Wall clock time and date at job start Tue Mar 31 2020 13:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46894 * 110.99776 * 2 1 4 4 C 1.46898 * 110.99792 * 123.95474 * 2 1 3 5 5 C 1.52997 * 109.47235 * 66.04648 * 4 2 1 6 6 C 1.53006 * 109.46977 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.46992 * 179.97438 * 6 5 4 8 8 C 1.46490 * 120.00322 * 269.99874 * 7 6 5 9 9 C 1.50700 * 109.47314 * 270.00006 * 8 7 6 10 10 H 1.07993 * 120.00043 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99981 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00347 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00205 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46990 * 60.00108 * 13 11 9 15 15 H 1.48500 * 109.47421 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46697 * 300.00428 * 13 11 9 17 17 C 1.34780 * 119.99566 * 90.00440 * 7 6 5 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 7 6 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 7 6 20 20 C 1.50703 * 109.47064 * 179.97438 * 19 17 7 21 21 C 1.38215 * 120.01293 * 100.00060 * 20 19 17 22 22 C 1.38223 * 120.02750 * 179.97438 * 21 20 19 23 23 C 1.38273 * 120.04965 * 0.02562 * 22 21 20 24 24 C 1.38178 * 120.02564 * 0.02562 * 23 22 21 25 25 C 1.38445 * 120.01246 * 279.72227 * 20 19 17 26 26 F 1.35105 * 120.02239 * 0.02562 * 25 20 19 27 27 H 1.08994 * 109.47363 * 296.04811 * 1 2 3 28 28 H 1.09005 * 109.46709 * 56.04692 * 1 2 3 29 29 H 1.09004 * 109.46936 * 176.04442 * 1 2 3 30 30 H 1.09009 * 109.47075 * 183.95450 * 3 2 1 31 31 H 1.09001 * 109.47456 * 303.95257 * 3 2 1 32 32 H 1.08996 * 109.47371 * 63.95131 * 3 2 1 33 33 H 1.08998 * 109.46968 * 306.04171 * 4 2 1 34 34 H 1.09000 * 109.46836 * 186.05152 * 4 2 1 35 35 H 1.09000 * 109.47241 * 60.00328 * 5 4 2 36 36 H 1.09002 * 109.47129 * 299.99861 * 5 4 2 37 37 H 1.09000 * 109.46856 * 60.00106 * 6 5 4 38 38 H 1.09000 * 109.46976 * 300.00431 * 6 5 4 39 39 H 1.09006 * 109.47028 * 30.00444 * 8 7 6 40 40 H 1.09002 * 109.47109 * 150.00022 * 8 7 6 41 41 H 0.96998 * 120.00161 * 179.97438 * 12 11 9 42 42 H 1.09002 * 109.47060 * 299.99722 * 19 17 7 43 43 H 1.09001 * 109.47380 * 59.99809 * 19 17 7 44 44 H 1.07996 * 119.98644 * 359.97438 * 21 20 19 45 45 H 1.07996 * 119.97518 * 179.97438 * 22 21 20 46 46 H 1.07997 * 119.98896 * 179.97438 * 23 22 21 47 47 H 1.07998 * 120.01215 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9703 6 6 2.1803 -3.0405 2.1549 7 7 1.8313 -4.4543 1.9951 8 6 0.5749 -4.9656 2.5481 9 6 0.8042 -5.4421 3.9593 10 1 1.7875 -5.3707 4.4002 11 6 -0.2414 -5.9682 4.6878 12 7 -1.4390 -6.0547 4.1511 13 14 0.0427 -6.5582 6.4373 14 1 0.5258 -5.4268 7.2689 15 1 -1.2309 -7.0768 6.9979 16 1 1.0593 -7.6407 6.4356 17 6 2.6662 -5.2845 1.3392 18 8 3.7062 -4.8611 0.8810 19 6 2.3069 -6.7387 1.1742 20 6 3.3988 -7.4423 0.4101 21 6 4.3417 -8.1938 1.0859 22 6 5.3429 -8.8397 0.3854 23 6 5.4029 -8.7345 -0.9921 24 6 4.4620 -7.9830 -1.6697 25 6 3.4544 -7.3410 -0.9695 26 9 2.5303 -6.6109 -1.6315 27 1 -0.3634 0.4512 0.9232 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0828 1.3432 -0.0709 31 1 1.5898 1.9163 -0.8524 32 1 1.7043 1.8723 0.9232 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6610 1.1757 35 1 2.0659 -2.6214 0.0452 36 1 0.5471 -2.3475 0.9323 37 1 1.7463 -2.6618 3.0803 38 1 3.2646 -2.9355 2.1925 39 1 -0.1715 -4.1712 2.5496 40 1 0.2203 -5.7960 1.9374 41 1 -2.1745 -6.4252 4.6635 42 1 2.1953 -7.1990 2.1560 43 1 1.3687 -6.8212 0.6255 44 1 4.2960 -8.2763 2.1618 45 1 6.0794 -9.4263 0.9143 46 1 6.1859 -9.2393 -1.5384 47 1 4.5093 -7.9006 -2.7455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064361782.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:04 Heat of formation + Delta-G solvation = -60.056068 kcal Electronic energy + Delta-G solvation = -27549.587344 eV Core-core repulsion = 23646.554224 eV Total energy + Delta-G solvation = -3903.033120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.56790 -39.48649 -38.42972 -37.51014 -35.14395 -33.11643 -32.50721 -31.39677 -30.32486 -27.75643 -27.53626 -27.30782 -25.46530 -23.01545 -22.74276 -22.51420 -21.35124 -20.57281 -18.36302 -17.29230 -16.67912 -16.41066 -16.16128 -15.84660 -15.46126 -15.38692 -15.12070 -14.93861 -14.59157 -14.37527 -14.10026 -13.91936 -13.73548 -13.00762 -12.89709 -12.72924 -12.50393 -12.37316 -12.11478 -11.95850 -11.85454 -11.73988 -11.59684 -11.48332 -11.27782 -11.14855 -11.04643 -10.95396 -10.79500 -10.69386 -10.29156 -10.06189 -9.78342 -9.17279 -8.72494 -8.58596 -8.37169 -8.31525 -7.71389 -6.21360 -4.29569 1.37474 1.40761 3.21139 3.26911 3.28382 3.43694 3.67972 3.92825 4.16165 4.31546 4.52696 4.88356 4.95259 5.08620 5.11539 5.11963 5.17955 5.28687 5.37385 5.39619 5.49784 5.53609 5.59162 5.68185 5.73601 5.80032 5.85313 5.85900 5.93895 5.99122 6.04171 6.19066 6.19404 6.28160 6.34797 6.51318 6.52667 6.63470 6.66112 6.78183 7.06543 7.08892 7.09959 7.17255 7.54056 7.73369 8.02573 8.33761 8.76193 9.03273 9.38874 10.85073 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.006588 B = 0.005206 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4248.893372 B = 5377.113088 C = 8782.128736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.129 4.129 6 C 0.124 3.876 7 N -0.594 5.594 8 C 0.237 3.763 9 C -0.540 4.540 10 H 0.061 0.939 11 C 0.066 3.934 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.523 3.477 18 O -0.567 6.567 19 C -0.101 4.101 20 C -0.085 4.085 21 C -0.082 4.082 22 C -0.133 4.133 23 C -0.101 4.101 24 C -0.158 4.158 25 C 0.113 3.887 26 F -0.137 7.137 27 H 0.025 0.975 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.038 0.962 41 H 0.266 0.734 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.132 0.868 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.410 2.069 -7.837 10.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.168 4.168 6 C 0.000 4.000 7 N -0.324 5.324 8 C 0.117 3.883 9 C -0.579 4.579 10 H 0.079 0.921 11 C -0.137 4.137 12 N -0.528 5.528 13 Si 0.724 3.276 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.200 1.200 17 C 0.311 3.689 18 O -0.448 6.448 19 C -0.140 4.140 20 C -0.086 4.086 21 C -0.100 4.100 22 C -0.151 4.151 23 C -0.119 4.119 24 C -0.177 4.177 25 C 0.094 3.906 26 F -0.116 7.116 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.136 0.864 43 H 0.119 0.881 44 H 0.150 0.850 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.835 2.044 -8.474 11.720 hybrid contribution -0.604 0.243 1.722 1.841 sum 7.231 2.287 -6.752 10.154 Atomic orbital electron populations 1.22440 0.87399 1.02791 1.00066 1.61970 1.08112 1.13371 1.43779 1.22363 1.00712 0.89088 1.00150 1.22073 1.00008 0.93955 0.90842 1.21944 1.01513 0.93213 1.00092 1.21178 1.00384 0.81182 0.97298 1.48142 1.22641 1.07878 1.53747 1.19438 0.79808 0.95318 0.93731 1.21462 0.96050 1.42006 0.98375 0.92111 1.24941 0.94884 0.95428 0.98455 1.69912 1.00518 1.44826 1.37558 0.86585 0.77551 0.79239 0.84272 1.20164 1.21135 1.20036 1.20172 0.83420 0.87604 0.77740 1.90612 1.25509 1.78002 1.50674 1.20623 0.97213 0.93391 1.02821 1.19618 0.98277 0.98928 0.91760 1.20979 0.93230 0.95521 1.00282 1.21114 0.98932 1.00829 0.94254 1.20897 0.98189 0.98425 0.94417 1.21042 0.95674 1.00449 1.00501 1.17540 0.89046 0.94102 0.89914 1.91485 1.64152 1.75215 1.80737 0.95673 0.91777 0.90730 0.91473 0.91643 0.95870 0.94726 0.90814 0.91066 0.91740 0.90665 0.91067 0.94648 0.94381 0.92420 0.86413 0.88057 0.85032 0.85663 0.85534 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.32 60.07 0.56 0.82 16 2 N -0.55 -7.42 5.02 -251.26 -1.26 -8.69 16 3 C 0.03 0.27 9.57 60.06 0.57 0.85 16 4 C 0.06 0.85 4.96 -3.83 -0.02 0.83 16 5 C -0.13 -2.15 5.46 -26.73 -0.15 -2.29 16 6 C 0.12 2.30 5.41 -4.04 -0.02 2.28 16 7 N -0.59 -12.50 2.46 -175.06 -0.43 -12.93 16 8 C 0.24 5.52 4.96 -5.20 -0.03 5.49 16 9 C -0.54 -13.65 9.28 -34.44 -0.32 -13.97 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -24.04 13.29 55.43 0.74 -23.30 16 13 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 C 0.52 11.07 7.66 -10.98 -0.08 10.98 16 18 O -0.57 -13.06 15.54 5.56 0.09 -12.97 16 19 C -0.10 -1.90 4.11 -29.03 -0.12 -2.02 16 20 C -0.08 -1.46 4.43 -104.55 -0.46 -1.92 16 21 C -0.08 -1.22 9.67 -39.60 -0.38 -1.61 16 22 C -0.13 -1.66 10.04 -39.57 -0.40 -2.06 16 23 C -0.10 -1.21 10.04 -39.59 -0.40 -1.61 16 24 C -0.16 -2.18 10.03 -39.51 -0.40 -2.58 16 25 C 0.11 1.91 7.14 -39.42 -0.28 1.63 16 26 F -0.14 -2.50 16.66 2.25 0.04 -2.46 16 27 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 29 H 0.07 0.99 6.47 -51.93 -0.34 0.65 16 30 H 0.07 0.69 8.12 -51.92 -0.42 0.27 16 31 H 0.06 0.63 8.12 -51.93 -0.42 0.20 16 32 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.03 0.48 8.12 -51.93 -0.42 0.05 16 34 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.10 6.55 -51.93 -0.34 0.76 16 37 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 38 H 0.07 1.34 7.42 -51.93 -0.39 0.95 16 39 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 40 H 0.04 0.91 6.44 -51.93 -0.33 0.58 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.12 2.22 7.87 -51.93 -0.41 1.82 16 43 H 0.10 1.89 7.20 -51.93 -0.37 1.51 16 44 H 0.13 1.80 8.04 -52.49 -0.42 1.37 16 45 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 47 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -29.54 392.76 -9.58 -39.11 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.63 Total: 3.83 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -2.02 Total: -3.57 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.95 Total: -44.92 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.54 -9.58 -39.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064361782.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.943 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds