Wall clock time and date at job start Tue Mar 31 2020 12:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 6 6 N 1.46500 * 109.46998 * 299.99786 * 4 2 1 7 7 C 1.34773 * 119.99910 * 84.99768 * 6 4 2 8 8 O 1.21277 * 120.00157 * 0.02562 * 7 6 4 9 9 C 1.50699 * 119.99928 * 180.02562 * 7 6 4 10 10 N 1.46899 * 109.47268 * 180.02562 * 9 7 6 11 11 C 1.46894 * 111.00078 * 66.04318 * 10 9 7 12 12 C 1.46901 * 111.00096 * 189.99864 * 10 9 7 13 13 C 1.50703 * 109.47042 * 169.99616 * 12 10 9 14 14 H 1.07994 * 120.00013 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99712 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00064 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99871 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47346 * 59.99263 * 17 15 13 19 19 H 1.48499 * 109.47621 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46744 * 299.99935 * 17 15 13 21 21 C 1.50703 * 109.47126 * 179.97438 * 4 2 1 22 22 C 1.38244 * 119.97361 * 79.72439 * 21 4 2 23 23 C 1.38201 * 120.02533 * 179.72682 * 22 21 4 24 24 C 1.38461 * 119.97175 * 0.52204 * 23 22 21 25 25 F 1.35103 * 120.02119 * 179.72834 * 24 23 22 26 26 C 1.38454 * 119.94761 * 359.75396 * 24 23 22 27 27 C 1.38198 * 119.97874 * 359.97438 * 26 24 23 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 0.97003 * 119.99995 * 265.00643 * 6 4 2 36 36 H 1.09008 * 109.47127 * 300.00173 * 9 7 6 37 37 H 1.08994 * 109.47297 * 60.00002 * 9 7 6 38 38 H 1.09005 * 109.47250 * 60.00602 * 11 10 9 39 39 H 1.08999 * 109.47426 * 179.97438 * 11 10 9 40 40 H 1.09000 * 109.47566 * 300.00605 * 11 10 9 41 41 H 1.08997 * 109.47199 * 289.99694 * 12 10 9 42 42 H 1.08999 * 109.47200 * 50.00115 * 12 10 9 43 43 H 0.97005 * 119.99580 * 180.02562 * 16 15 13 44 44 H 1.08005 * 119.98781 * 359.97438 * 22 21 4 45 45 H 1.07996 * 120.01275 * 180.29821 * 23 22 21 46 46 H 1.08001 * 120.01079 * 179.97438 * 26 24 23 47 47 H 1.07995 * 119.98818 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -1.7489 1.2492 6 7 1.5517 -0.0308 2.4454 7 6 0.3297 -0.3165 2.9369 8 8 -0.3655 -1.1457 2.3892 9 6 -0.1728 0.3942 4.1670 10 7 -1.5192 -0.0915 4.4975 11 6 -1.4854 -1.5040 4.8994 12 6 -2.1367 0.7380 5.5409 13 6 -3.5915 0.3699 5.6798 14 1 -4.0148 -0.4032 5.0558 15 6 -4.3819 1.0202 6.6036 16 7 -3.8662 1.9613 7.3638 17 14 -6.1849 0.5634 6.7764 18 1 -6.2991 -0.8690 7.1514 19 1 -6.8093 1.4020 7.8309 20 1 -6.8798 0.7936 5.4842 21 6 3.5470 -0.7219 1.2489 22 6 4.2382 0.4052 1.6529 23 6 5.6202 0.4039 1.6584 24 6 6.3125 -0.7231 1.2488 25 9 7.6636 -0.7235 1.2486 26 6 5.6192 -1.8493 0.8391 27 6 4.2372 -1.8477 0.8397 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 2.1078 0.6323 2.8837 36 1 0.4997 0.1957 5.0016 37 1 -0.2096 1.4669 3.9773 38 1 -0.8480 -1.6171 5.7764 39 1 -2.4949 -1.8379 5.1390 40 1 -1.0880 -2.1050 4.0815 41 1 -1.6268 0.5683 6.4892 42 1 -2.0527 1.7895 5.2662 43 1 -4.4223 2.4185 8.0140 44 1 3.6979 1.2857 1.9680 45 1 6.1599 1.2828 1.9785 46 1 6.1582 -2.7288 0.5190 47 1 3.6962 -2.7259 0.5198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083218744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:52 Heat of formation + Delta-G solvation = -71.112456 kcal Electronic energy + Delta-G solvation = -27378.666330 eV Core-core repulsion = 23475.153770 eV Total energy + Delta-G solvation = -3903.512561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.89126 -41.56253 -40.03675 -38.01112 -36.89679 -34.61086 -34.08313 -32.22072 -31.83485 -29.98176 -28.73286 -27.96843 -26.94183 -25.78961 -24.07162 -22.79921 -22.61253 -21.34732 -20.54732 -18.87200 -18.56290 -17.95088 -17.65048 -17.03908 -16.91555 -16.61073 -16.51373 -16.09154 -15.92319 -15.50202 -15.40780 -14.82075 -14.69523 -14.68554 -14.39707 -14.19829 -14.00849 -13.73712 -13.52834 -13.31519 -13.12722 -12.95207 -12.76577 -12.66344 -12.57320 -12.51763 -12.39484 -12.13736 -11.94544 -11.88671 -11.67314 -11.63093 -11.42378 -10.62135 -10.57346 -10.06056 -9.96464 -9.54439 -8.98332 -8.20001 -6.28751 0.08454 0.26587 1.41726 1.44525 1.52515 1.75948 2.12779 2.42438 2.60891 3.12691 3.27959 3.42432 3.52443 3.76124 3.91029 3.95869 4.04092 4.09951 4.24822 4.32946 4.35721 4.41831 4.45391 4.60752 4.70808 4.72442 4.76479 4.85341 4.93701 4.96888 5.06803 5.09008 5.14376 5.15806 5.17629 5.20534 5.25574 5.29998 5.40781 5.42464 5.53609 5.65349 5.67992 5.89011 6.03686 6.30411 6.47868 6.71585 6.85948 7.39155 7.41209 8.90645 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.002455 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.371870 B =11403.023039 C =11781.067458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 C -0.150 4.150 4 C 0.197 3.803 5 H 0.083 0.917 6 N -0.714 5.714 7 C 0.525 3.475 8 O -0.545 6.545 9 C 0.032 3.968 10 N -0.537 5.537 11 C 0.044 3.956 12 C 0.209 3.791 13 C -0.525 4.525 14 H 0.057 0.943 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.271 1.271 21 C -0.099 4.099 22 C -0.082 4.082 23 C -0.152 4.152 24 C 0.079 3.921 25 F -0.150 7.150 26 C -0.152 4.152 27 C -0.081 4.081 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.410 0.590 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.010 0.990 39 H 0.052 0.948 40 H 0.076 0.924 41 H -0.030 1.030 42 H 0.013 0.987 43 H 0.265 0.735 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.150 0.850 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.008 -3.367 -15.084 26.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 C -0.207 4.207 4 C 0.093 3.907 5 H 0.101 0.899 6 N -0.368 5.368 7 C 0.312 3.688 8 O -0.421 6.421 9 C -0.099 4.099 10 N -0.262 5.262 11 C -0.105 4.105 12 C 0.083 3.917 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.193 4.193 16 N -0.572 5.572 17 Si 0.790 3.210 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.196 1.196 21 C -0.100 4.100 22 C -0.100 4.100 23 C -0.170 4.170 24 C 0.060 3.940 25 F -0.129 7.129 26 C -0.171 4.171 27 C -0.099 4.099 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.247 0.753 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.029 0.971 39 H 0.070 0.930 40 H 0.095 0.905 41 H -0.013 1.013 42 H 0.031 0.969 43 H 0.074 0.926 44 H 0.168 0.832 45 H 0.169 0.831 46 H 0.168 0.832 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 21.217 -3.805 -15.754 26.698 hybrid contribution -0.032 0.230 1.353 1.373 sum 21.185 -3.574 -14.400 25.864 Atomic orbital electron populations 1.21796 0.95521 1.01237 1.00653 1.21451 0.95128 0.97641 0.97161 1.21977 1.01715 0.94887 1.02131 1.19760 0.88918 0.97230 0.84806 0.89856 1.45927 1.17143 1.44091 1.29649 1.20463 0.81150 0.82226 0.84987 1.90650 1.56540 1.34468 1.60467 1.22043 0.91398 1.00897 0.95594 1.61696 1.17596 1.03342 1.43536 1.22240 1.00833 0.89403 0.97994 1.19428 0.93674 0.91965 0.86614 1.21409 0.95433 1.20280 1.19251 0.92525 1.25828 1.03385 0.94907 0.95184 1.70050 1.37994 1.25439 1.23683 0.85495 0.79183 0.78379 0.77920 1.19469 1.20522 1.19583 1.19907 0.94202 0.94871 1.01021 1.21044 0.93025 0.98288 0.97626 1.21333 0.94998 0.98304 1.02389 1.18028 0.76615 0.96552 1.02814 1.91485 1.29812 1.97118 1.94478 1.21316 0.94940 0.98295 1.02564 1.21060 0.93088 0.98229 0.97511 0.92923 0.94397 0.93751 0.89312 0.92704 0.90874 0.92473 0.75320 0.91514 0.87635 0.97149 0.92953 0.90530 1.01266 0.96926 0.92601 0.83246 0.83072 0.83224 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 7.72 71.98 0.56 -2.75 16 2 C -0.09 -1.66 2.79 -10.79 -0.03 -1.69 16 3 C -0.15 -2.19 7.94 71.98 0.57 -1.62 16 4 C 0.20 3.53 2.28 44.25 0.10 3.63 16 5 H 0.08 1.79 7.44 -2.39 -0.02 1.77 16 6 N -0.71 -14.28 4.15 -446.10 -1.85 -16.13 16 7 C 0.53 15.51 5.91 87.66 0.52 16.03 16 8 O -0.54 -19.86 11.44 -3.02 -0.03 -19.89 16 9 C 0.03 1.07 5.45 85.56 0.47 1.54 16 10 N -0.54 -23.96 4.49 -931.66 -4.18 -28.14 16 11 C 0.04 1.84 9.03 127.69 1.15 2.99 16 12 C 0.21 11.09 4.72 85.56 0.40 11.49 16 13 C -0.53 -30.34 8.46 25.60 0.22 -30.12 16 14 H 0.06 3.29 7.12 -2.91 -0.02 3.27 16 15 C 0.01 0.30 5.46 84.66 0.46 0.76 16 16 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 17 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 21 C -0.10 -1.39 4.71 -19.86 -0.09 -1.49 16 22 C -0.08 -0.98 6.83 22.26 0.15 -0.83 16 23 C -0.15 -1.92 10.03 22.31 0.22 -1.70 16 24 C 0.08 1.20 7.30 22.37 0.16 1.37 16 25 F -0.15 -2.66 17.27 44.97 0.78 -1.88 16 26 C -0.15 -2.02 10.03 22.31 0.22 -1.79 16 27 C -0.08 -1.05 9.67 22.26 0.22 -0.83 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.04 1.12 5.78 -2.39 -0.01 1.10 16 30 H 0.04 1.24 7.53 -2.38 -0.02 1.23 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 0.84 7.60 -2.39 -0.02 0.82 16 33 H 0.07 0.86 5.58 -2.39 -0.01 0.85 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.41 6.03 6.89 -92.71 -0.64 5.39 16 36 H 0.07 2.02 8.12 -2.38 -0.02 2.00 16 37 H 0.11 3.27 7.93 -2.39 -0.02 3.26 16 38 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.05 2.39 6.76 -2.39 -0.02 2.38 16 40 H 0.08 3.06 5.88 -2.39 -0.01 3.05 16 41 H -0.03 -1.71 8.12 -2.39 -0.02 -1.73 16 42 H 0.01 0.70 7.93 -2.39 -0.02 0.68 16 43 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 44 H 0.15 1.29 6.07 -2.91 -0.02 1.27 16 45 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 46 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 47 H 0.15 1.50 8.03 -2.91 -0.02 1.47 16 Total: -1.00 -69.51 373.58 2.66 -66.86 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.34 Total: 12.60 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 5.30 Total: -5.01 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -5.75 Total: -99.56 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.03 Total: -19.89 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -69.51 2.66 -66.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.257 kcal (2) G-P(sol) polarization free energy of solvation -69.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds