Wall clock time and date at job start Tue Mar 31 2020 12:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47131 * 2 1 4 4 C 1.53007 * 109.47095 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47095 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47163 * 181.92639 * 5 4 3 7 7 C 1.46905 * 111.00094 * 296.87757 * 6 5 4 8 8 C 1.50704 * 109.46966 * 288.20592 * 7 6 5 9 9 O 1.21292 * 119.99977 * 354.23503 * 8 7 6 10 10 N 1.34780 * 119.99946 * 174.23295 * 8 7 6 11 11 C 1.37097 * 120.00069 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99946 * 359.97438 * 11 10 8 13 13 C 1.38945 * 119.99950 * 179.97438 * 11 10 8 14 14 N 1.31418 * 119.99810 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 120.00277 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47433 * 89.99735 * 15 13 11 17 17 H 1.48499 * 109.47170 * 210.00059 * 15 13 11 18 18 H 1.48507 * 109.46894 * 329.99949 * 15 13 11 19 19 C 1.46897 * 111.00114 * 60.82947 * 6 5 4 20 20 C 1.50696 * 109.47031 * 66.04841 * 19 6 5 21 21 C 1.38248 * 119.97517 * 270.27827 * 20 19 6 22 22 C 1.38196 * 120.02717 * 180.23356 * 21 20 19 23 23 C 1.38460 * 119.97409 * 359.46813 * 22 21 20 24 24 F 1.35093 * 120.02670 * 180.30124 * 23 22 21 25 25 C 1.38463 * 119.94617 * 0.27226 * 23 22 21 26 26 C 1.38191 * 119.97464 * 0.02562 * 25 23 22 27 27 H 1.09004 * 109.46938 * 300.00163 * 1 2 3 28 28 H 1.09003 * 109.47158 * 59.99800 * 1 2 3 29 29 H 1.09001 * 109.47569 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46931 * 240.00335 * 2 1 3 31 31 H 1.08994 * 109.47399 * 120.00157 * 2 1 3 32 32 H 1.08995 * 109.47133 * 60.00200 * 3 2 1 33 33 H 1.09003 * 109.47263 * 300.00135 * 3 2 1 34 34 H 1.08995 * 109.47311 * 59.99888 * 4 3 2 35 35 H 1.09003 * 109.46832 * 299.99978 * 4 3 2 36 36 H 1.09004 * 109.47048 * 61.92642 * 5 4 3 37 37 H 1.09000 * 109.46952 * 301.92736 * 5 4 3 38 38 H 1.09000 * 109.46978 * 48.20038 * 7 6 5 39 39 H 1.08995 * 109.47398 * 168.20612 * 7 6 5 40 40 H 0.96996 * 119.99933 * 359.97438 * 10 8 7 41 41 H 0.97001 * 119.99692 * 179.97438 * 14 13 11 42 42 H 1.08997 * 109.46961 * 306.04976 * 19 6 5 43 43 H 1.08998 * 109.47143 * 186.04873 * 19 6 5 44 44 H 1.08003 * 119.98744 * 0.02562 * 21 20 19 45 45 H 1.07998 * 120.01559 * 179.74482 * 22 21 20 46 46 H 1.08004 * 120.01133 * 180.02562 * 25 23 22 47 47 H 1.08006 * 119.98708 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 7 5.5482 2.8852 -0.0472 7 6 6.1136 2.2509 1.1512 8 6 5.9171 3.1570 2.3393 9 8 5.4561 4.2683 2.1848 10 7 6.2534 2.7325 3.5735 11 6 6.0751 3.5570 4.6542 12 1 5.6655 4.5468 4.5166 13 6 6.4214 3.1191 5.9266 14 7 6.2509 3.9096 6.9625 15 14 7.1305 1.4075 6.1646 16 1 8.6101 1.4645 6.0519 17 1 6.7557 0.8989 7.5085 18 1 6.5894 0.4982 5.1226 19 6 6.0358 2.2311 -1.2687 20 6 5.6384 3.0498 -2.4698 21 6 4.4290 2.8144 -3.0968 22 6 4.0656 3.5613 -4.2013 23 6 4.9085 4.5533 -4.6733 24 9 4.5516 5.2882 -5.7492 25 6 6.1171 4.7918 -4.0413 26 6 6.4811 4.0395 -2.9407 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9330 0.9288 -0.8908 35 1 3.9337 0.9285 0.8891 36 1 3.7455 3.3882 0.9072 37 1 3.6883 3.4092 -0.8717 38 1 5.6101 1.3012 1.3314 39 1 7.1787 2.0748 1.0009 40 1 6.6216 1.8437 3.6970 41 1 6.4923 3.6038 7.8509 42 1 5.5989 1.2356 -1.3469 43 1 7.1220 2.1491 -1.2282 44 1 3.7693 2.0441 -2.7253 45 1 3.1226 3.3744 -4.6934 46 1 6.7752 5.5656 -4.4083 47 1 7.4240 4.2251 -2.4479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066492576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:24 Heat of formation + Delta-G solvation = -61.363998 kcal Electronic energy + Delta-G solvation = -27239.138154 eV Core-core repulsion = 23336.048318 eV Total energy + Delta-G solvation = -3903.089836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.00068 -39.85150 -38.57928 -37.10715 -35.25899 -33.88832 -31.70865 -31.64090 -31.28042 -30.62946 -27.60796 -26.43168 -24.70263 -23.44522 -23.14796 -22.03755 -21.17953 -20.26344 -19.21234 -18.13884 -17.77340 -16.58351 -16.28821 -15.90261 -15.73392 -15.62731 -15.44827 -14.89339 -14.76771 -14.16603 -13.97640 -13.79087 -13.60704 -13.58118 -13.38272 -13.27274 -13.11021 -12.59567 -12.30160 -12.20059 -12.02438 -11.95819 -11.61532 -11.56379 -11.37010 -11.14151 -11.08053 -11.01947 -10.89633 -10.77973 -10.59267 -10.32521 -9.96467 -9.52405 -9.20381 -8.72192 -8.56270 -8.15577 -7.88463 -6.29461 -3.80616 1.00212 1.12500 3.02153 3.06731 3.15066 3.38457 3.77755 4.08250 4.11875 4.14421 4.55211 4.62959 4.70948 4.77474 4.80829 4.83869 5.02573 5.05483 5.13042 5.18170 5.23214 5.35003 5.40704 5.46718 5.51089 5.55581 5.61682 5.68611 5.73315 5.79040 5.87134 5.89796 5.92416 5.96869 6.00035 6.00728 6.05809 6.11987 6.24619 6.30055 6.42929 6.51418 6.76640 7.15030 7.26383 7.60656 8.16779 8.62859 8.97862 9.44816 9.87108 10.83898 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011119 B = 0.003342 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.580994 B = 8375.293382 C =10136.972055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.163 4.163 5 C 0.052 3.948 6 N -0.505 5.505 7 C 0.038 3.962 8 C 0.455 3.545 9 O -0.555 6.555 10 N -0.594 5.594 11 C -0.302 4.302 12 H 0.119 0.881 13 C 0.041 3.959 14 N -0.883 5.883 15 Si 0.879 3.121 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.086 3.914 20 C -0.078 4.078 21 C -0.085 4.085 22 C -0.156 4.156 23 C 0.092 3.908 24 F -0.144 7.144 25 C -0.154 4.154 26 C -0.067 4.067 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.369 0.631 41 H 0.273 0.727 42 H 0.048 0.952 43 H 0.083 0.917 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 -9.274 -20.671 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.202 4.202 5 C -0.076 4.076 6 N -0.226 5.226 7 C -0.094 4.094 8 C 0.240 3.760 9 O -0.436 6.436 10 N -0.234 5.234 11 C -0.431 4.431 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.523 5.523 15 Si 0.705 3.295 16 H -0.197 1.197 17 H -0.203 1.203 18 H -0.196 1.196 19 C -0.041 4.041 20 C -0.079 4.079 21 C -0.103 4.103 22 C -0.175 4.175 23 C 0.072 3.928 24 F -0.123 7.123 25 C -0.173 4.173 26 C -0.085 4.085 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.202 0.798 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.151 0.849 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.750 -7.940 -20.572 22.368 hybrid contribution 0.242 -2.034 0.281 2.067 sum -3.507 -9.974 -20.292 22.881 Atomic orbital electron populations 1.21777 0.96052 1.01323 1.01861 1.21534 0.95730 0.97178 1.01729 1.21513 0.94975 0.96495 1.02328 1.22338 0.96362 0.99714 1.01785 1.22341 0.86388 0.94649 1.04226 1.61816 1.08014 1.53252 0.99567 1.21985 1.00558 0.95982 0.90841 1.19642 0.84374 0.88725 0.83264 1.90565 1.47396 1.21012 1.84658 1.42219 1.58675 1.15761 1.06770 1.19416 1.40291 0.99761 0.83647 0.86322 1.25024 0.97886 0.98037 0.95243 1.69625 1.47491 1.36091 0.99138 0.86687 0.80014 0.84206 0.78552 1.19651 1.20265 1.19575 1.21135 1.00648 0.94549 0.87798 1.19806 0.94485 0.97310 0.96270 1.20965 0.95927 0.99123 0.94303 1.21070 1.00451 0.97108 0.98868 1.17731 0.95272 0.93225 0.86539 1.91482 1.92033 1.75799 1.52985 1.21147 0.96137 1.02182 0.97856 1.20938 1.00031 0.93394 0.94186 0.92611 0.92888 0.93044 0.92425 0.92097 0.91575 0.92132 0.92123 0.91656 0.88886 0.90779 0.92806 0.89311 0.79844 0.91679 0.93401 0.89830 0.85221 0.85025 0.84863 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.15 0.37 -0.96 16 2 C -0.12 -1.17 5.93 -26.74 -0.16 -1.33 16 3 C -0.11 -1.22 5.21 -26.73 -0.14 -1.36 16 4 C -0.16 -1.88 4.36 -26.73 -0.12 -1.99 16 5 C 0.05 0.75 4.63 -3.83 -0.02 0.73 16 6 N -0.50 -7.47 4.30 -237.52 -1.02 -8.49 16 7 C 0.04 0.59 5.33 -4.97 -0.03 0.57 16 8 C 0.45 10.04 7.38 -10.98 -0.08 9.96 16 9 O -0.56 -14.63 14.69 5.55 0.08 -14.55 16 10 N -0.59 -13.88 5.09 -10.96 -0.06 -13.94 16 11 C -0.30 -8.47 10.16 -14.94 -0.15 -8.62 16 12 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 13 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 14 N -0.88 -25.75 13.96 55.50 0.77 -24.98 16 15 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 19 C 0.09 0.96 4.88 -4.98 -0.02 0.93 16 20 C -0.08 -0.86 4.89 -104.62 -0.51 -1.37 16 21 C -0.08 -0.86 7.93 -39.59 -0.31 -1.17 16 22 C -0.16 -1.59 10.03 -39.51 -0.40 -1.99 16 23 C 0.09 1.03 7.30 -39.42 -0.29 0.74 16 24 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 25 C -0.15 -1.65 10.03 -39.52 -0.40 -2.05 16 26 C -0.07 -0.73 9.70 -39.60 -0.38 -1.11 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.60 5.34 -51.93 -0.28 0.32 16 35 H 0.06 0.83 6.34 -51.93 -0.33 0.50 16 36 H 0.09 1.71 6.56 -51.93 -0.34 1.37 16 37 H 0.07 1.02 6.09 -51.93 -0.32 0.70 16 38 H 0.05 0.75 5.93 -51.93 -0.31 0.45 16 39 H 0.09 1.21 7.81 -51.93 -0.41 0.81 16 40 H 0.37 7.57 5.76 -40.82 -0.24 7.33 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.05 0.47 5.93 -51.93 -0.31 0.16 16 43 H 0.08 0.84 7.81 -51.93 -0.41 0.43 16 44 H 0.13 1.13 6.90 -52.48 -0.36 0.77 16 45 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 46 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 47 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -32.04 378.27 -9.00 -41.04 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -7.07 Total: 10.39 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -2.73 Total: -8.00 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.30 Total: -47.40 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.08 Total: -14.55 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.04 -9.00 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066492576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.323 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds