Wall clock time and date at job start Tue Mar 31 2020 13:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.20829 * 120.00073 * 2 1 4 4 O 1.34263 * 120.00111 * 179.97438 * 2 1 3 5 5 C 1.35926 * 117.00171 * 185.17388 * 4 2 1 6 6 C 1.38738 * 120.05304 * 255.36330 * 5 4 2 7 7 C 1.38145 * 119.94448 * 180.02562 * 6 5 4 8 8 C 1.38266 * 120.05215 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.94060 * 179.97438 * 8 7 6 10 10 O 1.42890 * 109.47201 * 90.00408 * 9 8 7 11 11 C 1.42902 * 114.00082 * 184.72402 * 10 9 8 12 12 H 1.09001 * 109.47135 * 335.20584 * 11 10 9 13 13 C 1.50702 * 109.47091 * 215.20475 * 11 10 9 14 14 H 1.07998 * 120.00438 * 355.22648 * 13 11 10 15 15 C 1.37874 * 119.99759 * 175.23261 * 13 11 10 16 16 N 1.31516 * 120.00603 * 359.97438 * 15 13 11 17 17 Si 1.86807 * 120.00205 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47031 * 59.99067 * 17 15 13 19 19 H 1.48493 * 109.47235 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46654 * 299.99931 * 17 15 13 21 21 C 1.53002 * 109.47083 * 95.20291 * 11 10 9 22 22 N 1.46905 * 109.47200 * 54.21777 * 21 11 10 23 23 C 1.46898 * 109.47113 * 54.14676 * 22 21 11 24 24 C 1.46892 * 109.47372 * 174.14778 * 22 21 11 25 25 C 1.46900 * 109.46929 * 294.14782 * 22 21 11 26 26 C 1.38266 * 120.11619 * 0.25542 * 8 7 6 27 27 C 1.38146 * 120.05251 * 359.45126 * 26 8 7 28 28 H 1.09003 * 109.47128 * 270.00405 * 1 2 3 29 29 H 1.09008 * 109.47314 * 29.99883 * 1 2 3 30 30 H 1.09003 * 109.47370 * 149.99844 * 1 2 3 31 31 H 1.07995 * 120.02490 * 0.02562 * 6 5 4 32 32 H 1.07996 * 119.96844 * 180.02562 * 7 6 5 33 33 H 1.08996 * 109.47031 * 329.99885 * 9 8 7 34 34 H 1.09002 * 109.46853 * 210.00624 * 9 8 7 35 35 H 0.96995 * 120.00659 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47184 * 174.21770 * 21 11 10 37 37 H 1.08995 * 109.46988 * 294.22010 * 21 11 10 38 38 H 1.09000 * 109.47345 * 50.83035 * 23 22 21 39 39 H 1.08995 * 109.47318 * 170.83076 * 23 22 21 40 40 H 1.09002 * 109.47147 * 290.83557 * 23 22 21 41 41 H 1.09008 * 109.46787 * 59.99730 * 24 22 21 42 42 H 1.08996 * 109.47317 * 179.97438 * 24 22 21 43 43 H 1.09000 * 109.47075 * 300.00294 * 24 22 21 44 44 H 1.09007 * 109.47308 * 76.41101 * 25 22 21 45 45 H 1.08996 * 109.47247 * 196.40751 * 25 22 21 46 46 H 1.09001 * 109.47598 * 316.41206 * 25 22 21 47 47 H 1.07994 * 119.97236 * 179.69897 * 26 8 7 48 48 H 1.08000 * 120.02922 * 180.24886 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1782 -1.1627 0.0005 5 6 3.5314 -1.0940 0.1097 6 6 4.3301 -1.3098 -1.0040 7 6 5.7051 -1.2399 -0.8903 8 6 6.2853 -0.9558 0.3321 9 6 7.7856 -0.8808 0.4533 10 8 8.2171 0.4588 0.2062 11 6 9.6370 0.6188 0.1915 12 1 10.0979 -0.1719 0.7837 13 6 9.9976 1.9599 0.7768 14 1 9.2190 2.6551 1.0539 15 6 11.3215 2.2993 0.9584 16 7 12.2697 1.4526 0.6214 17 14 11.7685 3.9614 1.6845 18 1 11.1771 4.0841 3.0412 19 1 13.2458 4.0804 1.7763 20 1 11.2375 5.0408 0.8138 21 6 10.1445 0.5382 -1.2497 22 7 9.4220 1.5125 -2.0784 23 6 9.5340 2.8471 -1.4750 24 6 10.0034 1.5347 -3.4272 25 6 8.0061 1.1300 -2.1617 26 6 5.4917 -0.7461 1.4447 27 6 4.1160 -0.8089 1.3351 28 1 -0.3633 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 3.8773 -1.5322 -1.9588 32 1 6.3272 -1.4074 -1.7571 33 1 8.2429 -1.5501 -0.2753 34 1 8.0843 -1.1792 1.4583 35 1 13.2011 1.6913 0.7495 36 1 11.2110 0.7619 -1.2724 37 1 9.9754 -0.4658 -1.6387 38 1 10.5812 3.0635 -1.2634 39 1 9.1416 3.5927 -2.1665 40 1 8.9626 2.8755 -0.5472 41 1 9.9202 0.5442 -3.8750 42 1 9.4671 2.2572 -4.0423 43 1 11.0540 1.8184 -3.3654 44 1 7.5041 1.3899 -1.2297 45 1 7.5344 1.6608 -2.9886 46 1 7.9291 0.0556 -2.3285 47 1 5.9475 -0.5291 2.3994 48 1 3.4964 -0.6410 2.2035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223557278.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:53 Heat of formation + Delta-G solvation = 16.435494 kcal Electronic energy + Delta-G solvation = -28614.774099 eV Core-core repulsion = 24754.455285 eV Total energy + Delta-G solvation = -3860.318814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.185 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.10785 -42.33156 -40.11455 -38.54185 -37.69316 -35.06271 -32.77463 -32.17484 -31.45913 -30.75321 -30.10683 -29.93825 -27.77810 -26.75257 -24.46984 -24.08945 -23.61230 -22.82154 -21.77809 -19.33758 -19.15165 -18.43583 -18.25750 -17.98195 -17.82762 -17.70133 -17.02136 -16.47307 -16.28826 -15.82111 -15.69978 -15.43854 -14.96995 -14.76142 -14.60023 -14.58138 -14.25036 -14.08177 -13.86202 -13.80762 -13.78292 -13.56780 -13.52315 -13.39976 -13.21342 -13.05206 -12.93234 -12.66180 -12.30685 -12.15718 -12.07446 -11.83297 -11.67706 -11.57187 -11.06456 -10.38590 -10.11676 -10.08863 -9.74952 -7.93376 -6.00463 -0.10131 0.24960 0.69200 1.03506 1.67345 1.94505 2.10854 2.15386 2.47969 2.65781 2.68485 2.70886 2.81685 3.18104 3.38213 3.38763 3.50574 3.55485 3.66411 3.78912 3.79553 3.86380 3.88663 3.93606 4.01510 4.07026 4.08051 4.17009 4.20403 4.21903 4.25257 4.41334 4.50500 4.52518 4.55374 4.63410 4.76869 4.86404 4.88812 5.04314 5.07835 5.23997 5.29094 5.37140 5.45587 5.78975 5.96670 6.16183 6.43958 6.73403 7.05726 7.66766 9.12298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.456 3.544 3 O -0.493 6.493 4 O -0.297 6.297 5 C 0.087 3.913 6 C -0.120 4.120 7 C -0.094 4.094 8 C -0.083 4.083 9 C 0.098 3.902 10 O -0.385 6.385 11 C 0.197 3.803 12 H 0.067 0.933 13 C -0.549 4.549 14 H 0.084 0.916 15 C 0.069 3.931 16 N -0.879 5.879 17 Si 0.902 3.098 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.268 1.268 21 C -0.021 4.021 22 N -0.248 5.248 23 C -0.036 4.036 24 C -0.043 4.043 25 C -0.042 4.042 26 C -0.079 4.079 27 C -0.122 4.122 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.283 0.717 36 H 0.147 0.853 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.076 0.924 40 H 0.160 0.840 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.149 0.851 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.135 0.865 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.432 -3.168 -10.703 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.300 3.700 3 O -0.378 6.378 4 O -0.212 6.212 5 C 0.046 3.954 6 C -0.138 4.138 7 C -0.112 4.112 8 C -0.083 4.083 9 C 0.021 3.979 10 O -0.306 6.306 11 C 0.140 3.860 12 H 0.085 0.915 13 C -0.586 4.586 14 H 0.102 0.898 15 C -0.138 4.138 16 N -0.514 5.514 17 Si 0.727 3.273 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.193 1.193 21 C -0.142 4.142 22 N 0.094 4.906 23 C -0.176 4.176 24 C -0.185 4.185 25 C -0.183 4.183 26 C -0.097 4.097 27 C -0.140 4.140 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.165 0.835 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.095 0.905 40 H 0.178 0.822 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.131 0.869 44 H 0.166 0.834 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.153 0.847 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.121 -2.724 -10.745 13.176 hybrid contribution 0.669 0.400 0.412 0.881 sum -6.453 -2.324 -10.333 12.402 Atomic orbital electron populations 1.21664 0.85893 1.06352 1.06319 1.24366 0.92179 0.81253 0.72200 1.90752 1.70589 1.32462 1.43988 1.84653 1.18036 1.35145 1.83403 1.18557 0.80661 1.02314 0.93881 1.21102 0.93673 1.01370 0.97668 1.20836 0.93715 0.99565 0.97063 1.19768 0.94971 1.00049 0.93508 1.21339 0.89753 0.85635 1.01124 1.87898 1.24502 1.26281 1.91870 1.20165 0.76805 1.00653 0.88401 0.91503 1.20976 0.92625 1.00011 1.44959 0.89801 1.24965 0.95724 0.98861 0.94221 1.69690 1.01735 1.35531 1.44405 0.86402 0.78626 0.81211 0.81054 1.18984 1.20283 1.19325 1.24758 1.02626 0.90455 0.96398 1.45714 1.14360 1.17065 1.13416 1.24937 1.10058 0.79050 1.03578 1.24006 1.03943 1.07276 0.83260 1.24428 0.80187 1.04475 1.09252 1.21000 0.92328 0.97132 0.99201 1.21327 0.95791 1.00008 0.96871 0.87242 0.87466 0.88399 0.85036 0.85453 0.92890 0.91680 0.90654 0.83530 0.89614 0.86693 0.90549 0.82243 0.87569 0.87406 0.86889 0.83375 0.88779 0.88403 0.84683 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.52 10.41 36.00 0.37 0.89 16 2 C 0.46 0.39 7.90 36.00 0.28 0.68 16 3 O -0.49 -2.20 16.70 -18.75 -0.31 -2.51 16 4 O -0.30 -0.38 10.03 -23.62 -0.24 -0.61 16 5 C 0.09 0.13 5.10 -39.21 -0.20 -0.07 16 6 C -0.12 0.04 9.99 -39.43 -0.39 -0.35 16 7 C -0.09 0.18 9.69 -39.61 -0.38 -0.20 16 8 C -0.08 0.07 5.51 -104.60 -0.58 -0.51 16 9 C 0.10 -0.13 5.84 36.01 0.21 0.08 16 10 O -0.39 0.20 5.89 -35.23 -0.21 -0.01 16 11 C 0.20 0.21 2.25 -27.88 -0.06 0.15 16 12 H 0.07 0.27 7.76 -51.93 -0.40 -0.13 16 13 C -0.55 -2.37 5.19 -34.44 -0.18 -2.54 16 14 H 0.08 0.42 6.74 -52.49 -0.35 0.06 16 15 C 0.07 0.44 4.12 -17.82 -0.07 0.37 16 16 N -0.88 -6.71 11.67 55.43 0.65 -6.06 16 17 Si 0.90 6.06 29.54 -169.99 -5.02 1.04 16 18 H -0.27 -2.26 7.11 56.52 0.40 -1.86 16 19 H -0.28 -2.32 7.11 56.52 0.40 -1.92 16 20 H -0.27 -1.56 7.11 56.52 0.40 -1.16 16 21 C -0.02 0.07 4.20 -3.82 -0.02 0.05 16 22 N -0.25 1.66 0.05 -395.63 -0.02 1.64 16 23 C -0.04 0.16 6.59 60.06 0.40 0.55 16 24 C -0.04 0.41 7.93 60.06 0.48 0.88 16 25 C -0.04 0.31 7.20 60.06 0.43 0.74 16 26 C -0.08 -0.04 9.69 -39.60 -0.38 -0.42 16 27 C -0.12 -0.16 9.67 -39.43 -0.38 -0.54 16 28 H 0.11 -0.53 8.14 -51.93 -0.42 -0.96 16 29 H 0.11 -0.44 8.14 -51.92 -0.42 -0.87 16 30 H 0.10 -0.50 8.14 -51.93 -0.42 -0.92 16 31 H 0.13 -0.26 8.06 -52.49 -0.42 -0.68 16 32 H 0.13 -0.64 7.47 -52.49 -0.39 -1.03 16 33 H 0.05 -0.17 8.08 -51.93 -0.42 -0.59 16 34 H 0.06 -0.02 8.08 -51.93 -0.42 -0.43 16 35 H 0.28 2.38 8.31 -40.82 -0.34 2.05 16 36 H 0.15 -0.10 6.28 -51.93 -0.33 -0.42 16 37 H 0.09 -0.45 7.88 -51.93 -0.41 -0.86 16 38 H 0.11 -0.24 6.52 -51.93 -0.34 -0.58 16 39 H 0.08 -0.54 8.01 -51.93 -0.42 -0.95 16 40 H 0.16 -0.30 4.22 -51.93 -0.22 -0.52 16 41 H 0.11 -1.15 8.14 -51.92 -0.42 -1.57 16 42 H 0.11 -1.20 7.95 -51.93 -0.41 -1.62 16 43 H 0.11 -1.01 8.11 -51.93 -0.42 -1.43 16 44 H 0.15 -0.69 5.20 -51.92 -0.27 -0.96 16 45 H 0.09 -0.89 7.86 -51.93 -0.41 -1.30 16 46 H 0.10 -0.82 7.18 -51.93 -0.37 -1.19 16 47 H 0.14 -0.04 8.06 -52.49 -0.42 -0.46 16 48 H 0.13 0.07 8.06 -52.49 -0.42 -0.36 16 LS Contribution 378.87 15.07 5.71 5.71 Total: 0.00 -14.11 378.87 -7.59 -21.70 By element: Atomic # 1 Polarization: -12.98 SS G_CDS: -7.68 Total: -20.66 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -0.48 Total: -0.24 kcal Atomic # 7 Polarization: -5.05 SS G_CDS: 0.63 Total: -4.42 kcal Atomic # 8 Polarization: -2.38 SS G_CDS: -0.76 Total: -3.14 kcal Atomic # 14 Polarization: 6.06 SS G_CDS: -5.02 Total: 1.04 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -14.11 -7.59 -21.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223557278.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.138 kcal (2) G-P(sol) polarization free energy of solvation -14.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds