Wall clock time and date at job start Tue Mar 31 2020 13:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47184 * 2 1 4 4 N 1.46505 * 109.46863 * 179.97438 * 3 2 1 5 5 C 1.46497 * 120.00015 * 270.00094 * 4 3 2 6 6 C 1.50706 * 109.46972 * 269.99750 * 5 4 3 7 7 C 1.38235 * 119.97667 * 269.73096 * 6 5 4 8 8 C 1.38201 * 120.02517 * 179.72953 * 7 6 5 9 9 C 1.38455 * 119.97542 * 0.56254 * 8 7 6 10 10 F 1.35095 * 120.03280 * 179.68124 * 9 8 7 11 11 C 1.38467 * 119.94584 * 359.71040 * 9 8 7 12 12 C 1.38198 * 119.97332 * 359.97438 * 11 9 8 13 13 C 1.34781 * 119.99740 * 90.00475 * 4 3 2 14 14 O 1.21275 * 119.99676 * 180.02562 * 13 4 3 15 15 C 1.50703 * 119.99971 * 359.97438 * 13 4 3 16 16 H 1.09002 * 109.47083 * 320.00492 * 15 13 4 17 17 N 1.46898 * 109.47113 * 200.00293 * 15 13 4 18 18 C 1.53000 * 109.46801 * 80.00207 * 15 13 4 19 19 C 1.52997 * 109.47060 * 184.99876 * 18 15 13 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 15 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99563 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46756 * 59.99920 * 24 22 20 26 26 H 1.48490 * 109.47381 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47117 * 300.00527 * 24 22 20 28 28 H 1.08997 * 109.47378 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46781 * 300.00217 * 1 2 3 30 30 H 1.08998 * 109.46775 * 60.00045 * 1 2 3 31 31 H 1.08997 * 109.46781 * 239.99783 * 2 1 3 32 32 H 1.08998 * 109.46775 * 119.99955 * 2 1 3 33 33 H 1.09007 * 109.47339 * 60.00094 * 3 2 1 34 34 H 1.08998 * 109.47228 * 299.99678 * 3 2 1 35 35 H 1.08994 * 109.47518 * 29.99992 * 5 4 3 36 36 H 1.09001 * 109.46944 * 150.00405 * 5 4 3 37 37 H 1.08005 * 119.99104 * 359.97438 * 7 6 5 38 38 H 1.07999 * 120.01519 * 180.24840 * 8 7 6 39 39 H 1.08000 * 120.01321 * 179.97438 * 11 9 8 40 40 H 1.07999 * 119.98200 * 179.97438 * 12 11 9 41 41 H 1.00899 * 111.00057 * 300.00501 * 17 15 13 42 42 H 1.00902 * 110.99515 * 63.95638 * 17 15 13 43 43 H 1.09002 * 109.47398 * 305.00045 * 18 15 13 44 44 H 1.09001 * 109.47194 * 65.00225 * 18 15 13 45 45 H 1.09002 * 109.47153 * 300.00319 * 19 18 15 46 46 H 1.08998 * 109.47533 * 59.99948 * 19 18 15 47 47 H 0.97002 * 119.99731 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2371 1.4425 1.2696 6 6 4.4882 2.8634 1.7045 7 6 5.6431 3.5126 1.3102 8 6 5.8718 4.8175 1.7038 9 6 4.9491 5.4707 2.5030 10 9 5.1745 6.7441 2.8938 11 6 3.7952 4.8176 2.9021 12 6 3.5656 3.5149 2.5019 13 6 4.1794 1.4423 -1.1664 14 8 5.3922 1.4417 -1.1658 15 6 3.4264 1.4416 -2.4718 16 1 2.5631 0.7809 -2.3929 17 7 4.3092 0.9679 -3.5461 18 6 2.9542 2.8620 -2.7887 19 6 2.0848 2.8414 -4.0475 20 6 1.6202 4.2405 -4.3602 21 1 1.9158 5.0623 -3.7248 22 6 0.8186 4.4716 -5.4579 23 7 0.4590 3.4709 -6.2318 24 14 0.2420 6.2057 -5.8450 25 1 1.4207 7.0803 -6.0710 26 1 -0.6007 6.1859 -7.0675 27 1 -0.5516 6.7297 -4.7045 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.6477 0.9289 2.0291 36 1 5.1895 0.9287 1.1397 37 1 6.3653 3.0012 0.6909 38 1 6.7723 5.3258 1.3922 39 1 3.0749 5.3259 3.5259 40 1 2.6659 3.0052 2.8134 41 1 5.1177 1.5643 -3.6392 42 1 4.5830 0.0089 -3.3925 43 1 2.3721 3.2468 -1.9514 44 1 3.8193 3.5039 -2.9552 45 1 2.6669 2.4566 -4.8849 46 1 1.2197 2.1996 -3.8812 47 1 -0.1047 3.6335 -7.0044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424082014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:27 Heat of formation + Delta-G solvation = -75.587701 kcal Electronic energy + Delta-G solvation = -27788.656699 eV Core-core repulsion = 23884.950077 eV Total energy + Delta-G solvation = -3903.706622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.02322 -40.40601 -38.98163 -36.36833 -35.36135 -33.36718 -32.76864 -31.30302 -31.20352 -30.11395 -27.29676 -26.45194 -25.39240 -23.34474 -23.21989 -21.88564 -21.59854 -20.19147 -19.00423 -17.81534 -17.31976 -16.65078 -16.33769 -16.16394 -15.91105 -15.68090 -15.34492 -14.85405 -14.76520 -14.43484 -14.16646 -13.89005 -13.75897 -13.55183 -13.46605 -13.20433 -12.46026 -12.42416 -12.31007 -12.18098 -12.03419 -11.94521 -11.68816 -11.52252 -11.40543 -11.12261 -10.92289 -10.77002 -10.64693 -10.54979 -10.09466 -9.77631 -9.37353 -9.26344 -9.01984 -8.89015 -8.68471 -8.33502 -8.18628 -5.94271 -3.96395 0.91070 1.08040 2.72002 2.97008 3.35730 3.40395 3.43076 3.55036 4.10661 4.43686 4.50014 4.58672 4.66945 4.73262 4.80423 4.91953 4.94896 5.04907 5.08878 5.24460 5.33286 5.34976 5.41339 5.46819 5.54027 5.59342 5.73701 5.76159 5.81157 5.83350 5.92653 5.95084 6.02241 6.08736 6.21318 6.33278 6.38478 6.51692 6.65543 6.72262 7.06764 7.30600 7.50030 7.74775 7.78856 7.94953 8.12199 8.24896 8.47841 9.11226 9.66859 11.16511 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008978 B = 0.004020 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3118.133760 B = 6962.780955 C = 8346.307076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.140 4.140 3 C 0.097 3.903 4 N -0.607 5.607 5 C 0.154 3.846 6 C -0.115 4.115 7 C -0.065 4.065 8 C -0.155 4.155 9 C 0.099 3.901 10 F -0.142 7.142 11 C -0.157 4.157 12 C -0.078 4.078 13 C 0.487 3.513 14 O -0.552 6.552 15 C 0.077 3.923 16 H 0.099 0.901 17 N -0.807 5.807 18 C -0.096 4.096 19 C 0.033 3.967 20 C -0.523 4.523 21 H 0.051 0.949 22 C 0.060 3.940 23 N -0.892 5.892 24 Si 0.887 3.113 25 H -0.278 1.278 26 H -0.287 1.287 27 H -0.278 1.278 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.347 0.653 42 H 0.333 0.667 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.035 0.965 46 H 0.013 0.987 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.099 -5.983 19.840 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.179 4.179 3 C -0.026 4.026 4 N -0.339 5.339 5 C 0.031 3.969 6 C -0.116 4.116 7 C -0.084 4.084 8 C -0.174 4.174 9 C 0.079 3.921 10 F -0.120 7.120 11 C -0.176 4.176 12 C -0.097 4.097 13 C 0.275 3.725 14 O -0.429 6.429 15 C -0.038 4.038 16 H 0.116 0.884 17 N -0.335 5.335 18 C -0.134 4.134 19 C -0.004 4.004 20 C -0.561 4.561 21 H 0.069 0.931 22 C -0.141 4.141 23 N -0.531 5.531 24 Si 0.715 3.285 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.204 1.204 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.161 0.839 42 H 0.145 0.855 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.031 0.969 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.030 -5.853 19.168 20.663 hybrid contribution 0.307 1.214 0.685 1.427 sum 5.338 -4.639 19.853 21.075 Atomic orbital electron populations 1.21715 0.94743 1.02016 1.02543 1.21945 0.96605 0.96926 1.02410 1.21927 0.78768 0.97248 1.04616 1.48158 1.06885 1.73653 1.05215 1.20289 0.98633 0.92097 0.85912 1.20321 0.94997 0.97719 0.98597 1.21088 0.97074 0.93370 0.96843 1.21190 1.00241 0.96007 0.99959 1.17767 0.96103 0.79602 0.98598 1.91494 1.94770 1.36439 1.89343 1.21104 0.97117 0.96005 1.03346 1.20895 0.98552 0.93652 0.96569 1.22777 0.88760 0.73958 0.86996 1.90605 1.14331 1.50386 1.87609 1.21890 0.95810 1.01514 0.84633 0.88357 1.59002 1.23967 1.06688 1.43814 1.21695 1.00202 0.90131 1.01397 1.18997 0.93641 0.96394 0.91358 1.21229 1.30502 0.93869 1.10512 0.93118 1.24966 0.96334 0.96585 0.96253 1.69963 1.36520 1.30552 1.16105 0.86739 0.78738 0.85343 0.77646 1.20331 1.21301 1.20369 0.92505 0.92701 0.91636 0.91506 0.92048 0.90461 0.88382 0.89766 0.89113 0.84458 0.84784 0.84784 0.85152 0.83886 0.85523 0.92771 0.92920 0.94690 0.96912 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.99 16 2 C -0.14 -1.31 6.12 -26.73 -0.16 -1.48 16 3 C 0.10 1.04 4.96 -4.04 -0.02 1.02 16 4 N -0.61 -7.33 2.46 -175.05 -0.43 -7.76 16 5 C 0.15 1.58 5.53 -5.19 -0.03 1.55 16 6 C -0.11 -1.27 5.46 -104.62 -0.57 -1.84 16 7 C -0.07 -0.79 9.70 -39.60 -0.38 -1.17 16 8 C -0.16 -1.84 10.03 -39.52 -0.40 -2.24 16 9 C 0.10 1.19 7.30 -39.42 -0.29 0.90 16 10 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 11 C -0.16 -1.65 10.03 -39.51 -0.40 -2.05 16 12 C -0.08 -0.77 9.70 -39.59 -0.38 -1.15 16 13 C 0.49 7.37 6.91 -10.98 -0.08 7.29 16 14 O -0.55 -9.41 15.38 5.56 0.09 -9.33 16 15 C 0.08 1.27 2.31 -68.86 -0.16 1.11 16 16 H 0.10 1.55 6.12 -51.93 -0.32 1.23 16 17 N -0.81 -13.41 8.44 -5.65 -0.05 -13.45 16 18 C -0.10 -1.92 4.45 -26.73 -0.12 -2.04 16 19 C 0.03 0.84 4.86 -27.89 -0.14 0.70 16 20 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 21 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 24 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.70 7.15 -51.93 -0.37 0.33 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 34 H 0.10 1.27 4.83 -51.93 -0.25 1.02 16 35 H 0.08 0.64 8.01 -51.93 -0.42 0.22 16 36 H 0.09 1.00 7.36 -51.93 -0.38 0.62 16 37 H 0.14 1.74 7.60 -52.48 -0.40 1.34 16 38 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.35 5.87 8.58 -39.29 -0.34 5.53 16 42 H 0.33 4.78 9.06 -39.29 -0.36 4.42 16 43 H 0.05 1.04 6.43 -51.93 -0.33 0.70 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 389.59 15.07 5.87 5.87 Total: -1.00 -31.78 389.59 -9.26 -41.05 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.33 Total: 8.34 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -3.16 Total: -13.73 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.26 Total: -47.12 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.78 -9.26 -41.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424082014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.541 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds