Wall clock time and date at job start Tue Mar 31 2020 13:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 120.00009 * 2 1 4 4 C 1.50699 * 109.47291 * 269.99749 * 3 2 1 5 5 H 1.08002 * 119.99550 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00250 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99682 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00003 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47039 * 90.00406 * 8 6 4 10 10 H 1.48505 * 109.46972 * 209.99792 * 8 6 4 11 11 H 1.48493 * 109.47400 * 330.00161 * 8 6 4 12 12 C 1.34776 * 120.00388 * 179.97438 * 2 1 3 13 13 O 1.21590 * 120.00194 * 180.02562 * 12 2 1 14 14 N 1.34778 * 119.99879 * 0.02562 * 12 2 1 15 15 C 1.39498 * 120.00415 * 180.02562 * 14 12 2 16 16 C 1.36105 * 126.21195 * 0.28794 * 15 14 12 17 17 C 1.39763 * 107.82577 * 180.14587 * 16 15 14 18 18 C 1.50699 * 125.84114 * 179.86589 * 17 16 15 19 19 C 1.53175 * 109.54351 * 34.27633 * 18 17 16 20 20 C 1.53094 * 109.16661 * 183.15290 * 19 18 17 21 21 O 1.42898 * 109.41211 * 57.60371 * 20 19 18 22 22 C 1.42897 * 114.10001 * 298.84343 * 21 20 19 23 23 C 1.53089 * 109.41656 * 61.16248 * 22 21 20 24 24 N 1.30850 * 108.32065 * 359.60645 * 17 16 15 25 25 N 1.35244 * 126.21691 * 180.02562 * 15 14 12 26 26 C 1.46497 * 126.04632 * 0.03051 * 25 15 14 27 27 H 1.08993 * 109.47397 * 270.00340 * 1 2 3 28 28 H 1.09004 * 109.47132 * 30.00219 * 1 2 3 29 29 H 1.09000 * 109.46866 * 149.99903 * 1 2 3 30 30 H 1.09006 * 109.46966 * 29.99719 * 3 2 1 31 31 H 1.09002 * 109.47107 * 149.99490 * 3 2 1 32 32 H 0.97006 * 119.99964 * 179.97438 * 7 6 4 33 33 H 0.97003 * 119.99626 * 359.97438 * 14 12 2 34 34 H 1.07999 * 126.08872 * 359.97438 * 16 15 14 35 35 H 1.09004 * 109.61503 * 154.49190 * 18 17 16 36 36 H 1.09004 * 109.52259 * 303.05556 * 19 18 17 37 37 H 1.09006 * 109.52330 * 63.24389 * 19 18 17 38 38 H 1.09006 * 109.47665 * 297.62062 * 20 19 18 39 39 H 1.08993 * 109.47955 * 177.58818 * 20 19 18 40 40 H 1.09002 * 109.48425 * 301.17758 * 22 21 20 41 41 H 1.09002 * 109.48369 * 181.14801 * 22 21 20 42 42 H 1.08997 * 109.52675 * 182.48845 * 23 22 21 43 43 H 1.08995 * 109.52428 * 62.29514 * 23 22 21 44 44 H 1.08994 * 109.47719 * 269.98529 * 26 25 15 45 45 H 1.09003 * 109.47119 * 29.99213 * 26 25 15 46 46 H 1.09000 * 109.47393 * 149.98217 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8780 -1.6728 7 7 3.5533 3.6181 -0.6731 8 14 3.4380 3.4168 -3.4339 9 1 2.3079 4.2591 -3.9014 10 1 4.6980 4.2004 -3.4960 11 1 3.5562 2.2196 -4.3043 12 6 2.1389 -1.1671 0.0005 13 8 3.3548 -1.1671 0.0010 14 7 1.4651 -2.3344 0.0005 15 6 2.1625 -3.5425 0.0016 16 6 3.5156 -3.6898 0.0082 17 6 3.7969 -5.0588 0.0035 18 6 5.1712 -5.6773 0.0052 19 6 6.1254 -4.8031 0.8247 20 6 7.5350 -5.3964 0.7557 21 8 7.9460 -5.4866 -0.6100 22 6 7.1180 -6.3292 -1.4140 23 6 5.6917 -5.7734 -1.4322 24 7 2.6630 -5.7118 0.0029 25 7 1.6171 -4.7801 0.0012 26 6 0.1855 -5.0912 -0.0010 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6083 2.0284 0.5138 31 1 3.1498 1.1384 0.5139 32 1 4.0301 4.4440 -0.8503 33 1 0.4950 -2.3344 0.0005 34 1 4.2424 -2.8911 0.0132 35 1 5.1232 -6.6743 0.4431 36 1 6.1352 -3.7926 0.4163 37 1 5.7927 -4.7744 1.8624 38 1 7.5328 -6.3913 1.2012 39 1 8.2265 -4.7549 1.3018 40 1 7.1104 -7.3363 -0.9970 41 1 7.5092 -6.3598 -2.4310 42 1 5.0488 -6.4385 -2.0086 43 1 5.6927 -4.7825 -1.8862 44 1 -0.1712 -5.1682 1.0260 45 1 -0.3577 -4.2988 -0.5159 46 1 0.0203 -6.0381 -0.5149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599894272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:47 Heat of formation + Delta-G solvation = 13.851035 kcal Electronic energy + Delta-G solvation = -27774.796122 eV Core-core repulsion = 23894.887816 eV Total energy + Delta-G solvation = -3879.908306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.40846 -39.57061 -39.05494 -35.31321 -35.03115 -34.06445 -32.56190 -32.23933 -31.13685 -28.98466 -27.70067 -27.04564 -25.90325 -24.66421 -23.56994 -23.25105 -21.41691 -20.37631 -19.98074 -18.89365 -17.88197 -16.76525 -16.60791 -16.06637 -16.02858 -15.71172 -15.54499 -14.88580 -14.77740 -14.69754 -14.28482 -13.98610 -13.82221 -13.24575 -13.15517 -13.10271 -12.95317 -12.59403 -12.37586 -12.29039 -12.22123 -12.02798 -11.37856 -11.29034 -11.24703 -11.01636 -10.93546 -10.62491 -10.53172 -10.40668 -10.28612 -10.12596 -9.69440 -9.60174 -9.29297 -8.67586 -8.46784 -7.99941 -7.59642 -6.07869 -4.12882 2.01187 2.22496 3.01448 3.14048 3.28644 3.36258 3.41149 3.82949 3.85310 4.25785 4.36933 4.44725 4.73991 4.77168 4.82602 4.98930 5.00527 5.18258 5.21592 5.25526 5.26852 5.33149 5.36930 5.53046 5.57448 5.63781 5.67751 5.72924 5.79726 5.91104 6.00264 6.03621 6.17464 6.22951 6.33732 6.41167 6.70177 7.01562 7.16122 7.20378 7.31108 7.43035 7.52491 7.87962 7.94014 8.17230 8.42455 8.86776 9.09039 9.52603 11.00077 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010903 B = 0.003661 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.443258 B = 7646.074047 C = 9392.183784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.608 5.608 3 C 0.260 3.740 4 C -0.530 4.530 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.705 3.295 13 O -0.550 6.550 14 N -0.670 5.670 15 C 0.337 3.663 16 C -0.276 4.276 17 C 0.094 3.906 18 C -0.001 4.001 19 C -0.149 4.149 20 C 0.063 3.937 21 O -0.383 6.383 22 C 0.064 3.936 23 C -0.146 4.146 24 N -0.304 5.304 25 N -0.399 5.399 26 C 0.104 3.896 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.048 0.952 32 H 0.264 0.736 33 H 0.399 0.601 34 H 0.177 0.823 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.951 -19.139 2.976 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.142 3.858 4 C -0.569 4.569 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.405 3.595 13 O -0.424 6.424 14 N -0.323 5.323 15 C 0.117 3.883 16 C -0.308 4.308 17 C -0.072 4.072 18 C -0.022 4.022 19 C -0.187 4.187 20 C -0.014 4.014 21 O -0.301 6.301 22 C -0.013 4.013 23 C -0.185 4.185 24 N -0.126 5.126 25 N -0.187 5.187 26 C -0.038 4.038 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.236 0.764 34 H 0.194 0.806 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.114 0.886 40 H 0.067 0.933 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.540 -19.866 2.957 20.395 hybrid contribution -0.806 1.093 -0.905 1.632 sum -4.346 -18.774 2.052 19.379 Atomic orbital electron populations 1.21625 0.81617 1.02461 1.00521 1.47495 1.05754 1.06003 1.75109 1.19310 0.92434 0.76436 0.97666 1.21429 1.36835 1.06341 0.92258 0.92464 1.24910 0.95218 0.96326 0.97467 1.69924 1.38234 1.14330 1.30748 0.86493 0.77718 0.78600 0.84601 1.20678 1.20989 1.19888 1.15642 0.85468 0.79450 0.78907 1.90845 1.11069 1.84716 1.55746 1.42355 1.09481 1.02648 1.77806 1.17730 0.91085 0.79409 1.00115 1.21545 0.93293 0.96724 1.19213 1.21961 0.93816 0.92776 0.98630 1.19469 0.87678 0.98597 0.96448 1.22253 0.94438 1.01071 1.00981 1.22596 0.95575 1.00063 0.83143 1.87945 1.52582 1.68869 1.20730 1.22566 0.90106 0.92801 0.95849 1.22221 0.96645 1.03431 0.96186 1.77294 0.93649 1.12653 1.29039 1.48304 1.06266 1.01877 1.62278 1.21715 0.75871 1.03286 1.02945 0.93445 0.89935 0.93439 0.94570 0.93439 0.92625 0.76421 0.80593 0.90061 0.89519 0.90527 0.93384 0.88606 0.93315 0.88817 0.90791 0.90115 0.91086 0.90435 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 10.20 59.84 0.61 1.79 16 2 N -0.61 -12.39 2.86 -188.74 -0.54 -12.93 16 3 C 0.26 6.59 5.16 -5.19 -0.03 6.56 16 4 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.70 14.63 8.24 -86.92 -0.72 13.91 16 13 O -0.55 -13.60 13.05 5.29 0.07 -13.53 16 14 N -0.67 -10.80 5.28 -15.85 -0.08 -10.88 16 15 C 0.34 5.66 7.66 -153.15 -1.17 4.48 16 16 C -0.28 -4.99 8.80 -39.78 -0.35 -5.34 16 17 C 0.09 1.47 6.14 -82.44 -0.51 0.97 16 18 C 0.00 -0.02 2.74 -91.59 -0.25 -0.27 16 19 C -0.15 -1.82 5.06 -26.59 -0.13 -1.96 16 20 C 0.06 0.67 6.84 37.21 0.25 0.93 16 21 O -0.38 -4.80 10.76 -35.23 -0.38 -5.18 16 22 C 0.06 0.66 6.84 37.20 0.25 0.91 16 23 C -0.15 -1.73 5.40 -26.59 -0.14 -1.87 16 24 N -0.30 -4.75 12.56 33.65 0.42 -4.32 16 25 N -0.40 -5.71 4.02 -67.18 -0.27 -5.98 16 26 C 0.10 0.93 11.28 59.85 0.68 1.60 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 29 H 0.05 0.53 6.36 -51.93 -0.33 0.20 16 30 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.40 4.87 5.70 -40.82 -0.23 4.64 16 34 H 0.18 3.64 5.10 -52.49 -0.27 3.37 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.25 7.14 -51.93 -0.37 0.88 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.54 7.50 -51.93 -0.39 0.15 16 46 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 372.95 15.07 5.62 5.62 Total: -1.00 -34.78 372.95 -8.38 -43.16 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.01 Total: 4.37 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -1.93 Total: 8.38 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.27 Total: -59.45 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.31 Total: -18.72 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.78 -8.38 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599894272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.015 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds