 -18.26760 -16.77257 -16.55182 -16.23486 -16.06735 -15.32451 -15.13924 -14.96447 -14.75870 -14.10205 -13.75044 -13.66869 -13.51700 -13.36424 -13.23491 -12.95325 -12.74400 -12.12300 -11.98415 -11.79475 -11.64365 -11.45645 -11.32518 -11.31181 -10.95628 -10.89753 -10.81793 -10.66624 -10.61747 -10.19797 -10.03706 -9.87368 -9.83775 -9.55758 -9.24506 -8.83172 -8.60097 -8.37990 -6.76343 -5.74253 -3.19310 1.56350 2.15722 2.65405 3.39663 3.44558 3.47493 3.70391 3.75128 4.01305 4.33610 4.50266 4.51709 4.69084 4.84780 4.90739 5.18609 5.26192 5.30619 5.41748 5.45690 5.47324 5.60591 5.66009 5.66990 5.69401 5.83036 5.87679 5.95243 5.97384 6.10385 6.18467 6.22130 6.36486 6.49277 6.53793 6.57293 6.82681 6.97164 7.05302 7.13905 7.27362 7.52115 7.63239 7.80038 8.07803 8.36962 8.76973 9.21636 9.84579 10.31855 11.30650 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.003855 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.490734 B = 7261.409838 C = 7823.463987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 H 0.086 0.914 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.169 3.831 7 C -0.252 4.252 8 H 0.068 0.932 9 C 0.003 3.997 10 N -0.910 5.910 11 Si 0.902 3.098 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.283 1.283 15 N -0.700 5.700 16 C 0.592 3.408 17 O -0.552 6.552 18 C -0.271 4.271 19 C 0.104 3.896 20 N -0.463 5.463 21 H 0.442 0.558 22 N -0.283 5.283 23 C 0.121 3.879 24 C 0.153 3.847 25 H 0.130 0.870 26 C -0.141 4.141 27 C -0.155 4.155 28 C 0.050 3.950 29 O -0.370 6.370 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.040 0.960 37 H -0.011 1.011 38 H 0.252 0.748 39 H 0.392 0.608 40 H 0.186 0.814 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.980 -1.063 14.990 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.011 3.989 3 H 0.104 0.896 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.025 3.975 7 C -0.381 4.381 8 H 0.086 0.914 9 C -0.195 4.195 10 N -0.555 5.555 11 Si 0.732 3.268 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.209 1.209 15 N -0.351 5.351 16 C 0.379 3.621 17 O -0.432 6.432 18 C -0.286 4.286 19 C -0.048 4.048 20 N -0.168 5.168 21 H 0.287 0.713 22 N -0.106 5.106 23 C -0.048 4.048 24 C 0.094 3.906 25 H 0.147 0.853 26 C -0.180 4.180 27 C -0.192 4.192 28 C -0.026 4.026 29 O -0.289 6.289 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.007 0.993 38 H 0.062 0.938 39 H 0.228 0.772 40 H 0.203 0.797 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.821 -0.669 16.160 17.554 hybrid contribution 1.153 -0.243 -0.966 1.524 sum -5.668 -0.912 15.194 16.242 Atomic orbital electron populations 1.22128 0.96540 1.01236 1.01831 1.21900 0.92105 0.98990 0.85922 0.89628 1.21062 0.85772 0.97514 0.94209 1.43792 0.99109 1.22730 1.66351 1.20797 0.93921 0.89144 0.93685 1.19136 0.93813 0.89884 1.35282 0.91439 1.24945 0.98675 0.96030 0.99841 1.70043 1.16716 1.16729 1.52037 0.86368 0.80368 0.81786 0.78254 1.21109 1.21721 1.20878 1.45842 1.66396 1.13555 1.09259 1.17156 0.76924 0.86027 0.81967 1.90661 1.52296 1.15363 1.84833 1.20358 1.18426 0.93576 0.96273 1.23165 0.95713 0.97263 0.88690 1.46127 1.51536 1.11521 1.07626 0.71307 1.77121 1.23839 0.90611 1.19034 1.22649 0.95488 0.96255 0.90437 1.21445 0.94830 0.86964 0.87393 0.85277 1.23142 0.96863 0.98564 0.99422 1.23301 1.00580 0.99056 0.96285 1.23371 0.93284 0.93890 0.92066 1.88483 1.42494 1.77896 1.19980 0.92761 0.91991 0.93156 0.94211 0.91872 0.95099 0.94105 0.99251 0.93803 0.77197 0.79699 0.90490 0.89002 0.90076 0.89912 0.89821 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.49 37.16 0.35 -1.91 16 2 C 0.12 2.05 2.88 -67.93 -0.20 1.85 16 3 H 0.09 1.75 7.57 -51.93 -0.39 1.36 16 4 C 0.14 2.69 5.29 -4.04 -0.02 2.67 16 5 N -0.60 -14.02 2.78 -181.12 -0.50 -14.53 16 6 C 0.17 3.78 8.52 59.85 0.51 4.29 16 7 C -0.25 -6.74 9.66 -15.06 -0.15 -6.89 16 8 H 0.07 1.80 7.87 -52.49 -0.41 1.39 16 9 C 0.00 0.08 5.08 -17.43 -0.09 -0.01 16 10 N -0.91 -25.83 10.70 55.49 0.59 -25.24 16 11 Si 0.90 21.90 29.58 -169.99 -5.03 16.88 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 N -0.70 -11.50 4.51 -54.88 -0.25 -11.75 16 16 C 0.59 10.48 7.78 -12.52 -0.10 10.38 16 17 O -0.55 -11.19 14.33 5.27 0.08 -11.11 16 18 C -0.27 -4.21 6.13 -105.07 -0.64 -4.85 16 19 C 0.10 1.22 11.52 -16.56 -0.19 1.03 16 20 N -0.46 -5.12 7.29 30.85 0.22 -4.89 16 21 H 0.44 3.12 8.96 -182.72 -1.64 1.48 16 22 N -0.28 -4.13 12.63 33.90 0.43 -3.71 16 23 C 0.12 1.90 6.02 -82.02 -0.49 1.41 16 24 C 0.15 2.32 3.80 -27.16 -0.10 2.22 16 25 H 0.13 2.17 5.92 -51.93 -0.31 1.87 16 26 C -0.14 -1.83 6.55 -24.71 -0.16 -1.99 16 27 C -0.15 -1.56 7.16 -24.40 -0.17 -1.73 16 28 C 0.05 0.56 7.78 38.19 0.30 0.85 16 29 O -0.37 -5.51 11.00 -35.23 -0.39 -5.90 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 35 H 0.03 0.76 7.35 -51.93 -0.38 0.38 16 36 H 0.04 1.01 7.31 -51.93 -0.38 0.63 16 37 H -0.01 -0.19 5.76 -51.93 -0.30 -0.49 16 38 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.39 5.73 5.13 -40.82 -0.21 5.52 16 40 H 0.19 1.53 7.46 -52.49 -0.39 1.14 16 41 H 0.08 1.02 7.84 -51.93 -0.41 0.61 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -33.84 372.52 -8.56 -42.40 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.17 Total: 4.91 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -1.16 Total: 7.33 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.50 Total: -60.11 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.31 Total: -17.01 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.84 -8.56 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754322163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.353 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds