Wall clock time and date at job start Tue Mar 31 2020 13:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 120.00009 * 2 1 4 4 C 1.50699 * 109.47291 * 269.99749 * 3 2 1 5 5 H 1.08002 * 119.99550 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00250 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99682 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00003 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47039 * 90.00406 * 8 6 4 10 10 H 1.48505 * 109.46972 * 209.99792 * 8 6 4 11 11 H 1.48493 * 109.47400 * 330.00161 * 8 6 4 12 12 C 1.34776 * 120.00388 * 179.97438 * 2 1 3 13 13 O 1.21590 * 120.00194 * 180.02562 * 12 2 1 14 14 N 1.34778 * 119.99879 * 0.02562 * 12 2 1 15 15 C 1.39498 * 120.00415 * 180.02562 * 14 12 2 16 16 C 1.36105 * 126.21195 * 0.28794 * 15 14 12 17 17 C 1.39763 * 107.82577 * 180.14587 * 16 15 14 18 18 C 1.50699 * 125.84114 * 179.86589 * 17 16 15 19 19 C 1.53175 * 109.54351 * 34.27633 * 18 17 16 20 20 C 1.53094 * 109.16661 * 183.15290 * 19 18 17 21 21 O 1.42898 * 109.41211 * 57.60371 * 20 19 18 22 22 C 1.42897 * 114.10001 * 298.84343 * 21 20 19 23 23 C 1.53089 * 109.41656 * 61.16248 * 22 21 20 24 24 N 1.30850 * 108.32065 * 359.60645 * 17 16 15 25 25 N 1.35244 * 126.21691 * 180.02562 * 15 14 12 26 26 C 1.46497 * 126.04632 * 0.03051 * 25 15 14 27 27 H 1.08993 * 109.47397 * 270.00340 * 1 2 3 28 28 H 1.09004 * 109.47132 * 30.00219 * 1 2 3 29 29 H 1.09000 * 109.46866 * 149.99903 * 1 2 3 30 30 H 1.09006 * 109.46966 * 29.99719 * 3 2 1 31 31 H 1.09002 * 109.47107 * 149.99490 * 3 2 1 32 32 H 0.97006 * 119.99964 * 179.97438 * 7 6 4 33 33 H 0.97003 * 119.99626 * 359.97438 * 14 12 2 34 34 H 1.07999 * 126.08872 * 359.97438 * 16 15 14 35 35 H 1.09004 * 109.61503 * 154.49190 * 18 17 16 36 36 H 1.09004 * 109.52259 * 303.05556 * 19 18 17 37 37 H 1.09006 * 109.52330 * 63.24389 * 19 18 17 38 38 H 1.09006 * 109.47665 * 297.62062 * 20 19 18 39 39 H 1.08993 * 109.47955 * 177.58818 * 20 19 18 40 40 H 1.09002 * 109.48425 * 301.17758 * 22 21 20 41 41 H 1.09002 * 109.48369 * 181.14801 * 22 21 20 42 42 H 1.08997 * 109.52675 * 182.48845 * 23 22 21 43 43 H 1.08995 * 109.52428 * 62.29514 * 23 22 21 44 44 H 1.08994 * 109.47719 * 269.98529 * 26 25 15 45 45 H 1.09003 * 109.47119 * 29.99213 * 26 25 15 46 46 H 1.09000 * 109.47393 * 149.98217 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8780 -1.6728 7 7 3.5533 3.6181 -0.6731 8 14 3.4380 3.4168 -3.4339 9 1 2.3079 4.2591 -3.9014 10 1 4.6980 4.2004 -3.4960 11 1 3.5562 2.2196 -4.3043 12 6 2.1389 -1.1671 0.0005 13 8 3.3548 -1.1671 0.0010 14 7 1.4651 -2.3344 0.0005 15 6 2.1625 -3.5425 0.0016 16 6 3.5156 -3.6898 0.0082 17 6 3.7969 -5.0588 0.0035 18 6 5.1712 -5.6773 0.0052 19 6 6.1254 -4.8031 0.8247 20 6 7.5350 -5.3964 0.7557 21 8 7.9460 -5.4866 -0.6100 22 6 7.1180 -6.3292 -1.4140 23 6 5.6917 -5.7734 -1.4322 24 7 2.6630 -5.7118 0.0029 25 7 1.6171 -4.7801 0.0012 26 6 0.1855 -5.0912 -0.0010 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6083 2.0284 0.5138 31 1 3.1498 1.1384 0.5139 32 1 4.0301 4.4440 -0.8503 33 1 0.4950 -2.3344 0.0005 34 1 4.2424 -2.8911 0.0132 35 1 5.1232 -6.6743 0.4431 36 1 6.1352 -3.7926 0.4163 37 1 5.7927 -4.7744 1.8624 38 1 7.5328 -6.3913 1.2012 39 1 8.2265 -4.7549 1.3018 40 1 7.1104 -7.3363 -0.9970 41 1 7.5092 -6.3598 -2.4310 42 1 5.0488 -6.4385 -2.0086 43 1 5.6927 -4.7825 -1.8862 44 1 -0.1712 -5.1682 1.0260 45 1 -0.3577 -4.2988 -0.5159 46 1 0.0203 -6.0381 -0.5149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599894272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:47 Heat of formation + Delta-G solvation = -9.514296 kcal Electronic energy + Delta-G solvation = -27775.809319 eV Core-core repulsion = 23894.887816 eV Total energy + Delta-G solvation = -3880.921502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.67414 -41.02938 -40.07304 -36.86984 -36.42111 -35.38799 -34.58519 -33.23082 -32.03434 -30.48714 -29.38059 -27.98493 -27.41992 -25.70149 -25.13309 -24.45122 -22.74003 -21.60029 -21.24794 -20.24725 -19.11866 -18.69610 -18.18896 -17.19162 -17.04928 -16.90342 -16.85399 -16.46136 -16.18930 -15.75684 -15.64261 -15.19989 -14.89995 -14.76274 -14.52114 -14.26703 -14.00075 -13.93861 -13.57673 -13.52582 -13.28567 -13.20047 -13.16370 -12.86277 -12.53986 -12.41642 -12.26853 -12.20640 -12.14800 -11.74702 -11.68335 -11.52814 -11.24924 -10.96325 -10.62863 -10.50511 -9.82242 -9.61798 -9.03269 -8.21836 -6.36124 0.73922 0.95116 1.36851 1.40506 1.50199 1.68552 1.91086 2.24858 2.39926 2.89005 3.01928 3.08622 3.34105 3.75780 3.90233 3.94488 4.08627 4.20165 4.24881 4.34831 4.36659 4.41149 4.52579 4.56534 4.61570 4.63051 4.69506 4.75842 4.81368 4.82936 4.90493 4.93891 4.97432 5.07502 5.15161 5.19809 5.21145 5.38871 5.52149 5.69032 5.80655 5.87400 6.05023 6.08460 6.32030 6.66126 6.71981 6.94506 7.30016 7.50431 8.84802 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010903 B = 0.003661 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.443258 B = 7646.074047 C = 9392.183784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.613 5.613 3 C 0.277 3.723 4 C -0.544 4.544 5 H 0.051 0.949 6 C 0.012 3.988 7 N -0.926 5.926 8 Si 0.964 3.036 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.700 3.300 13 O -0.600 6.600 14 N -0.647 5.647 15 C 0.327 3.673 16 C -0.307 4.307 17 C 0.094 3.906 18 C -0.001 4.001 19 C -0.145 4.145 20 C 0.065 3.935 21 O -0.406 6.406 22 C 0.064 3.936 23 C -0.141 4.141 24 N -0.307 5.307 25 N -0.388 5.388 26 C 0.088 3.912 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.035 0.965 31 H 0.003 0.997 32 H 0.268 0.732 33 H 0.421 0.579 34 H 0.141 0.859 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.845 -21.244 2.330 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.348 5.348 3 C 0.155 3.845 4 C -0.583 4.583 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.565 5.565 8 Si 0.789 3.211 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.401 3.599 13 O -0.478 6.478 14 N -0.301 5.301 15 C 0.105 3.895 16 C -0.339 4.339 17 C -0.072 4.072 18 C -0.021 4.021 19 C -0.184 4.184 20 C -0.012 4.012 21 O -0.325 6.325 22 C -0.013 4.013 23 C -0.180 4.180 24 N -0.130 5.130 25 N -0.176 5.176 26 C -0.051 4.051 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.021 0.979 32 H 0.076 0.924 33 H 0.261 0.739 34 H 0.159 0.841 35 H 0.121 0.879 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.120 0.880 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.539 -22.019 2.315 22.822 hybrid contribution -0.294 1.703 -0.657 1.849 sum -5.833 -20.316 1.658 21.202 Atomic orbital electron populations 1.21973 0.77650 1.04175 1.02991 1.47331 1.08114 1.04362 1.75002 1.18762 0.91111 0.78536 0.96056 1.21696 1.37027 1.06476 0.93091 0.93038 1.25768 0.94863 0.96432 1.01652 1.70033 1.38834 1.14791 1.32852 0.85471 0.78145 0.78100 0.79418 1.18661 1.20686 1.20210 1.15782 0.84997 0.80522 0.78604 1.90840 1.13553 1.85689 1.57685 1.41804 1.10237 1.01139 1.76921 1.17666 0.91040 0.80339 1.00455 1.21398 0.93887 0.97295 1.21333 1.22249 0.95143 0.91685 0.98106 1.19597 0.86208 0.99217 0.97122 1.22192 0.95969 0.99389 1.00830 1.22684 0.94238 1.01513 0.82752 1.87916 1.53238 1.69676 1.21687 1.22706 0.88554 0.93428 0.96571 1.22173 0.98208 1.02074 0.95540 1.77236 0.93838 1.12995 1.28886 1.48647 1.07912 1.00397 1.60616 1.22243 0.72777 1.05071 1.05017 0.90519 0.90328 0.89680 0.94736 0.97923 0.92350 0.73872 0.84108 0.87936 0.93033 0.90207 0.90676 0.87984 0.90733 0.87623 0.89796 0.93168 0.88968 0.87996 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.98 10.20 127.77 1.30 3.28 16 2 N -0.61 -25.20 2.86 -869.32 -2.48 -27.68 16 3 C 0.28 14.53 5.16 85.63 0.44 14.97 16 4 C -0.54 -30.92 9.39 25.60 0.24 -30.68 16 5 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 6 C 0.01 0.70 5.46 84.66 0.46 1.16 16 7 N -0.93 -55.23 13.29 21.45 0.28 -54.95 16 8 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 9 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 C 0.70 29.78 8.24 179.05 1.48 31.25 16 13 O -0.60 -31.69 13.05 -4.00 -0.05 -31.74 16 14 N -0.65 -20.29 5.28 -322.31 -1.70 -21.99 16 15 C 0.33 10.89 7.66 131.31 1.01 11.89 16 16 C -0.31 -11.66 8.80 22.14 0.19 -11.46 16 17 C 0.09 2.96 6.14 43.07 0.26 3.23 16 18 C 0.00 -0.03 2.74 -11.42 -0.03 -0.06 16 19 C -0.15 -3.70 5.06 30.68 0.16 -3.55 16 20 C 0.06 1.34 6.84 72.01 0.49 1.83 16 21 O -0.41 -10.02 10.76 -148.98 -1.60 -11.62 16 22 C 0.06 1.24 6.84 72.01 0.49 1.73 16 23 C -0.14 -3.33 5.40 30.68 0.17 -3.16 16 24 N -0.31 -9.17 12.56 -47.44 -0.60 -9.77 16 25 N -0.39 -10.38 4.02 -366.46 -1.47 -11.86 16 26 C 0.09 1.27 11.28 127.77 1.44 2.71 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 2.20 8.07 -2.38 -0.02 2.18 16 29 H 0.08 1.61 6.36 -2.39 -0.02 1.59 16 30 H 0.03 1.81 8.07 -2.38 -0.02 1.79 16 31 H 0.00 0.16 7.42 -2.39 -0.02 0.14 16 32 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 33 H 0.42 9.07 5.70 -92.71 -0.53 8.54 16 34 H 0.14 6.44 5.10 -2.91 -0.01 6.42 16 35 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.05 1.66 7.14 -2.38 -0.02 1.64 16 37 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.10 0.98 7.50 -2.39 -0.02 0.96 16 46 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -80.23 372.95 2.97 -77.26 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.46 Total: 22.39 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 8.11 Total: 23.15 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -5.97 Total: -126.25 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -1.66 Total: -43.37 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -80.23 2.97 -77.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599894272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.741 kcal (2) G-P(sol) polarization free energy of solvation -80.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds