Wall clock time and date at job start Tue Mar 31 2020 13:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47142 * 2 1 4 4 C 1.36942 * 120.00119 * 272.14828 * 3 2 1 5 5 H 1.08005 * 119.99823 * 8.56116 * 4 3 2 6 6 C 1.38807 * 119.99887 * 188.56675 * 4 3 2 7 7 N 1.31614 * 120.00345 * 24.80023 * 6 4 3 8 8 Si 1.86805 * 119.99676 * 204.79601 * 6 4 3 9 9 H 1.48498 * 109.47223 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47023 * 119.99920 * 8 6 4 11 11 H 1.48500 * 109.47295 * 240.00007 * 8 6 4 12 12 C 1.46494 * 120.00370 * 92.14300 * 3 2 1 13 13 C 1.50703 * 109.47339 * 89.99791 * 12 3 2 14 14 O 1.21279 * 119.99463 * 0.02562 * 13 12 3 15 15 N 1.34772 * 120.00397 * 180.02562 * 13 12 3 16 16 C 1.46497 * 120.00072 * 180.02562 * 15 13 12 17 17 H 1.09003 * 109.47295 * 34.99988 * 16 15 13 18 18 C 1.50700 * 109.47124 * 154.99584 * 16 15 13 19 19 C 1.38242 * 119.97534 * 219.99983 * 18 16 15 20 20 C 1.38197 * 120.02722 * 180.02562 * 19 18 16 21 21 C 1.38459 * 119.97629 * 0.23140 * 20 19 18 22 22 F 1.35101 * 120.03031 * 179.72813 * 21 20 19 23 23 C 1.38468 * 119.94256 * 359.49024 * 21 20 19 24 24 C 1.38196 * 119.97245 * 0.53337 * 23 21 20 25 25 C 1.52998 * 109.47385 * 274.99669 * 16 15 13 26 26 C 1.52996 * 109.47481 * 179.97438 * 25 16 15 27 27 C 1.52996 * 109.46908 * 300.00464 * 25 16 15 28 28 H 1.09001 * 109.47086 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46893 * 299.99671 * 1 2 3 30 30 H 1.08993 * 109.47249 * 59.99829 * 1 2 3 31 31 H 1.08996 * 109.46835 * 240.00314 * 2 1 3 32 32 H 1.08993 * 109.47249 * 120.00171 * 2 1 3 33 33 H 0.97000 * 120.00259 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.47323 * 330.00567 * 12 3 2 35 35 H 1.08997 * 109.47766 * 210.00367 * 12 3 2 36 36 H 0.97005 * 119.99925 * 359.97438 * 15 13 12 37 37 H 1.08005 * 119.98625 * 359.97438 * 19 18 16 38 38 H 1.08006 * 120.01649 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.01138 * 180.25381 * 23 21 20 40 40 H 1.08000 * 119.98370 * 179.74544 * 24 23 21 41 41 H 1.08999 * 109.46926 * 59.99711 * 25 16 15 42 42 H 1.08996 * 109.47194 * 180.02562 * 26 25 16 43 43 H 1.08999 * 109.47083 * 299.99952 * 26 25 16 44 44 H 1.08999 * 109.47193 * 59.99976 * 26 25 16 45 45 H 1.09000 * 109.47720 * 59.99527 * 27 25 16 46 46 H 1.09004 * 109.46915 * 179.97438 * 27 25 16 47 47 H 1.09006 * 109.47101 * 299.99482 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2047 2.0416 -1.1851 5 1 1.8636 1.5990 -2.1094 6 6 2.8320 3.2798 -1.1985 7 7 3.6604 3.6084 -0.2299 8 14 2.5005 4.4797 -2.5913 9 1 1.5381 3.8751 -3.5470 10 1 1.9271 5.7333 -2.0387 11 1 3.7721 4.7850 -3.2949 12 6 2.3073 2.0561 1.2677 13 6 3.7450 1.8142 1.6494 14 8 4.4581 1.1444 0.9327 15 7 4.2382 2.3421 2.7871 16 6 5.6359 2.1074 3.1578 17 1 6.2501 2.0757 2.2578 18 6 6.1126 3.2227 4.0521 19 6 7.3873 3.7349 3.8978 20 6 7.8257 4.7574 4.7177 21 6 6.9893 5.2656 5.6972 22 9 7.4187 6.2614 6.5029 23 6 5.7107 4.7557 5.8470 24 6 5.2748 3.7329 5.0262 25 6 5.7498 0.7744 3.9001 26 6 7.2097 0.5289 4.2867 27 6 4.8877 0.8189 5.1633 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.0985 4.4737 -0.2391 34 1 1.6537 1.6623 2.0462 35 1 2.1360 3.1268 1.1568 36 1 3.6679 2.8781 3.3602 37 1 8.0412 3.3353 3.1367 38 1 8.8218 5.1572 4.5973 39 1 5.0560 5.1540 6.6080 40 1 4.2790 3.3322 5.1456 41 1 5.4051 -0.0323 3.2533 42 1 7.2908 -0.4209 4.8151 43 1 7.8234 0.4971 3.3865 44 1 7.5548 1.3356 4.9334 45 1 3.8477 0.9936 4.8875 46 1 4.9685 -0.1309 5.6919 47 1 5.2324 1.6257 5.8102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299543746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:22 Heat of formation + Delta-G solvation = -34.922916 kcal Electronic energy + Delta-G solvation = -28397.048475 eV Core-core repulsion = 24495.105210 eV Total energy + Delta-G solvation = -3901.943264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.90890 -40.00556 -38.09099 -36.20748 -35.04334 -32.44994 -31.83661 -31.25278 -30.33317 -29.16259 -27.08798 -26.99526 -25.11923 -23.52181 -23.00699 -21.93539 -20.73073 -19.73295 -18.91074 -17.74770 -17.01628 -16.34064 -16.07380 -15.65066 -15.33783 -15.15950 -14.91616 -14.55035 -14.10646 -13.79982 -13.61921 -13.61037 -13.53737 -13.13074 -12.93542 -12.65107 -12.35313 -12.24175 -12.10906 -11.97490 -11.70865 -11.61141 -11.26605 -11.08978 -11.01767 -10.88779 -10.75538 -10.72919 -10.37747 -10.32515 -10.11095 -9.85847 -9.77011 -9.09439 -8.76595 -8.54696 -8.18781 -8.01405 -6.87734 -5.78429 -3.03033 1.13117 1.21295 3.40453 3.49482 3.51378 3.55276 4.15340 4.23638 4.32120 4.57638 4.70685 4.75422 4.85040 5.13995 5.25347 5.27366 5.32531 5.36832 5.38550 5.50680 5.73660 5.78005 5.87223 5.93305 5.96655 5.99240 6.04542 6.08859 6.13288 6.20102 6.25485 6.28902 6.32181 6.35539 6.40827 6.56165 6.58393 6.59672 6.79425 6.85355 6.87536 7.10402 7.21199 7.49150 7.81417 8.28506 8.66946 9.19625 9.75156 9.91888 10.30833 11.31585 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.004023 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.370290 B = 6958.447103 C = 8158.621412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 N -0.575 5.575 4 C -0.241 4.241 5 H 0.076 0.924 6 C -0.002 4.002 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.291 1.291 11 H -0.294 1.294 12 C 0.164 3.836 13 C 0.533 3.467 14 O -0.530 6.530 15 N -0.742 5.742 16 C 0.196 3.804 17 H 0.091 0.909 18 C -0.077 4.077 19 C -0.080 4.080 20 C -0.152 4.152 21 C 0.087 3.913 22 F -0.145 7.145 23 C -0.153 4.153 24 C -0.084 4.084 25 C -0.102 4.102 26 C -0.145 4.145 27 C -0.149 4.149 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.035 0.965 33 H 0.251 0.749 34 H 0.034 0.966 35 H 0.102 0.898 36 H 0.384 0.616 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -1.186 14.565 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.020 3.980 3 N -0.295 5.295 4 C -0.370 4.370 5 H 0.094 0.906 6 C -0.199 4.199 7 N -0.543 5.543 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.218 1.218 11 H -0.222 1.222 12 C 0.033 3.967 13 C 0.319 3.681 14 O -0.404 6.404 15 N -0.397 5.397 16 C 0.090 3.910 17 H 0.109 0.891 18 C -0.078 4.078 19 C -0.098 4.098 20 C -0.171 4.171 21 C 0.068 3.932 22 F -0.124 7.124 23 C -0.172 4.172 24 C -0.102 4.102 25 C -0.121 4.121 26 C -0.203 4.203 27 C -0.206 4.206 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.120 0.880 36 H 0.217 0.783 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.261 -1.535 13.977 14.693 hybrid contribution -0.014 1.360 -0.326 1.399 sum 4.247 -0.174 13.651 14.298 Atomic orbital electron populations 1.22322 0.99601 0.99085 1.01454 1.20702 0.91784 0.86363 0.99157 1.43919 1.74011 1.09476 1.02072 1.19265 1.32195 0.99178 0.86401 0.90566 1.24649 0.97635 0.99503 0.98141 1.69903 1.28082 1.21477 1.34824 0.86262 0.77558 0.81546 0.81736 1.20515 1.21777 1.22186 1.20688 0.89242 1.00087 0.86681 1.22090 0.92174 0.76434 0.77354 1.90498 1.60340 1.39980 1.49552 1.46361 1.10138 1.57138 1.26106 1.19581 0.85944 0.89941 0.95552 0.89081 1.20147 0.94086 0.97205 0.96366 1.20919 0.95692 0.94972 0.98239 1.21088 1.00469 0.99048 0.96487 1.17702 0.94123 0.89141 0.92280 1.91476 1.90184 1.58974 1.71786 1.21084 0.94857 0.98983 1.02227 1.20878 0.99970 0.95141 0.94224 1.21451 0.95560 0.98056 0.97075 1.21828 0.96064 1.01148 1.01255 1.21961 1.00113 1.01287 0.97261 0.94338 0.93790 0.92879 0.93729 0.94702 0.93846 0.94796 0.88044 0.78314 0.84963 0.84984 0.84956 0.84909 0.90262 0.92953 0.92634 0.92684 0.92405 0.93276 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.23 37.16 0.38 -2.51 16 2 C 0.15 3.07 6.39 -4.04 -0.03 3.05 16 3 N -0.58 -14.11 2.02 -174.61 -0.35 -14.46 16 4 C -0.24 -6.56 9.70 -15.06 -0.15 -6.71 16 5 H 0.08 2.07 7.94 -52.48 -0.42 1.65 16 6 C 0.00 -0.06 4.90 -17.43 -0.09 -0.15 16 7 N -0.90 -24.82 8.95 55.49 0.50 -24.32 16 8 Si 0.90 21.75 29.62 -169.99 -5.04 16.72 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 C 0.16 3.67 5.42 -5.20 -0.03 3.64 16 13 C 0.53 11.90 5.86 -10.99 -0.06 11.84 16 14 O -0.53 -14.19 15.82 5.56 0.09 -14.11 16 15 N -0.74 -12.93 4.26 -54.93 -0.23 -13.16 16 16 C 0.20 3.06 2.08 -69.08 -0.14 2.92 16 17 H 0.09 1.74 7.44 -51.93 -0.39 1.35 16 18 C -0.08 -1.02 3.80 -104.62 -0.40 -1.42 16 19 C -0.08 -1.00 8.70 -39.59 -0.34 -1.34 16 20 C -0.15 -1.79 10.03 -39.51 -0.40 -2.18 16 21 C 0.09 1.06 7.30 -39.42 -0.29 0.77 16 22 F -0.15 -1.84 17.27 2.25 0.04 -1.80 16 23 C -0.15 -1.73 10.03 -39.51 -0.40 -2.13 16 24 C -0.08 -0.98 6.83 -39.60 -0.27 -1.26 16 25 C -0.10 -1.40 2.90 -90.62 -0.26 -1.66 16 26 C -0.15 -1.71 8.79 37.16 0.33 -1.38 16 27 C -0.15 -1.72 7.95 37.16 0.30 -1.43 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.96 8.06 -51.93 -0.42 0.55 16 32 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 33 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 35 H 0.10 2.46 6.30 -51.93 -0.33 2.13 16 36 H 0.38 5.77 6.87 -40.82 -0.28 5.49 16 37 H 0.13 1.53 8.04 -52.48 -0.42 1.11 16 38 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.13 1.37 6.08 -52.49 -0.32 1.05 16 41 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.61 6.64 -51.93 -0.34 0.27 16 45 H 0.06 0.68 7.60 -51.93 -0.39 0.29 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.62 5.60 -51.93 -0.29 0.32 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -31.35 378.29 -8.52 -39.87 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.38 Total: 5.51 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.85 Total: 0.05 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.09 Total: -51.94 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.09 Total: -14.11 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.04 Total: 16.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.35 -8.52 -39.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299543746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.949 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds