Wall clock time and date at job start Tue Mar 31 2020 12:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47131 * 2 1 4 4 C 1.53007 * 109.47095 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47095 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47163 * 181.92639 * 5 4 3 7 7 C 1.46905 * 111.00094 * 296.87757 * 6 5 4 8 8 C 1.50704 * 109.46966 * 288.20592 * 7 6 5 9 9 O 1.21292 * 119.99977 * 354.23503 * 8 7 6 10 10 N 1.34780 * 119.99946 * 174.23295 * 8 7 6 11 11 C 1.37097 * 120.00069 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99946 * 359.97438 * 11 10 8 13 13 C 1.38945 * 119.99950 * 179.97438 * 11 10 8 14 14 N 1.31418 * 119.99810 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 120.00277 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47433 * 89.99735 * 15 13 11 17 17 H 1.48499 * 109.47170 * 210.00059 * 15 13 11 18 18 H 1.48507 * 109.46894 * 329.99949 * 15 13 11 19 19 C 1.46897 * 111.00114 * 60.82947 * 6 5 4 20 20 C 1.50696 * 109.47031 * 66.04841 * 19 6 5 21 21 C 1.38248 * 119.97517 * 270.27827 * 20 19 6 22 22 C 1.38196 * 120.02717 * 180.23356 * 21 20 19 23 23 C 1.38460 * 119.97409 * 359.46813 * 22 21 20 24 24 F 1.35093 * 120.02670 * 180.30124 * 23 22 21 25 25 C 1.38463 * 119.94617 * 0.27226 * 23 22 21 26 26 C 1.38191 * 119.97464 * 0.02562 * 25 23 22 27 27 H 1.09004 * 109.46938 * 300.00163 * 1 2 3 28 28 H 1.09003 * 109.47158 * 59.99800 * 1 2 3 29 29 H 1.09001 * 109.47569 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46931 * 240.00335 * 2 1 3 31 31 H 1.08994 * 109.47399 * 120.00157 * 2 1 3 32 32 H 1.08995 * 109.47133 * 60.00200 * 3 2 1 33 33 H 1.09003 * 109.47263 * 300.00135 * 3 2 1 34 34 H 1.08995 * 109.47311 * 59.99888 * 4 3 2 35 35 H 1.09003 * 109.46832 * 299.99978 * 4 3 2 36 36 H 1.09004 * 109.47048 * 61.92642 * 5 4 3 37 37 H 1.09000 * 109.46952 * 301.92736 * 5 4 3 38 38 H 1.09000 * 109.46978 * 48.20038 * 7 6 5 39 39 H 1.08995 * 109.47398 * 168.20612 * 7 6 5 40 40 H 0.96996 * 119.99933 * 359.97438 * 10 8 7 41 41 H 0.97001 * 119.99692 * 179.97438 * 14 13 11 42 42 H 1.08997 * 109.46961 * 306.04976 * 19 6 5 43 43 H 1.08998 * 109.47143 * 186.04873 * 19 6 5 44 44 H 1.08003 * 119.98744 * 0.02562 * 21 20 19 45 45 H 1.07998 * 120.01559 * 179.74482 * 22 21 20 46 46 H 1.08004 * 120.01133 * 180.02562 * 25 23 22 47 47 H 1.08006 * 119.98708 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 7 5.5482 2.8852 -0.0472 7 6 6.1136 2.2509 1.1512 8 6 5.9171 3.1570 2.3393 9 8 5.4561 4.2683 2.1848 10 7 6.2534 2.7325 3.5735 11 6 6.0751 3.5570 4.6542 12 1 5.6655 4.5468 4.5166 13 6 6.4214 3.1191 5.9266 14 7 6.2509 3.9096 6.9625 15 14 7.1305 1.4075 6.1646 16 1 8.6101 1.4645 6.0519 17 1 6.7557 0.8989 7.5085 18 1 6.5894 0.4982 5.1226 19 6 6.0358 2.2311 -1.2687 20 6 5.6384 3.0498 -2.4698 21 6 4.4290 2.8144 -3.0968 22 6 4.0656 3.5613 -4.2013 23 6 4.9085 4.5533 -4.6733 24 9 4.5516 5.2882 -5.7492 25 6 6.1171 4.7918 -4.0413 26 6 6.4811 4.0395 -2.9407 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9330 0.9288 -0.8908 35 1 3.9337 0.9285 0.8891 36 1 3.7455 3.3882 0.9072 37 1 3.6883 3.4092 -0.8717 38 1 5.6101 1.3012 1.3314 39 1 7.1787 2.0748 1.0009 40 1 6.6216 1.8437 3.6970 41 1 6.4923 3.6038 7.8509 42 1 5.5989 1.2356 -1.3469 43 1 7.1220 2.1491 -1.2282 44 1 3.7693 2.0441 -2.7253 45 1 3.1226 3.3744 -4.6934 46 1 6.7752 5.5656 -4.4083 47 1 7.4240 4.2251 -2.4479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066492576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:23 Heat of formation + Delta-G solvation = -81.675332 kcal Electronic energy + Delta-G solvation = -27240.018919 eV Core-core repulsion = 23336.048318 eV Total energy + Delta-G solvation = -3903.970601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.87305 -40.92844 -39.96740 -38.33092 -36.18417 -35.82076 -33.71269 -32.53795 -32.11786 -31.59079 -28.95278 -27.32283 -26.37765 -24.54332 -23.93593 -22.98692 -21.96253 -21.48586 -20.97270 -19.93770 -18.60664 -17.75142 -17.42163 -17.11334 -16.88116 -16.57207 -16.45122 -16.35795 -15.89626 -15.33761 -15.24751 -14.99880 -14.67107 -14.55907 -14.41310 -14.29826 -14.23932 -14.08417 -13.90730 -13.20250 -13.02607 -12.98389 -12.82356 -12.59998 -12.52252 -12.39442 -12.28239 -11.96470 -11.91602 -11.83194 -11.71202 -11.63763 -11.45927 -11.24022 -10.35510 -10.19904 -9.98807 -9.56942 -9.00185 -8.38477 -5.98684 0.16990 0.34231 1.30803 1.37103 1.45411 2.03221 2.24996 2.47689 2.90266 3.18152 3.33574 3.36988 3.77747 3.81357 3.89378 3.97642 4.02668 4.16302 4.22046 4.25858 4.34267 4.36561 4.43870 4.47916 4.55755 4.61419 4.68036 4.73199 4.79412 4.92628 5.01755 5.03735 5.09155 5.12442 5.15203 5.20279 5.24571 5.30625 5.38651 5.44396 5.51866 5.56592 5.63113 5.93509 5.98000 6.09040 6.24171 6.64369 6.93432 7.45371 8.04559 8.79600 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011119 B = 0.003342 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.580994 B = 8375.293382 C =10136.972055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.114 4.114 4 C -0.151 4.151 5 C 0.059 3.941 6 N -0.529 5.529 7 C 0.051 3.949 8 C 0.454 3.546 9 O -0.606 6.606 10 N -0.595 5.595 11 C -0.324 4.324 12 H 0.053 0.947 13 C -0.017 4.017 14 N -0.938 5.938 15 Si 0.964 3.036 16 H -0.257 1.257 17 H -0.277 1.277 18 H -0.230 1.230 19 C 0.090 3.910 20 C -0.088 4.088 21 C -0.084 4.084 22 C -0.158 4.158 23 C 0.073 3.927 24 F -0.152 7.152 25 C -0.162 4.162 26 C -0.078 4.078 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.122 0.878 40 H 0.388 0.612 41 H 0.278 0.722 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.144 0.856 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 -13.353 -22.662 26.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.152 4.152 4 C -0.190 4.190 5 C -0.069 4.069 6 N -0.252 5.252 7 C -0.080 4.080 8 C 0.241 3.759 9 O -0.490 6.490 10 N -0.238 5.238 11 C -0.453 4.453 12 H 0.071 0.929 13 C -0.215 4.215 14 N -0.579 5.579 15 Si 0.784 3.216 16 H -0.181 1.181 17 H -0.203 1.203 18 H -0.153 1.153 19 C -0.036 4.036 20 C -0.088 4.088 21 C -0.102 4.102 22 C -0.176 4.176 23 C 0.054 3.946 24 F -0.130 7.130 25 C -0.180 4.180 26 C -0.096 4.096 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.140 0.860 40 H 0.224 0.776 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.117 0.883 44 H 0.166 0.834 45 H 0.167 0.833 46 H 0.162 0.838 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.895 -12.032 -22.603 25.769 hybrid contribution -0.095 -0.574 0.828 1.012 sum -2.990 -12.606 -21.776 25.338 Atomic orbital electron populations 1.21785 0.95720 1.01941 1.01672 1.21506 0.96046 0.96000 1.02234 1.21503 0.94578 0.97494 1.01669 1.22230 0.96678 0.97496 1.02607 1.22139 0.86727 0.96255 1.01784 1.61682 1.08080 1.54860 1.00593 1.21893 1.03030 0.94883 0.88207 1.20985 0.81627 0.88820 0.84445 1.90548 1.48924 1.23857 1.85647 1.42045 1.59551 1.16066 1.06122 1.18972 1.41708 0.98506 0.86138 0.92934 1.26106 0.97591 1.03904 0.93911 1.69817 1.48864 1.39247 1.00017 0.85373 0.79550 0.77228 0.79415 1.18106 1.20263 1.15333 1.21210 1.01691 0.95117 0.85622 1.19936 0.94943 0.97511 0.96456 1.21170 0.95773 0.99314 0.93956 1.21317 1.00922 0.96507 0.98872 1.17993 0.95940 0.93874 0.86767 1.91460 1.92128 1.76084 1.53374 1.21328 0.96311 1.02502 0.97898 1.21115 1.00570 0.93580 0.94343 0.93738 0.92221 0.92019 0.90662 0.92749 0.94087 0.91091 0.89290 0.92494 0.94011 0.90406 0.89919 0.86004 0.77617 0.91283 0.91031 0.88277 0.83388 0.83273 0.83831 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.91 71.98 0.71 -1.66 16 2 C -0.12 -1.95 5.93 30.59 0.18 -1.77 16 3 C -0.11 -2.24 5.21 30.60 0.16 -2.08 16 4 C -0.15 -3.08 4.36 30.60 0.13 -2.95 16 5 C 0.06 1.65 4.63 86.30 0.40 2.05 16 6 N -0.53 -14.60 4.30 -905.38 -3.89 -18.49 16 7 C 0.05 1.46 5.33 85.56 0.46 1.92 16 8 C 0.45 20.14 7.38 87.66 0.65 20.78 16 9 O -0.61 -33.59 14.69 -3.07 -0.05 -33.63 16 10 N -0.60 -27.76 5.09 -306.98 -1.56 -29.33 16 11 C -0.32 -18.99 10.16 84.04 0.85 -18.14 16 12 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 13 C -0.02 -0.95 5.50 84.92 0.47 -0.48 16 14 N -0.94 -56.96 13.96 21.66 0.30 -56.66 16 15 Si 0.96 38.58 27.74 68.60 1.90 40.49 16 16 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 17 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 18 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 19 C 0.09 1.66 4.88 85.56 0.42 2.08 16 20 C -0.09 -1.71 4.89 -19.86 -0.10 -1.80 16 21 C -0.08 -1.45 7.93 22.26 0.18 -1.28 16 22 C -0.16 -2.88 10.03 22.31 0.22 -2.66 16 23 C 0.07 1.57 7.30 22.38 0.16 1.73 16 24 F -0.15 -3.49 17.27 44.97 0.78 -2.71 16 25 C -0.16 -3.29 10.03 22.31 0.22 -3.07 16 26 C -0.08 -1.57 9.70 22.26 0.22 -1.35 16 27 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.33 5.34 -2.39 -0.01 1.32 16 35 H 0.06 1.27 6.34 -2.39 -0.02 1.26 16 36 H 0.04 1.60 6.56 -2.38 -0.02 1.58 16 37 H 0.08 2.07 6.09 -2.39 -0.01 2.06 16 38 H 0.08 1.97 5.93 -2.39 -0.01 1.95 16 39 H 0.12 2.78 7.81 -2.39 -0.02 2.76 16 40 H 0.39 14.88 5.76 -92.71 -0.53 14.35 16 41 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.07 1.01 5.93 -2.39 -0.01 1.00 16 43 H 0.10 1.55 7.81 -2.39 -0.02 1.53 16 44 H 0.15 1.97 6.90 -2.91 -0.02 1.95 16 45 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 46 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 47 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -76.98 378.27 3.20 -73.78 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.39 Total: 35.22 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 5.34 Total: -8.67 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -5.15 Total: -104.48 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.05 Total: -33.63 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 1.90 Total: 40.49 kcal Total: -76.98 3.20 -73.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066492576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.897 kcal (2) G-P(sol) polarization free energy of solvation -76.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds