Wall clock time and date at job start Tue Mar 31 2020 13:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46687 * 2 1 4 4 C 1.52995 * 109.47270 * 240.00028 * 2 1 3 5 5 N 1.46495 * 109.47274 * 184.99659 * 4 2 1 6 6 C 1.46501 * 120.00470 * 270.00189 * 5 4 2 7 7 C 1.36939 * 119.99407 * 90.00180 * 5 4 2 8 8 H 1.07997 * 120.00380 * 22.34203 * 7 5 4 9 9 C 1.38818 * 119.99749 * 202.33142 * 7 5 4 10 10 N 1.31618 * 119.99946 * 11.37549 * 9 7 5 11 11 Si 1.86799 * 120.00172 * 191.36951 * 9 7 5 12 12 H 1.48504 * 109.47079 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47133 * 120.00149 * 11 9 7 14 14 H 1.48491 * 109.47290 * 240.00665 * 11 9 7 15 15 N 1.46499 * 109.46727 * 120.00167 * 2 1 3 16 16 C 1.34775 * 119.99891 * 274.99788 * 15 2 1 17 17 O 1.21603 * 120.00551 * 0.02562 * 16 15 2 18 18 C 1.47435 * 119.99772 * 180.02562 * 16 15 2 19 19 C 1.38041 * 126.41680 * 0.19326 * 18 16 15 20 20 N 1.34256 * 107.41668 * 180.26136 * 19 18 16 21 21 H 0.96996 * 125.75598 * 179.72903 * 20 19 18 22 22 N 1.39937 * 108.49151 * 359.73018 * 20 19 18 23 23 C 1.30439 * 108.89878 * 0.02562 * 22 20 19 24 24 C 1.50696 * 125.99263 * 180.02562 * 23 22 20 25 25 H 1.08998 * 109.87789 * 164.32338 * 24 23 22 26 26 C 1.54110 * 109.87815 * 285.33264 * 24 23 22 27 27 C 1.54809 * 104.18795 * 121.59982 * 26 24 23 28 28 C 1.54994 * 102.09242 * 20.88381 * 27 26 24 29 29 O 1.43743 * 110.00478 * 43.23234 * 24 23 22 30 30 H 1.09005 * 109.47271 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47143 * 299.99859 * 1 2 3 32 32 H 1.08996 * 109.47160 * 59.99880 * 1 2 3 33 33 H 1.09004 * 109.47176 * 305.00541 * 4 2 1 34 34 H 1.09009 * 109.47227 * 65.00010 * 4 2 1 35 35 H 1.08997 * 109.47000 * 94.22407 * 6 5 4 36 36 H 1.09000 * 109.47264 * 214.22205 * 6 5 4 37 37 H 1.08996 * 109.46650 * 334.22877 * 6 5 4 38 38 H 0.96996 * 120.00119 * 179.97438 * 10 9 7 39 39 H 0.96995 * 120.00018 * 95.00743 * 15 2 1 40 40 H 1.07996 * 126.29198 * 359.96530 * 19 18 16 41 41 H 1.08999 * 110.48354 * 240.27890 * 26 24 23 42 42 H 1.08996 * 110.48234 * 2.78825 * 26 24 23 43 43 H 1.08999 * 110.90797 * 139.07893 * 27 26 24 44 44 H 1.09001 * 110.90867 * 262.68007 * 27 26 24 45 45 H 1.08996 * 110.62269 * 81.47462 * 28 27 26 46 46 H 1.09001 * 110.61532 * 204.47618 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.3344 0.2342 -1.7612 7 6 4.0849 -1.9158 -0.6023 8 1 3.5339 -2.8399 -0.5087 9 6 5.3864 -1.8326 -0.1264 10 7 5.9795 -0.6613 -0.0337 11 14 6.2957 -3.3828 0.3825 12 1 5.4148 -4.5616 0.1829 13 1 7.5189 -3.5337 -0.4458 14 1 6.6764 -3.2859 1.8145 15 7 2.0183 -0.6907 1.1962 16 6 2.1470 -0.0183 2.3571 17 8 1.8574 1.1615 2.4119 18 6 2.6389 -0.7133 3.5608 19 6 3.0073 -2.0408 3.6476 20 7 3.3879 -2.2702 4.9144 21 1 3.6953 -3.1191 5.2690 22 7 3.2665 -1.0781 5.6371 23 6 2.8245 -0.1443 4.8407 24 6 2.5546 1.2888 5.2204 25 1 2.4638 1.8994 4.3220 26 6 1.2568 1.3764 6.0468 27 6 1.7006 2.0194 7.3833 28 6 3.0296 2.7107 6.9854 29 8 3.6207 1.7882 6.0451 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6054 -1.7198 -1.2952 34 1 1.7517 -0.1582 -2.1370 35 1 4.6023 0.9456 -0.9802 36 1 5.2405 -0.2027 -2.1811 37 1 3.7811 0.7485 -2.5469 38 1 6.8887 -0.6030 0.2991 39 1 2.2490 -1.6317 1.1526 40 1 2.9878 -2.7633 2.8451 41 1 0.5259 2.0091 5.5432 42 1 0.8455 0.3816 6.2176 43 1 0.9686 2.7512 7.7249 44 1 1.8709 1.2574 8.1439 45 1 2.8350 3.6718 6.5096 46 1 3.6729 2.8357 7.8565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754322164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:13 Heat of formation + Delta-G solvation = -10.163461 kcal Electronic energy + Delta-G solvation = -28776.369920 eV Core-core repulsion = 24895.420268 eV Total energy + Delta-G solvation = -3880.949652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.50456 -40.19366 -40.11616 -37.88689 -35.62578 -33.63617 -33.26010 -32.86613 -32.15604 -30.48244 -29.58448 -27.99431 -27.30265 -24.57831 -24.55358 -23.31309 -22.57755 -21.87325 -20.96292 -20.77310 -19.39084 -18.60158 -17.42854 -17.28133 -17.01798 -16.89557 -16.56667 -16.13599 -16.05064 -15.58109 -15.20459 -15.08601 -14.68681 -14.55048 -14.53174 -14.29544 -13.86357 -13.74578 -13.27767 -13.05516 -12.82869 -12.72069 -12.69477 -12.64645 -12.48376 -12.20531 -12.09774 -12.02180 -11.88683 -11.87065 -11.67600 -11.60413 -10.97197 -10.70092 -10.57370 -10.41982 -9.98227 -9.56664 -8.71089 -7.72459 -5.19497 0.56308 1.00147 1.44889 1.51336 1.59348 1.75102 2.41934 2.55868 2.71129 3.00477 3.35630 3.44598 3.60794 3.76220 3.80079 3.98775 3.99872 4.16704 4.23393 4.39003 4.41253 4.44533 4.54625 4.63650 4.66888 4.79481 4.83103 4.86767 4.89996 4.91493 4.99357 5.04081 5.08661 5.16717 5.23934 5.30833 5.37831 5.49367 5.71237 5.78898 5.89272 5.89932 6.22110 6.39293 6.47893 6.92257 7.21629 7.55997 7.95438 8.42712 9.31710 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.004741 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.969093 B = 5905.116930 C = 6956.484534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.122 3.878 3 H 0.038 0.962 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.179 3.821 7 C -0.242 4.242 8 H 0.088 0.912 9 C -0.048 4.048 10 N -0.937 5.937 11 Si 0.949 3.051 12 H -0.247 1.247 13 H -0.308 1.308 14 H -0.301 1.301 15 N -0.681 5.681 16 C 0.589 3.411 17 O -0.596 6.596 18 C -0.304 4.304 19 C 0.129 3.871 20 N -0.447 5.447 21 H 0.460 0.540 22 N -0.296 5.296 23 C 0.114 3.886 24 C 0.146 3.854 25 H 0.086 0.914 26 C -0.133 4.133 27 C -0.140 4.140 28 C 0.035 3.965 29 O -0.398 6.398 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.072 0.928 35 H -0.011 1.011 36 H 0.018 0.982 37 H 0.026 0.974 38 H 0.238 0.762 39 H 0.404 0.596 40 H 0.218 0.782 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.605 -2.399 9.597 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.056 0.944 4 C 0.015 3.985 5 N -0.334 5.334 6 C 0.034 3.966 7 C -0.372 4.372 8 H 0.106 0.894 9 C -0.243 4.243 10 N -0.585 5.585 11 Si 0.779 3.221 12 H -0.170 1.170 13 H -0.236 1.236 14 H -0.229 1.229 15 N -0.329 5.329 16 C 0.377 3.623 17 O -0.479 6.479 18 C -0.319 4.319 19 C -0.024 4.024 20 N -0.154 5.154 21 H 0.308 0.692 22 N -0.120 5.120 23 C -0.054 4.054 24 C 0.086 3.914 25 H 0.104 0.896 26 C -0.172 4.172 27 C -0.177 4.177 28 C -0.040 4.040 29 O -0.318 6.318 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.007 0.993 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.047 0.953 39 H 0.241 0.759 40 H 0.234 0.766 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.129 0.871 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.060 -1.917 10.789 16.295 hybrid contribution 1.313 -0.978 -0.510 1.715 sum -10.747 -2.895 10.279 15.150 Atomic orbital electron populations 1.22020 0.93724 1.02705 1.01949 1.21705 0.94114 0.96168 0.86531 0.94399 1.21398 0.83122 0.99549 0.94418 1.44133 1.00891 1.21990 1.66360 1.20470 0.92762 0.90077 0.93302 1.19529 0.96814 0.90320 1.30532 0.89443 1.25666 0.99913 0.97960 1.00739 1.70286 1.12829 1.23756 1.51585 0.85464 0.78924 0.81230 0.76485 1.17039 1.23606 1.22854 1.45499 1.65155 1.14082 1.08181 1.17396 0.76365 0.85588 0.82926 1.90595 1.54466 1.16940 1.85925 1.20361 1.20784 0.95342 0.95405 1.23555 0.92807 0.96880 0.89200 1.46125 1.50656 1.11603 1.07042 0.69184 1.77036 1.23893 0.91275 1.19756 1.22354 0.96462 0.95861 0.90767 1.21278 0.87915 0.86917 0.95258 0.89607 1.22868 0.95701 1.02585 0.96016 1.23104 0.97481 1.00739 0.96383 1.23855 0.95048 0.92621 0.92521 1.88919 1.31898 1.61569 1.49384 0.90900 0.94204 0.90238 0.90949 0.91015 0.99296 0.96356 0.95518 0.95250 0.75943 0.76575 0.89174 0.90853 0.87147 0.90259 0.91154 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.48 71.98 0.68 -3.25 16 2 C 0.12 4.35 2.88 44.99 0.13 4.48 16 3 H 0.04 1.65 7.58 -2.39 -0.02 1.63 16 4 C 0.14 4.92 5.36 86.38 0.46 5.39 16 5 N -0.61 -27.71 2.82 -726.94 -2.05 -29.76 16 6 C 0.18 8.79 9.01 127.77 1.15 9.94 16 7 C -0.24 -11.43 8.02 84.03 0.67 -10.76 16 8 H 0.09 3.73 7.84 -2.91 -0.02 3.70 16 9 C -0.05 -2.47 5.13 84.86 0.44 -2.03 16 10 N -0.94 -54.71 10.59 21.65 0.23 -54.48 16 11 Si 0.95 41.30 29.57 68.60 2.03 43.33 16 12 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 13 H -0.31 -14.28 7.11 99.48 0.71 -13.58 16 14 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 15 N -0.68 -25.23 4.48 -445.80 -2.00 -27.23 16 16 C 0.59 24.39 7.78 86.67 0.67 25.07 16 17 O -0.60 -27.93 14.34 -4.04 -0.06 -27.99 16 18 C -0.30 -11.36 6.13 -20.15 -0.12 -11.48 16 19 C 0.13 3.77 11.52 84.28 0.97 4.74 16 20 N -0.45 -11.99 7.29 -56.32 -0.41 -12.40 16 21 H 0.46 8.25 8.96 -213.43 -1.91 6.34 16 22 N -0.30 -10.15 12.63 -46.68 -0.59 -10.74 16 23 C 0.11 4.27 5.95 43.52 0.26 4.52 16 24 C 0.15 5.20 3.69 30.22 0.11 5.32 16 25 H 0.09 3.56 5.93 -2.39 -0.01 3.54 16 26 C -0.13 -3.52 6.63 31.59 0.21 -3.31 16 27 C -0.14 -2.83 7.15 31.89 0.23 -2.60 16 28 C 0.04 0.85 7.72 72.66 0.56 1.41 16 29 O -0.40 -14.32 11.17 -148.98 -1.66 -15.99 16 30 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 2.21 8.03 -2.38 -0.02 2.19 16 34 H 0.07 2.23 7.86 -2.38 -0.02 2.21 16 35 H -0.01 -0.64 7.42 -2.39 -0.02 -0.66 16 36 H 0.02 0.95 7.19 -2.39 -0.02 0.94 16 37 H 0.03 1.11 7.84 -2.39 -0.02 1.09 16 38 H 0.24 13.99 8.31 -92.71 -0.77 13.22 16 39 H 0.40 13.79 6.32 -92.71 -0.59 13.20 16 40 H 0.22 4.80 7.46 -2.91 -0.02 4.77 16 41 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.07 1.94 7.69 -2.39 -0.02 1.92 16 43 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -75.58 374.24 0.43 -75.16 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -1.49 Total: 32.65 kcal Atomic # 6 Polarization: 21.02 SS G_CDS: 6.43 Total: 27.44 kcal Atomic # 7 Polarization: -129.79 SS G_CDS: -4.82 Total: -134.60 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -1.72 Total: -43.98 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -75.58 0.43 -75.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754322164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.995 kcal (2) G-P(sol) polarization free energy of solvation -75.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds