Wall clock time and date at job start Tue Mar 31 2020 13:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.53002 * 109.46637 * 119.99695 * 2 1 3 5 5 C 1.50706 * 109.46931 * 299.99757 * 4 2 1 6 6 H 1.07999 * 120.00193 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99398 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 C 1.52996 * 109.47302 * 239.99782 * 2 1 3 14 14 N 1.46896 * 109.47496 * 60.00217 * 13 2 1 15 15 C 1.46895 * 111.00306 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47239 * 179.97438 * 15 14 13 17 17 H 1.09002 * 110.27549 * 52.91164 * 16 15 14 18 18 C 1.54601 * 110.30814 * 290.71467 * 16 15 14 19 19 C 1.54941 * 102.92139 * 219.12640 * 18 16 15 20 20 N 1.48538 * 103.22575 * 37.41556 * 19 18 16 21 21 C 1.46893 * 110.99790 * 200.27918 * 20 19 18 22 22 C 1.53003 * 109.47390 * 287.39791 * 21 20 19 23 23 F 1.39899 * 109.47088 * 59.99941 * 22 21 20 24 24 F 1.39897 * 109.47446 * 180.02562 * 22 21 20 25 25 F 1.39902 * 109.46477 * 300.00167 * 22 21 20 26 26 C 1.47906 * 105.81747 * 320.79079 * 20 19 18 27 27 H 1.09002 * 109.47508 * 300.00429 * 1 2 3 28 28 H 1.09001 * 109.47109 * 60.00620 * 1 2 3 29 29 H 1.09000 * 109.47437 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46968 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47194 * 299.99323 * 3 2 1 32 32 H 1.09002 * 109.47398 * 59.99503 * 3 2 1 33 33 H 1.09000 * 109.46986 * 180.02562 * 4 2 1 34 34 H 1.08993 * 109.47662 * 60.00092 * 4 2 1 35 35 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46870 * 180.02562 * 13 2 1 37 37 H 1.09004 * 109.47108 * 300.00057 * 13 2 1 38 38 H 1.00907 * 110.99811 * 303.95636 * 14 13 2 39 39 H 1.09001 * 109.46853 * 299.99843 * 15 14 13 40 40 H 1.09002 * 109.47087 * 59.99867 * 15 14 13 41 41 H 1.08999 * 110.72149 * 337.48625 * 18 16 15 42 42 H 1.08998 * 110.72205 * 100.77039 * 18 16 15 43 43 H 1.09003 * 110.66303 * 278.98229 * 19 18 16 44 44 H 1.09001 * 110.80926 * 155.91766 * 19 18 16 45 45 H 1.09004 * 109.47140 * 47.39812 * 21 20 19 46 46 H 1.09000 * 109.47327 * 167.39328 * 21 20 19 47 47 H 1.08999 * 109.91540 * 265.97432 * 26 20 19 48 48 H 1.09004 * 109.91114 * 144.68565 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5375 -0.0106 2.4797 6 1 0.9163 0.8673 2.3806 7 6 1.8710 -0.4814 3.7320 8 7 1.4321 0.1384 4.8057 9 14 2.9460 -1.9994 3.9036 10 1 2.0883 -3.2108 3.9491 11 1 3.8664 -2.0879 2.7416 12 1 3.7378 -1.9061 5.1564 13 6 2.0400 -0.7213 -1.2492 14 7 1.5505 -0.0289 -2.4487 15 6 2.0220 -0.6947 -3.6702 16 6 1.4925 0.0531 -4.8955 17 1 1.7420 1.1121 -4.8287 18 6 -0.0373 -0.1333 -5.0181 19 6 -0.2460 -0.2896 -6.5454 20 7 0.9387 -1.0781 -6.9713 21 6 1.1807 -0.9276 -8.4124 22 6 0.1126 -1.6971 -9.1921 23 9 -1.1520 -1.1890 -8.8761 24 9 0.3434 -1.5543 -10.5645 25 9 0.1700 -3.0520 -8.8484 26 6 2.0762 -0.5532 -6.1851 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 3.1299 -0.7208 1.2496 34 1 1.6766 -1.7488 1.2494 35 1 1.6664 -0.1930 5.6868 36 1 3.1300 -0.7216 -1.2489 37 1 1.6767 -1.7490 -1.2491 38 1 0.5439 0.0412 -2.4402 39 1 3.1119 -0.6941 -3.6867 40 1 1.6590 -1.7223 -3.6872 41 1 -0.3599 -1.0310 -4.4908 42 1 -0.5640 0.7450 -4.6448 43 1 -0.2556 0.6847 -7.0341 44 1 -1.1665 -0.8337 -6.7568 45 1 1.1361 0.1281 -8.6800 46 1 2.1660 -1.3234 -8.6586 47 1 2.5974 0.2164 -6.7545 48 1 2.7616 -1.3637 -5.9373 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123181665.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:54 Heat of formation + Delta-G solvation = -165.860873 kcal Electronic energy + Delta-G solvation = -27881.077386 eV Core-core repulsion = 23555.059791 eV Total energy + Delta-G solvation = -4326.017596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.43219 -48.00297 -47.85653 -39.70501 -37.71408 -35.12406 -32.87503 -31.92736 -29.72501 -28.70973 -27.59163 -26.37941 -25.65291 -23.78442 -23.49366 -21.94467 -21.51233 -20.39414 -18.91496 -18.80018 -17.97479 -17.85258 -16.80171 -16.23005 -16.01198 -15.25531 -14.97347 -14.83418 -14.66215 -14.54385 -14.35592 -14.14879 -14.07361 -14.01836 -13.87705 -13.62863 -13.33702 -13.06950 -12.84449 -12.69971 -12.31913 -12.20903 -12.11461 -11.84532 -11.74708 -11.35896 -11.09896 -11.05213 -10.88058 -10.85340 -10.78819 -10.48734 -10.32077 -9.81102 -9.66889 -9.28390 -9.13023 -8.89713 -8.49247 -8.17429 -5.99574 -3.95629 2.30126 3.10572 3.32423 3.40251 3.41144 3.43743 3.62118 3.98942 4.13057 4.30059 4.36396 4.48720 4.60148 4.70570 4.82905 4.85064 5.10566 5.19601 5.25566 5.33477 5.46813 5.52606 5.57050 5.62418 5.66581 5.76375 5.85495 5.87922 5.93685 6.15295 6.21842 6.25276 6.31280 6.41821 6.58864 6.69039 6.79832 7.07768 7.13855 7.18692 7.29353 7.33497 7.46977 7.62221 7.86015 8.60258 9.06339 9.63603 11.13498 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.032010 B = 0.002013 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.511075 B =13902.834881 C =14096.789708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.049 4.049 3 C -0.117 4.117 4 C -0.005 4.005 5 C -0.506 4.506 6 H 0.078 0.922 7 C 0.063 3.937 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.267 1.267 12 H -0.289 1.289 13 C 0.068 3.932 14 N -0.686 5.686 15 C 0.067 3.933 16 C -0.095 4.095 17 H 0.088 0.912 18 C -0.120 4.120 19 C 0.025 3.975 20 N -0.513 5.513 21 C 0.000 4.000 22 C 0.459 3.541 23 F -0.183 7.183 24 F -0.186 7.186 25 F -0.173 7.173 26 C 0.045 3.955 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.014 0.986 34 H 0.008 0.992 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.023 0.977 38 H 0.339 0.661 39 H 0.070 0.930 40 H 0.031 0.969 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.119 0.881 47 H 0.052 0.948 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 -1.167 -29.855 29.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.049 4.049 3 C -0.175 4.175 4 C -0.043 4.043 5 C -0.544 4.544 6 H 0.096 0.904 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.191 1.191 12 H -0.216 1.216 13 C -0.061 4.061 14 N -0.318 5.318 15 C -0.062 4.062 16 C -0.115 4.115 17 H 0.107 0.893 18 C -0.158 4.158 19 C -0.103 4.103 20 N -0.237 5.237 21 C -0.130 4.130 22 C 0.404 3.596 23 F -0.164 7.164 24 F -0.167 7.167 25 F -0.155 7.155 26 C -0.083 4.083 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.159 0.841 39 H 0.088 0.912 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.110 0.890 45 H 0.101 0.899 46 H 0.137 0.863 47 H 0.070 0.930 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.451 -1.288 -29.585 29.617 hybrid contribution 0.025 -1.007 -0.110 1.013 sum -0.426 -2.295 -29.695 29.787 Atomic orbital electron populations 1.21785 0.95649 1.00454 1.00917 1.20413 0.95041 0.96157 0.93283 1.21610 0.99655 0.95534 1.00670 1.19635 0.96030 0.95251 0.93353 1.21137 1.31418 1.13198 0.88678 0.90429 1.25028 0.95834 0.96773 0.96052 1.69912 1.46166 1.40630 0.97816 0.86841 0.81313 0.83972 0.77500 1.20522 1.19134 1.21567 1.22125 0.99717 0.94676 0.89584 1.60543 1.16505 1.53680 1.01108 1.21985 1.00084 0.95038 0.89117 1.22038 0.95071 1.00896 0.93456 0.89327 1.22600 0.95666 1.02807 0.94745 1.23575 0.94180 0.96241 0.96258 1.64704 1.05089 1.53154 1.00780 1.23401 0.98162 1.00371 0.91095 1.20426 0.82565 0.78941 0.77682 1.93168 1.43931 1.86973 1.92378 1.93188 1.94492 1.95681 1.33373 1.93214 1.96372 1.34033 1.91850 1.22924 0.92738 0.98930 0.93663 0.91156 0.94631 0.94154 0.94251 0.93695 0.92154 0.96724 0.97401 0.92906 0.91638 0.95920 0.84143 0.91190 0.95110 0.90520 0.90203 0.93024 0.88997 0.89926 0.86289 0.92953 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.89 37.16 0.29 -2.06 16 2 C -0.05 -0.92 0.60 -154.51 -0.09 -1.01 16 3 C -0.12 -2.21 8.06 37.16 0.30 -1.91 16 4 C 0.00 -0.11 3.11 -27.88 -0.09 -0.20 16 5 C -0.51 -13.89 8.20 -34.44 -0.28 -14.18 16 6 H 0.08 2.27 5.92 -52.49 -0.31 1.96 16 7 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 8 N -0.91 -27.70 13.96 55.43 0.77 -26.93 16 9 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 C 0.07 1.07 4.65 -3.83 -0.02 1.06 16 14 N -0.69 -8.88 5.71 -113.78 -0.65 -9.53 16 15 C 0.07 0.71 4.83 -3.83 -0.02 0.69 16 16 C -0.10 -0.79 3.23 -89.26 -0.29 -1.08 16 17 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 18 C -0.12 -0.98 5.89 -24.87 -0.15 -1.13 16 19 C 0.02 0.19 5.41 -1.89 -0.01 0.18 16 20 N -0.51 -3.94 5.17 -230.44 -1.19 -5.13 16 21 C 0.00 0.00 4.83 -3.83 -0.02 -0.02 16 22 C 0.46 3.56 3.28 37.16 0.12 3.68 16 23 F -0.18 -1.59 14.67 2.25 0.03 -1.55 16 24 F -0.19 -1.47 17.32 2.25 0.04 -1.43 16 25 F -0.17 -1.67 17.24 2.25 0.04 -1.63 16 26 C 0.04 0.32 6.32 -2.75 -0.02 0.30 16 27 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 28 H 0.03 0.54 6.57 -51.93 -0.34 0.19 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 32 H 0.06 1.27 6.62 -51.93 -0.34 0.92 16 33 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 34 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.34 4.25 6.09 -39.29 -0.24 4.01 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.03 0.34 7.99 -51.93 -0.42 -0.07 16 41 H 0.08 0.71 7.76 -51.93 -0.40 0.30 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.35 7.81 -51.93 -0.41 -0.06 16 44 H 0.09 0.75 6.73 -51.93 -0.35 0.40 16 45 H 0.08 0.37 7.83 -51.93 -0.41 -0.04 16 46 H 0.12 0.52 8.08 -51.93 -0.42 0.10 16 47 H 0.05 0.30 7.77 -51.93 -0.40 -0.10 16 48 H 0.09 0.64 7.68 -51.93 -0.40 0.24 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -29.92 375.21 -8.40 -38.32 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -8.07 Total: -0.91 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -0.36 Total: -13.94 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: -1.07 Total: -41.59 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.11 Total: -4.61 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.92 -8.40 -38.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123181665.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.543 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds