Wall clock time and date at job start Tue Mar 31 2020 13:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47184 * 2 1 4 4 N 1.46505 * 109.46863 * 179.97438 * 3 2 1 5 5 C 1.46497 * 120.00015 * 270.00094 * 4 3 2 6 6 C 1.50706 * 109.46972 * 269.99750 * 5 4 3 7 7 C 1.38235 * 119.97667 * 269.73096 * 6 5 4 8 8 C 1.38201 * 120.02517 * 179.72953 * 7 6 5 9 9 C 1.38455 * 119.97542 * 0.56254 * 8 7 6 10 10 F 1.35095 * 120.03280 * 179.68124 * 9 8 7 11 11 C 1.38467 * 119.94584 * 359.71040 * 9 8 7 12 12 C 1.38198 * 119.97332 * 359.97438 * 11 9 8 13 13 C 1.34781 * 119.99740 * 90.00475 * 4 3 2 14 14 O 1.21275 * 119.99676 * 180.02562 * 13 4 3 15 15 C 1.50703 * 119.99971 * 359.97438 * 13 4 3 16 16 H 1.09002 * 109.47083 * 320.00492 * 15 13 4 17 17 N 1.46898 * 109.47113 * 200.00293 * 15 13 4 18 18 C 1.53000 * 109.46801 * 80.00207 * 15 13 4 19 19 C 1.52997 * 109.47060 * 184.99876 * 18 15 13 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 15 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99563 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46756 * 59.99920 * 24 22 20 26 26 H 1.48490 * 109.47381 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47117 * 300.00527 * 24 22 20 28 28 H 1.08997 * 109.47378 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46781 * 300.00217 * 1 2 3 30 30 H 1.08998 * 109.46775 * 60.00045 * 1 2 3 31 31 H 1.08997 * 109.46781 * 239.99783 * 2 1 3 32 32 H 1.08998 * 109.46775 * 119.99955 * 2 1 3 33 33 H 1.09007 * 109.47339 * 60.00094 * 3 2 1 34 34 H 1.08998 * 109.47228 * 299.99678 * 3 2 1 35 35 H 1.08994 * 109.47518 * 29.99992 * 5 4 3 36 36 H 1.09001 * 109.46944 * 150.00405 * 5 4 3 37 37 H 1.08005 * 119.99104 * 359.97438 * 7 6 5 38 38 H 1.07999 * 120.01519 * 180.24840 * 8 7 6 39 39 H 1.08000 * 120.01321 * 179.97438 * 11 9 8 40 40 H 1.07999 * 119.98200 * 179.97438 * 12 11 9 41 41 H 1.00899 * 111.00057 * 300.00501 * 17 15 13 42 42 H 1.00902 * 110.99515 * 63.95638 * 17 15 13 43 43 H 1.09002 * 109.47398 * 305.00045 * 18 15 13 44 44 H 1.09001 * 109.47194 * 65.00225 * 18 15 13 45 45 H 1.09002 * 109.47153 * 300.00319 * 19 18 15 46 46 H 1.08998 * 109.47533 * 59.99948 * 19 18 15 47 47 H 0.97002 * 119.99731 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2371 1.4425 1.2696 6 6 4.4882 2.8634 1.7045 7 6 5.6431 3.5126 1.3102 8 6 5.8718 4.8175 1.7038 9 6 4.9491 5.4707 2.5030 10 9 5.1745 6.7441 2.8938 11 6 3.7952 4.8176 2.9021 12 6 3.5656 3.5149 2.5019 13 6 4.1794 1.4423 -1.1664 14 8 5.3922 1.4417 -1.1658 15 6 3.4264 1.4416 -2.4718 16 1 2.5631 0.7809 -2.3929 17 7 4.3092 0.9679 -3.5461 18 6 2.9542 2.8620 -2.7887 19 6 2.0848 2.8414 -4.0475 20 6 1.6202 4.2405 -4.3602 21 1 1.9158 5.0623 -3.7248 22 6 0.8186 4.4716 -5.4579 23 7 0.4590 3.4709 -6.2318 24 14 0.2420 6.2057 -5.8450 25 1 1.4207 7.0803 -6.0710 26 1 -0.6007 6.1859 -7.0675 27 1 -0.5516 6.7297 -4.7045 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.6477 0.9289 2.0291 36 1 5.1895 0.9287 1.1397 37 1 6.3653 3.0012 0.6909 38 1 6.7723 5.3258 1.3922 39 1 3.0749 5.3259 3.5259 40 1 2.6659 3.0052 2.8134 41 1 5.1177 1.5643 -3.6392 42 1 4.5830 0.0089 -3.3925 43 1 2.3721 3.2468 -1.9514 44 1 3.8193 3.5039 -2.9552 45 1 2.6669 2.4566 -4.8849 46 1 1.2197 2.1996 -3.8812 47 1 -0.1047 3.6335 -7.0044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424082014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:26 Heat of formation + Delta-G solvation = -93.970470 kcal Electronic energy + Delta-G solvation = -27789.453836 eV Core-core repulsion = 23884.950077 eV Total energy + Delta-G solvation = -3904.503758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.95504 -41.49832 -39.91016 -37.37019 -36.89182 -34.86286 -34.12471 -32.14986 -32.10064 -31.91623 -28.59696 -27.48386 -26.77301 -24.86076 -24.05011 -22.82255 -22.65178 -21.74507 -20.14339 -18.73747 -18.54827 -18.27758 -17.51322 -17.23360 -16.98933 -16.69865 -16.57358 -16.46647 -15.87202 -15.59639 -15.28938 -14.98209 -14.76461 -14.55630 -14.42849 -14.32522 -14.10227 -13.85321 -13.45545 -13.27324 -13.12882 -13.02117 -12.84807 -12.73956 -12.61821 -12.45321 -12.27097 -12.07020 -11.94343 -11.81056 -11.62611 -11.45115 -11.22098 -10.97175 -10.48297 -10.09809 -9.85598 -9.67950 -9.47706 -8.13457 -6.23526 0.03654 0.24581 1.41127 1.43495 1.50162 1.52353 1.99185 2.44254 2.67421 3.19542 3.24693 3.45622 3.65841 3.74921 3.76035 3.93482 4.00183 4.05508 4.15460 4.20112 4.29405 4.31304 4.45639 4.55146 4.58153 4.67335 4.72285 4.86092 4.91534 4.94340 4.98845 5.01887 5.12204 5.21031 5.22987 5.24168 5.28458 5.46794 5.50762 5.56937 5.59190 5.84171 5.88462 5.98429 6.09193 6.30346 6.32752 6.51727 6.94231 7.09168 7.44450 8.97438 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008978 B = 0.004020 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3118.133760 B = 6962.780955 C = 8346.307076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.134 4.134 3 C 0.094 3.906 4 N -0.597 5.597 5 C 0.154 3.846 6 C -0.120 4.120 7 C -0.081 4.081 8 C -0.168 4.168 9 C 0.079 3.921 10 F -0.150 7.150 11 C -0.156 4.156 12 C -0.071 4.071 13 C 0.490 3.510 14 O -0.574 6.574 15 C 0.085 3.915 16 H 0.106 0.894 17 N -0.820 5.820 18 C -0.080 4.080 19 C 0.044 3.956 20 C -0.544 4.544 21 H 0.052 0.948 22 C 0.007 3.993 23 N -0.927 5.927 24 Si 0.954 3.046 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.266 1.266 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.137 0.863 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.344 0.656 42 H 0.346 0.654 43 H 0.065 0.935 44 H 0.036 0.964 45 H 0.004 0.996 46 H -0.005 1.005 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.783 -5.955 22.125 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.172 4.172 3 C -0.028 4.028 4 N -0.327 5.327 5 C 0.032 3.968 6 C -0.121 4.121 7 C -0.100 4.100 8 C -0.186 4.186 9 C 0.059 3.941 10 F -0.129 7.129 11 C -0.175 4.175 12 C -0.089 4.089 13 C 0.277 3.723 14 O -0.453 6.453 15 C -0.031 4.031 16 H 0.123 0.877 17 N -0.349 5.349 18 C -0.118 4.118 19 C 0.006 3.994 20 C -0.582 4.582 21 H 0.070 0.930 22 C -0.191 4.191 23 N -0.567 5.567 24 Si 0.779 3.221 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.191 1.191 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.142 0.858 36 H 0.099 0.901 37 H 0.142 0.858 38 H 0.155 0.845 39 H 0.174 0.826 40 H 0.184 0.816 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.023 0.977 46 H 0.014 0.986 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.701 -5.834 21.488 22.572 hybrid contribution 0.707 1.176 -0.008 1.372 sum 4.409 -4.658 21.481 22.418 Atomic orbital electron populations 1.21704 0.94354 1.02473 1.02336 1.21883 0.96815 0.95823 1.02685 1.22060 0.77647 0.98350 1.04778 1.48130 1.07556 1.72046 1.05011 1.20484 0.98827 0.91974 0.85539 1.20468 0.94821 0.98062 0.98769 1.21099 0.97823 0.93612 0.97444 1.21294 1.00745 0.96211 1.00380 1.18028 0.97069 0.79574 0.99383 1.91469 1.94926 1.36992 1.89496 1.21432 0.96684 0.96378 1.02985 1.21254 0.99122 0.93252 0.95266 1.22287 0.88245 0.74413 0.87400 1.90605 1.15108 1.51685 1.87942 1.21637 0.96297 0.99272 0.85853 0.87674 1.58970 1.23929 1.07556 1.44407 1.21393 0.98672 0.92440 0.99318 1.18780 0.93221 0.94709 0.92641 1.21657 1.30630 0.95095 1.10793 0.92996 1.25827 0.96426 1.00805 0.96079 1.70091 1.37201 1.32830 1.16617 0.85669 0.78388 0.80172 0.77826 1.19877 1.20750 1.19066 0.91774 0.90965 0.93770 0.93112 0.89881 0.87573 0.90942 0.85847 0.90054 0.85781 0.84497 0.82623 0.81627 0.84243 0.84069 0.91699 0.94505 0.97745 0.98631 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 71.98 0.71 -1.62 16 2 C -0.13 -2.14 6.12 30.59 0.19 -1.95 16 3 C 0.09 1.76 4.96 86.38 0.43 2.19 16 4 N -0.60 -13.14 2.46 -826.14 -2.03 -15.17 16 5 C 0.15 2.71 5.53 85.64 0.47 3.18 16 6 C -0.12 -2.37 5.46 -19.86 -0.11 -2.48 16 7 C -0.08 -1.94 9.70 22.26 0.22 -1.72 16 8 C -0.17 -3.98 10.03 22.31 0.22 -3.75 16 9 C 0.08 1.83 7.30 22.38 0.16 1.99 16 10 F -0.15 -3.74 17.27 44.97 0.78 -2.96 16 11 C -0.16 -2.87 10.03 22.31 0.22 -2.65 16 12 C -0.07 -1.13 9.70 22.26 0.22 -0.91 16 13 C 0.49 14.49 6.91 87.66 0.61 15.10 16 14 O -0.57 -19.53 15.38 -3.01 -0.05 -19.58 16 15 C 0.08 2.82 2.31 44.17 0.10 2.92 16 16 H 0.11 3.33 6.12 -2.39 -0.01 3.32 16 17 N -0.82 -27.87 8.44 -171.80 -1.45 -29.32 16 18 C -0.08 -3.26 4.45 30.59 0.14 -3.12 16 19 C 0.04 2.27 4.86 29.85 0.15 2.41 16 20 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 21 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 22 C 0.01 0.39 5.46 84.65 0.46 0.85 16 23 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 24 Si 0.95 44.44 29.54 68.60 2.03 46.46 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.99 7.15 -2.39 -0.02 0.97 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 1.41 8.07 -2.38 -0.02 1.39 16 34 H 0.07 1.78 4.83 -2.39 -0.01 1.77 16 35 H 0.12 1.25 8.01 -2.39 -0.02 1.23 16 36 H 0.08 1.65 7.36 -2.39 -0.02 1.63 16 37 H 0.12 3.24 7.60 -2.91 -0.02 3.22 16 38 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 39 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.34 12.02 8.58 -89.69 -0.77 11.25 16 42 H 0.35 10.04 9.06 -89.69 -0.81 9.22 16 43 H 0.06 2.48 6.43 -2.39 -0.02 2.46 16 44 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.00 0.24 7.75 -2.39 -0.02 0.22 16 46 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 47 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -69.95 389.59 3.39 -66.56 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -0.60 Total: 30.15 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 4.42 Total: -20.22 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -3.19 Total: -100.42 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.05 Total: -19.58 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.78 Total: -2.96 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -69.95 3.39 -66.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424082014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.410 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds