Wall clock time and date at job start Tue Mar 31 2020 13:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00262 * 2 1 4 4 C 1.52997 * 109.47493 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47157 * 179.97438 * 4 3 2 6 6 C 1.34260 * 125.75422 * 125.00161 * 5 4 3 7 7 C 1.38044 * 107.41870 * 179.97438 * 6 5 4 8 8 C 1.47433 * 126.41347 * 179.97438 * 7 6 5 9 9 O 1.21602 * 119.99695 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99684 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99575 * 179.72978 * 10 8 7 12 12 C 1.53047 * 109.45906 * 275.30380 * 11 10 8 13 13 C 1.53196 * 109.31277 * 178.60419 * 12 11 10 14 14 N 1.46930 * 108.76515 * 54.65054 * 13 12 11 15 15 C 1.36937 * 120.62814 * 126.40547 * 14 13 12 16 16 H 1.08005 * 119.99699 * 331.82137 * 15 14 13 17 17 C 1.38814 * 119.99856 * 151.82338 * 15 14 13 18 18 N 1.31612 * 119.99769 * 343.08008 * 17 15 14 19 19 Si 1.86797 * 119.99681 * 163.08114 * 17 15 14 20 20 H 1.48497 * 109.47390 * 60.00007 * 19 17 15 21 21 H 1.48498 * 109.46874 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47277 * 299.99809 * 19 17 15 23 23 C 1.46919 * 118.74106 * 306.38426 * 14 13 12 24 24 C 1.53040 * 109.46130 * 155.24874 * 11 10 8 25 25 C 1.41289 * 107.17147 * 0.24207 * 7 6 5 26 26 N 1.30447 * 108.01929 * 359.59136 * 25 7 6 27 27 H 1.09001 * 109.47379 * 59.99682 * 1 2 3 28 28 H 1.09005 * 109.47357 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46843 * 300.00124 * 1 2 3 30 30 H 1.08998 * 109.46941 * 59.99731 * 3 2 1 31 31 H 1.09009 * 109.47192 * 300.00751 * 3 2 1 32 32 H 1.09004 * 109.47026 * 60.00070 * 4 3 2 33 33 H 1.08994 * 109.47082 * 300.00088 * 4 3 2 34 34 H 1.08008 * 126.29056 * 0.02562 * 6 5 4 35 35 H 0.96990 * 119.99946 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.46436 * 35.27398 * 11 10 8 37 37 H 1.09000 * 109.49437 * 298.56596 * 12 11 10 38 38 H 1.08993 * 109.49695 * 58.66340 * 12 11 10 39 39 H 1.08997 * 109.59313 * 294.86455 * 13 12 11 40 40 H 1.08993 * 109.70321 * 174.50270 * 13 12 11 41 41 H 0.97006 * 119.99529 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.59050 * 293.82718 * 23 14 13 43 43 H 1.08994 * 109.70794 * 173.46465 * 23 14 13 44 44 H 1.09001 * 109.49282 * 301.33392 * 24 11 10 45 45 H 1.09005 * 109.49735 * 61.39736 * 24 11 10 46 46 H 1.07995 * 125.98617 * 179.73537 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 5.0217 2.9857 0.8907 7 6 5.3274 4.2838 0.5342 8 6 6.2630 5.1854 1.2307 9 8 6.8524 4.8016 2.2227 10 7 6.4650 6.4351 0.7680 11 6 7.3903 7.3330 1.4636 12 6 6.6583 8.0277 2.6142 13 6 7.6375 8.9392 3.3607 14 7 8.2559 9.8592 2.3962 15 6 8.2249 11.2123 2.6041 16 1 7.4166 11.6535 3.1684 17 6 9.2323 12.0168 2.0895 18 7 10.3693 11.4798 1.7008 19 14 8.9741 13.8615 1.9489 20 1 8.7147 14.4292 3.2963 21 1 10.1909 14.4891 1.3738 22 1 7.8119 14.1328 1.0653 23 6 8.9086 9.2996 1.2048 24 6 7.9152 8.3839 0.4826 25 6 4.5710 4.5886 -0.6196 26 7 3.8688 3.5345 -0.9319 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8567 0.6439 -0.8909 33 1 3.8574 0.6436 0.8891 34 1 5.4253 2.4419 1.7321 35 1 5.9952 6.7410 -0.0234 36 1 8.2262 6.7569 1.8602 37 1 5.8375 8.6240 2.2158 38 1 6.2644 7.2779 3.3002 39 1 8.4099 8.3346 3.8359 40 1 7.1024 9.5105 4.1191 41 1 11.0734 12.0421 1.3416 42 1 9.7846 8.7244 1.5041 43 1 9.2119 10.1071 0.5385 44 1 8.4160 7.8875 -0.3486 45 1 7.0823 8.9764 0.1041 46 1 4.5753 5.5286 -1.1512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004062883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:56 Heat of formation + Delta-G solvation = -6.947210 kcal Electronic energy + Delta-G solvation = -26538.195863 eV Core-core repulsion = 22657.385678 eV Total energy + Delta-G solvation = -3880.810185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.42805 -40.56095 -39.02152 -38.74714 -35.93640 -34.98561 -33.84258 -31.88729 -31.53191 -31.17514 -30.01739 -27.38190 -26.82881 -24.75053 -24.26548 -23.82365 -22.97210 -21.71919 -21.13989 -20.73630 -19.13724 -18.55464 -17.60933 -17.33962 -17.11809 -16.71359 -16.55618 -16.40477 -15.95974 -15.67946 -15.40281 -15.29466 -15.12486 -14.90472 -14.63328 -14.30190 -14.14129 -14.10027 -13.74418 -13.18233 -13.05830 -12.97098 -12.72823 -12.55539 -12.52210 -12.36147 -12.22425 -12.01606 -11.98475 -11.83518 -11.51708 -11.30311 -10.84657 -10.78190 -10.64134 -10.52437 -10.05101 -9.64946 -8.67775 -7.85291 -5.30845 0.50074 1.14073 1.19851 1.50517 1.52127 1.59376 2.34218 2.50759 2.54220 2.72591 3.30461 3.49903 3.69430 3.79192 3.85005 3.85433 3.96311 4.09055 4.14990 4.19188 4.29945 4.38686 4.44859 4.48379 4.50396 4.62540 4.65389 4.69112 4.72831 4.82556 4.86524 4.91567 5.09673 5.10549 5.19994 5.33897 5.38565 5.50901 5.63439 5.67262 5.74877 5.75886 6.01625 6.41360 6.46639 6.73647 7.17094 7.38636 7.86911 8.39923 9.21560 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.034902 B = 0.001971 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.049455 B =14205.968492 C =14321.387854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.056 3.944 4 C 0.130 3.870 5 N -0.358 5.358 6 C 0.138 3.862 7 C -0.310 4.310 8 C 0.592 3.408 9 O -0.594 6.594 10 N -0.707 5.707 11 C 0.165 3.835 12 C -0.123 4.123 13 C 0.144 3.856 14 N -0.608 5.608 15 C -0.264 4.264 16 H 0.067 0.933 17 C -0.049 4.049 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.276 1.276 23 C 0.178 3.822 24 C -0.129 4.129 25 C 0.091 3.909 26 N -0.318 5.318 27 H 0.049 0.951 28 H 0.104 0.896 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.133 0.867 34 H 0.207 0.793 35 H 0.411 0.589 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.007 0.993 40 H 0.057 0.943 41 H 0.250 0.750 42 H -0.006 1.006 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.933 -22.077 -6.859 29.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.021 4.021 4 C 0.010 3.990 5 N -0.137 5.137 6 C -0.014 4.014 7 C -0.324 4.324 8 C 0.382 3.618 9 O -0.476 6.476 10 N -0.357 5.357 11 C 0.060 3.940 12 C -0.163 4.163 13 C 0.018 3.982 14 N -0.332 5.332 15 C -0.394 4.394 16 H 0.085 0.915 17 C -0.245 4.245 18 N -0.581 5.581 19 Si 0.797 3.203 20 H -0.204 1.204 21 H -0.221 1.221 22 H -0.201 1.201 23 C 0.052 3.948 24 C -0.168 4.168 25 C -0.096 4.096 26 N -0.137 5.137 27 H 0.067 0.933 28 H 0.122 0.878 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.151 0.849 34 H 0.224 0.776 35 H 0.248 0.752 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.025 0.975 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.012 0.988 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -19.215 -23.091 -7.061 30.858 hybrid contribution 0.622 1.812 0.358 1.949 sum -18.593 -21.279 -6.703 29.041 Atomic orbital electron populations 1.22968 0.78716 1.04283 1.00923 1.87750 1.21973 1.26987 1.95676 1.22551 0.92655 0.85276 1.01626 1.21736 0.92477 0.77509 1.07292 1.48493 1.32575 1.12548 1.20124 1.23317 0.89923 0.93991 0.94138 1.20202 1.10977 0.96828 1.04441 1.17574 0.80287 0.81284 0.82705 1.90751 1.51812 1.76698 1.28306 1.45791 1.45861 1.12481 1.31605 1.20620 0.91186 0.89492 0.92680 1.22171 0.98620 0.98004 0.97548 1.20970 0.93911 0.91508 0.91804 1.44333 1.65683 1.02110 1.21071 1.19486 1.04059 0.83311 1.32563 0.91528 1.25810 0.94286 1.02206 1.02183 1.70180 1.04470 1.35865 1.47580 0.85323 0.76647 0.80299 0.78042 1.20364 1.22109 1.20149 1.20563 0.91301 0.94595 0.88343 1.22259 1.00332 0.96540 0.97690 1.24501 0.92346 0.98530 0.94263 1.77136 1.25115 0.97310 1.14177 0.93277 0.87765 0.93199 0.92664 0.92388 0.87638 0.84921 0.77598 0.75197 0.92416 0.91503 0.92204 0.97498 0.92457 0.94049 0.98788 0.91882 0.90484 0.91032 0.76757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.46 16 2 O -0.41 -5.18 10.70 -148.98 -1.59 -6.78 16 3 C 0.06 0.67 6.11 71.98 0.44 1.11 16 4 C 0.13 1.36 6.86 86.38 0.59 1.95 16 5 N -0.36 -5.78 3.65 -346.30 -1.26 -7.04 16 6 C 0.14 2.49 11.25 84.28 0.95 3.44 16 7 C -0.31 -6.76 6.13 -20.15 -0.12 -6.89 16 8 C 0.59 16.93 7.78 86.66 0.67 17.61 16 9 O -0.59 -21.80 16.56 -4.04 -0.07 -21.87 16 10 N -0.71 -18.70 5.07 -445.66 -2.26 -20.96 16 11 C 0.17 5.61 2.41 45.02 0.11 5.72 16 12 C -0.12 -4.42 5.65 30.68 0.17 -4.25 16 13 C 0.14 6.28 6.52 86.36 0.56 6.85 16 14 N -0.61 -30.79 2.99 -699.11 -2.09 -32.88 16 15 C -0.26 -14.52 9.58 84.03 0.81 -13.71 16 16 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 17 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 18 N -0.94 -55.19 11.19 21.65 0.24 -54.95 16 19 Si 0.97 44.53 29.59 68.60 2.03 46.56 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 C 0.18 8.52 5.30 86.37 0.46 8.98 16 24 C -0.13 -4.55 5.55 30.67 0.17 -4.38 16 25 C 0.09 1.64 11.50 85.65 0.99 2.63 16 26 N -0.32 -6.13 12.33 -56.28 -0.69 -6.82 16 27 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.13 0.77 8.06 -2.39 -0.02 0.75 16 34 H 0.21 2.83 8.06 -2.91 -0.02 2.81 16 35 H 0.41 8.07 7.56 -92.72 -0.70 7.37 16 36 H 0.06 2.28 7.58 -2.39 -0.02 2.27 16 37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 41 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 42 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 44 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 46 H 0.22 2.45 7.50 -2.91 -0.02 2.43 16 Total: -1.00 -73.61 380.63 2.04 -71.57 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.28 Total: 14.99 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 7.46 Total: 18.18 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -6.07 Total: -122.65 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -1.66 Total: -28.65 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -73.61 2.04 -71.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004062883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.628 kcal (2) G-P(sol) polarization free energy of solvation -73.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds