Wall clock time and date at job start Tue Mar 31 2020 13:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46687 * 2 1 4 4 C 1.52995 * 109.47270 * 240.00028 * 2 1 3 5 5 N 1.46495 * 109.47274 * 184.99659 * 4 2 1 6 6 C 1.46501 * 120.00470 * 270.00189 * 5 4 2 7 7 C 1.36939 * 119.99407 * 90.00180 * 5 4 2 8 8 H 1.07997 * 120.00380 * 22.34203 * 7 5 4 9 9 C 1.38818 * 119.99749 * 202.33142 * 7 5 4 10 10 N 1.31618 * 119.99946 * 11.37549 * 9 7 5 11 11 Si 1.86799 * 120.00172 * 191.36951 * 9 7 5 12 12 H 1.48504 * 109.47079 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47133 * 120.00149 * 11 9 7 14 14 H 1.48491 * 109.47290 * 240.00665 * 11 9 7 15 15 N 1.46499 * 109.46727 * 120.00167 * 2 1 3 16 16 C 1.34775 * 119.99891 * 274.99788 * 15 2 1 17 17 O 1.21603 * 120.00551 * 0.02562 * 16 15 2 18 18 C 1.47435 * 119.99772 * 180.02562 * 16 15 2 19 19 C 1.38041 * 126.41680 * 0.19326 * 18 16 15 20 20 N 1.34256 * 107.41668 * 180.26136 * 19 18 16 21 21 H 0.96996 * 125.75598 * 179.72903 * 20 19 18 22 22 N 1.39937 * 108.49151 * 359.73018 * 20 19 18 23 23 C 1.30439 * 108.89878 * 0.02562 * 22 20 19 24 24 C 1.50696 * 125.99263 * 180.02562 * 23 22 20 25 25 H 1.08998 * 109.87789 * 164.32338 * 24 23 22 26 26 C 1.54110 * 109.87815 * 285.33264 * 24 23 22 27 27 C 1.54809 * 104.18795 * 121.59982 * 26 24 23 28 28 C 1.54994 * 102.09242 * 20.88381 * 27 26 24 29 29 O 1.43743 * 110.00478 * 43.23234 * 24 23 22 30 30 H 1.09005 * 109.47271 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47143 * 299.99859 * 1 2 3 32 32 H 1.08996 * 109.47160 * 59.99880 * 1 2 3 33 33 H 1.09004 * 109.47176 * 305.00541 * 4 2 1 34 34 H 1.09009 * 109.47227 * 65.00010 * 4 2 1 35 35 H 1.08997 * 109.47000 * 94.22407 * 6 5 4 36 36 H 1.09000 * 109.47264 * 214.22205 * 6 5 4 37 37 H 1.08996 * 109.46650 * 334.22877 * 6 5 4 38 38 H 0.96996 * 120.00119 * 179.97438 * 10 9 7 39 39 H 0.96995 * 120.00018 * 95.00743 * 15 2 1 40 40 H 1.07996 * 126.29198 * 359.96530 * 19 18 16 41 41 H 1.08999 * 110.48354 * 240.27890 * 26 24 23 42 42 H 1.08996 * 110.48234 * 2.78825 * 26 24 23 43 43 H 1.08999 * 110.90797 * 139.07893 * 27 26 24 44 44 H 1.09001 * 110.90867 * 262.68007 * 27 26 24 45 45 H 1.08996 * 110.62269 * 81.47462 * 28 27 26 46 46 H 1.09001 * 110.61532 * 204.47618 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.3344 0.2342 -1.7612 7 6 4.0849 -1.9158 -0.6023 8 1 3.5339 -2.8399 -0.5087 9 6 5.3864 -1.8326 -0.1264 10 7 5.9795 -0.6613 -0.0337 11 14 6.2957 -3.3828 0.3825 12 1 5.4148 -4.5616 0.1829 13 1 7.5189 -3.5337 -0.4458 14 1 6.6764 -3.2859 1.8145 15 7 2.0183 -0.6907 1.1962 16 6 2.1470 -0.0183 2.3571 17 8 1.8574 1.1615 2.4119 18 6 2.6389 -0.7133 3.5608 19 6 3.0073 -2.0408 3.6476 20 7 3.3879 -2.2702 4.9144 21 1 3.6953 -3.1191 5.2690 22 7 3.2665 -1.0781 5.6371 23 6 2.8245 -0.1443 4.8407 24 6 2.5546 1.2888 5.2204 25 1 2.4638 1.8994 4.3220 26 6 1.2568 1.3764 6.0468 27 6 1.7006 2.0194 7.3833 28 6 3.0296 2.7107 6.9854 29 8 3.6207 1.7882 6.0451 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6054 -1.7198 -1.2952 34 1 1.7517 -0.1582 -2.1370 35 1 4.6023 0.9456 -0.9802 36 1 5.2405 -0.2027 -2.1811 37 1 3.7811 0.7485 -2.5469 38 1 6.8887 -0.6030 0.2991 39 1 2.2490 -1.6317 1.1526 40 1 2.9878 -2.7633 2.8451 41 1 0.5259 2.0091 5.5432 42 1 0.8455 0.3816 6.2176 43 1 0.9686 2.7512 7.7249 44 1 1.8709 1.2574 8.1439 45 1 2.8350 3.6718 6.5096 46 1 3.6729 2.8357 7.8565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754322164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:14 Heat of formation + Delta-G solvation = 13.658046 kcal Electronic energy + Delta-G solvation = -28775.336942 eV Core-core repulsion = 24895.420268 eV Total energy + Delta-G solvation = -3879.916674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.21034 -38.99115 -38.63777 -36.19041 -33.93057 -32.38521 -31.78024 -31.58006 -30.52617 -29.11945 -28.43184 -26.15182 -25.60181 -23.41571 -23.13502 -21.63665 -21.56285 -20.40476 -19.50731 -19.41329 -18.04929 -16.75525 -16.21845 -15.90852 -15.86929 -15.28812 -14.92146 -14.88151 -14.66379 -13.95312 -13.64354 -13.60938 -13.51929 -13.17263 -12.94062 -12.87030 -12.57521 -12.18222 -11.84824 -11.67370 -11.51231 -11.38276 -11.29337 -11.19897 -10.91376 -10.75096 -10.72021 -10.67149 -10.37653 -10.22641 -10.05512 -9.85122 -9.72256 -9.35222 -9.01543 -8.60025 -8.55335 -8.11290 -6.78047 -5.75484 -3.21476 1.84705 2.38140 2.89605 3.26119 3.33530 3.38249 3.86880 4.11234 4.22675 4.41543 4.53094 4.72671 4.91745 4.95415 5.10350 5.30877 5.34611 5.37924 5.50759 5.63254 5.68126 5.73286 5.74236 5.78162 5.79784 5.95311 5.99478 6.03280 6.06923 6.19694 6.25346 6.30505 6.47980 6.56043 6.62153 6.77577 6.93946 7.02634 7.28643 7.38044 7.40285 7.68302 7.76308 7.81429 8.34841 8.42190 9.07000 9.18770 9.83404 10.34046 11.28691 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.004741 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.969093 B = 5905.116930 C = 6956.484534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 H 0.077 0.923 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.258 4.258 8 H 0.066 0.934 9 C 0.009 3.991 10 N -0.894 5.894 11 Si 0.891 3.109 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.292 1.292 15 N -0.684 5.684 16 C 0.597 3.403 17 O -0.564 6.564 18 C -0.266 4.266 19 C 0.110 3.890 20 N -0.466 5.466 21 H 0.441 0.559 22 N -0.282 5.282 23 C 0.129 3.871 24 C 0.151 3.849 25 H 0.118 0.882 26 C -0.140 4.140 27 C -0.152 4.152 28 C 0.046 3.954 29 O -0.365 6.365 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.028 0.972 36 H 0.043 0.957 37 H -0.004 1.004 38 H 0.252 0.748 39 H 0.400 0.600 40 H 0.187 0.813 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.575 -0.225 9.228 14.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.388 4.388 8 H 0.083 0.917 9 C -0.190 4.190 10 N -0.538 5.538 11 Si 0.721 3.279 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.219 1.219 15 N -0.333 5.333 16 C 0.384 3.616 17 O -0.445 6.445 18 C -0.280 4.280 19 C -0.042 4.042 20 N -0.171 5.171 21 H 0.285 0.715 22 N -0.104 5.104 23 C -0.040 4.040 24 C 0.091 3.909 25 H 0.136 0.864 26 C -0.178 4.178 27 C -0.190 4.190 28 C -0.031 4.031 29 O -0.283 6.283 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.014 0.986 38 H 0.063 0.937 39 H 0.235 0.765 40 H 0.204 0.796 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.980 0.314 10.411 14.425 hybrid contribution 0.710 -1.671 -0.339 1.847 sum -9.270 -1.357 10.072 13.755 Atomic orbital electron populations 1.22160 0.96996 1.01130 1.01520 1.21797 0.91672 0.98473 0.86868 0.90440 1.21186 0.85942 0.97816 0.93690 1.43873 0.98902 1.22621 1.66627 1.20793 0.92915 0.90489 0.93872 1.19067 0.97132 0.89384 1.33189 0.91662 1.24985 0.98654 0.95894 0.99491 1.70059 1.13300 1.21422 1.49003 0.86415 0.80439 0.83052 0.78009 1.20311 1.21558 1.21879 1.45508 1.65370 1.13995 1.08382 1.17075 0.76687 0.85797 0.82090 1.90620 1.52997 1.15540 1.85323 1.20293 1.18272 0.93737 0.95741 1.23193 0.94984 0.97604 0.88422 1.46101 1.52014 1.11481 1.07522 0.71480 1.77106 1.23517 0.90531 1.19288 1.22118 0.96272 0.95122 0.90511 1.21370 0.86091 0.87734 0.95663 0.86424 1.22906 0.97459 1.02237 0.95208 1.23124 0.97774 1.00305 0.97820 1.23534 0.93908 0.92949 0.92680 1.88968 1.30562 1.60432 1.48386 0.93157 0.92871 0.92378 0.93456 0.93020 0.95329 0.93781 0.98579 0.93748 0.76515 0.79609 0.89921 0.90652 0.90303 0.90583 0.92015 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.48 37.16 0.35 -1.99 16 2 C 0.12 2.19 2.88 -67.93 -0.20 2.00 16 3 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 4 C 0.14 2.65 5.36 -4.05 -0.02 2.63 16 5 N -0.60 -13.90 2.82 -181.12 -0.51 -14.41 16 6 C 0.16 3.97 9.01 59.85 0.54 4.51 16 7 C -0.26 -6.33 8.02 -15.06 -0.12 -6.45 16 8 H 0.07 1.52 7.84 -52.49 -0.41 1.11 16 9 C 0.01 0.24 5.13 -17.43 -0.09 0.15 16 10 N -0.89 -25.27 10.59 55.49 0.59 -24.69 16 11 Si 0.89 20.33 29.57 -169.99 -5.03 15.30 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 N -0.68 -12.91 4.48 -54.88 -0.25 -13.16 16 16 C 0.60 12.10 7.78 -12.52 -0.10 12.00 16 17 O -0.56 -12.58 14.34 5.28 0.08 -12.51 16 18 C -0.27 -4.93 6.13 -105.06 -0.64 -5.57 16 19 C 0.11 1.69 11.52 -16.56 -0.19 1.50 16 20 N -0.47 -6.65 7.29 30.85 0.22 -6.42 16 21 H 0.44 4.51 8.96 -182.72 -1.64 2.87 16 22 N -0.28 -4.88 12.63 33.89 0.43 -4.46 16 23 C 0.13 2.37 5.95 -82.02 -0.49 1.88 16 24 C 0.15 2.59 3.69 -27.30 -0.10 2.49 16 25 H 0.12 2.26 5.93 -51.93 -0.31 1.95 16 26 C -0.14 -1.85 6.63 -25.20 -0.17 -2.02 16 27 C -0.15 -1.66 7.15 -24.73 -0.18 -1.84 16 28 C 0.05 0.57 7.72 38.21 0.29 0.86 16 29 O -0.37 -6.38 11.17 -35.23 -0.39 -6.77 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.83 8.03 -51.93 -0.42 0.41 16 34 H 0.05 0.89 7.86 -51.92 -0.41 0.48 16 35 H 0.03 0.77 7.42 -51.93 -0.39 0.39 16 36 H 0.04 1.14 7.19 -51.93 -0.37 0.77 16 37 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 38 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.40 7.21 6.32 -40.82 -0.26 6.95 16 40 H 0.19 2.36 7.46 -52.49 -0.39 1.97 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 1.01 7.69 -51.93 -0.40 0.61 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -33.13 374.24 -8.63 -41.76 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.31 Total: 9.57 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -1.11 Total: 10.15 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: 0.48 Total: -63.13 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.32 Total: -19.28 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.13 -8.63 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754322164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.422 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds