Wall clock time and date at job start Tue Mar 31 2020 13:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35896 * 117.00066 * 2 1 4 4 C 1.38765 * 120.04239 * 179.97438 * 3 2 1 5 5 C 1.38127 * 119.99533 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.07917 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.95641 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.46740 * 220.00516 * 7 6 5 9 9 C 1.52993 * 109.47300 * 99.99673 * 7 6 5 10 10 N 1.46908 * 109.47000 * 339.99717 * 7 6 5 11 11 C 1.46904 * 110.99976 * 205.00198 * 10 7 6 12 12 C 1.53035 * 109.44720 * 84.96566 * 11 10 7 13 13 C 1.53191 * 109.31236 * 181.38097 * 12 11 10 14 14 N 1.46929 * 108.77545 * 305.36669 * 13 12 11 15 15 C 1.36943 * 120.63294 * 233.58836 * 14 13 12 16 16 H 1.08000 * 119.99404 * 27.69321 * 15 14 13 17 17 C 1.38804 * 119.99837 * 207.69657 * 15 14 13 18 18 N 1.31618 * 120.00488 * 17.35070 * 17 15 14 19 19 Si 1.86806 * 119.99788 * 197.35548 * 17 15 14 20 20 H 1.48501 * 109.47162 * 89.99802 * 19 17 15 21 21 H 1.48496 * 109.47079 * 209.99949 * 19 17 15 22 22 H 1.48495 * 109.47122 * 330.00094 * 19 17 15 23 23 C 1.46924 * 118.73625 * 53.60723 * 14 13 12 24 24 C 1.53035 * 109.46024 * 205.03293 * 11 10 7 25 25 C 1.38462 * 120.08339 * 0.27755 * 6 5 4 26 26 F 1.35108 * 119.99946 * 179.74909 * 25 6 5 27 27 C 1.38388 * 120.00866 * 359.48384 * 25 6 5 28 28 H 1.09003 * 109.47418 * 300.00025 * 1 2 3 29 29 H 1.09008 * 109.47167 * 59.99902 * 1 2 3 30 30 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00268 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.96456 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.46963 * 60.00427 * 9 7 6 34 34 H 1.09000 * 109.47465 * 179.97438 * 9 7 6 35 35 H 1.08993 * 109.47652 * 299.99857 * 9 7 6 36 36 H 1.00896 * 110.99781 * 81.05158 * 10 7 6 37 37 H 1.09002 * 109.45959 * 325.00419 * 11 10 7 38 38 H 1.09003 * 109.50176 * 301.33002 * 12 11 10 39 39 H 1.08996 * 109.49935 * 61.43191 * 12 11 10 40 40 H 1.09005 * 109.58899 * 185.58064 * 13 12 11 41 41 H 1.08998 * 109.70874 * 65.22313 * 13 12 11 42 42 H 0.97003 * 120.00197 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.58430 * 186.60579 * 23 14 13 44 44 H 1.08998 * 109.70564 * 66.25188 * 23 14 13 45 45 H 1.09005 * 109.49484 * 298.57829 * 24 11 10 46 46 H 1.08993 * 109.50166 * 58.63982 * 24 11 10 47 47 H 1.07995 * 120.04564 * 180.27908 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4317 1.2845 0.0005 5 6 4.0577 2.5157 0.0000 6 6 3.3054 3.6757 -0.0016 7 6 3.9913 5.0175 -0.0028 8 1 3.4555 5.7000 0.6569 9 6 4.0012 5.5841 -1.4239 10 7 5.3729 4.8616 0.4718 11 6 5.8780 6.1171 1.0434 12 6 5.4537 6.2161 2.5104 13 6 5.9524 7.5419 3.0937 14 7 7.4025 7.6382 2.8771 15 6 8.2497 7.8832 3.9247 16 1 7.9759 7.5771 4.9235 17 6 9.4602 8.5252 3.7027 18 7 9.6547 9.1959 2.5870 19 14 10.8135 8.4370 4.9874 20 1 11.6741 7.2567 4.7197 21 1 11.6350 9.6725 4.9265 22 1 10.2073 8.3116 6.3371 23 6 7.9261 7.4669 1.5150 24 6 7.4053 6.1420 0.9494 25 6 1.9225 3.6060 0.0031 26 9 1.1890 4.7407 0.0067 27 6 1.2915 2.3744 -0.0013 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0205 0.3792 0.0005 32 1 5.1363 2.5724 0.0000 33 1 2.9761 5.6998 -1.7760 34 1 4.4969 6.5548 -1.4247 35 1 4.5371 4.9016 -2.0835 36 1 5.9747 4.5336 -0.2686 37 1 5.4663 6.9602 0.4887 38 1 4.3666 6.1748 2.5784 39 1 5.8855 5.3869 3.0708 40 1 5.7397 7.5741 4.1623 41 1 5.4528 8.3733 2.5965 42 1 10.5005 9.6448 2.4321 43 1 9.0157 7.4496 1.5420 44 1 7.5893 8.2905 0.8855 45 1 7.8187 5.3133 1.5245 46 1 7.7072 6.0473 -0.0936 47 1 0.2130 2.3194 -0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:42 Heat of formation + Delta-G solvation = -53.894245 kcal Electronic energy + Delta-G solvation = -27486.708879 eV Core-core repulsion = 23583.942956 eV Total energy + Delta-G solvation = -3902.765923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.95846 -41.11859 -39.92103 -38.63482 -36.84424 -34.55039 -32.67901 -31.71662 -31.48573 -30.37752 -29.37748 -28.03771 -26.52322 -24.59298 -23.84826 -23.66281 -22.94516 -21.42991 -20.72130 -19.48303 -18.73909 -18.01144 -17.16457 -17.03847 -16.87746 -16.76701 -16.33592 -16.04825 -15.64978 -15.61405 -15.38107 -15.30303 -14.91574 -14.83425 -14.35653 -14.05226 -13.92966 -13.79939 -13.57423 -13.26817 -13.11007 -12.98196 -12.89201 -12.60355 -12.52229 -12.41144 -12.17750 -12.05293 -11.98948 -11.91642 -11.79534 -11.65383 -11.26638 -11.11388 -10.52770 -9.89776 -9.41042 -9.09219 -8.68804 -7.87021 -5.31716 0.16291 0.29049 1.47502 1.48967 1.57759 2.29664 2.52113 2.58812 3.03939 3.25260 3.29600 3.70035 3.73945 3.79309 3.98398 4.01699 4.10448 4.20541 4.25780 4.34198 4.38313 4.41206 4.44960 4.55664 4.63100 4.67905 4.71520 4.75211 4.82670 4.90939 4.96255 5.01121 5.09147 5.11132 5.12158 5.16154 5.25532 5.28280 5.41935 5.46224 5.54658 5.65952 5.73502 5.76339 6.13570 6.34841 6.40040 6.52577 7.15832 7.86966 8.38577 9.19495 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024961 B = 0.002519 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.466119 B =11113.240643 C =11413.696624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.144 3.856 4 C -0.165 4.165 5 C -0.030 4.030 6 C -0.144 4.144 7 C 0.131 3.869 8 H 0.072 0.928 9 C -0.170 4.170 10 N -0.672 5.672 11 C 0.110 3.890 12 C -0.103 4.103 13 C 0.141 3.859 14 N -0.610 5.610 15 C -0.261 4.261 16 H 0.064 0.936 17 C -0.051 4.051 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.284 1.284 21 H -0.295 1.295 22 H -0.270 1.270 23 C 0.178 3.822 24 C -0.124 4.124 25 C 0.121 3.879 26 F -0.144 7.144 27 C -0.247 4.247 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.349 0.651 37 H 0.034 0.966 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.010 0.990 42 H 0.250 0.750 43 H 0.056 0.944 44 H -0.006 1.006 45 H 0.057 0.943 46 H 0.071 0.929 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.002 -17.968 -9.801 27.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.098 3.902 4 C -0.184 4.184 5 C -0.048 4.048 6 C -0.145 4.145 7 C 0.021 3.979 8 H 0.090 0.910 9 C -0.229 4.229 10 N -0.304 5.304 11 C 0.001 3.999 12 C -0.143 4.143 13 C 0.015 3.985 14 N -0.334 5.334 15 C -0.392 4.392 16 H 0.082 0.918 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.795 3.205 20 H -0.211 1.211 21 H -0.221 1.221 22 H -0.195 1.195 23 C 0.052 3.948 24 C -0.164 4.164 25 C 0.101 3.899 26 F -0.123 7.123 27 C -0.267 4.267 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.141 0.859 31 H 0.168 0.832 32 H 0.173 0.827 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.169 0.831 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.028 0.972 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.012 0.988 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.020 -18.286 -9.220 27.278 hybrid contribution 0.501 1.458 -0.121 1.547 sum -17.519 -16.828 -9.340 26.026 Atomic orbital electron populations 1.23388 0.76400 1.05845 1.02252 1.86089 1.23493 1.26000 1.88320 1.18849 0.92398 0.83935 0.95017 1.20765 0.91417 0.99505 1.06705 1.20850 1.01203 0.89311 0.93440 1.19821 0.91089 0.96952 1.06661 1.20167 0.89830 0.92405 0.95481 0.90975 1.22395 1.02798 1.01338 0.96394 1.60569 1.02181 1.29852 1.37783 1.21179 0.94070 0.89872 0.94821 1.21811 0.99320 0.97522 0.95635 1.21047 0.84215 0.94867 0.98343 1.44330 1.01354 1.82908 1.04761 1.19512 0.99417 1.30555 0.89677 0.91805 1.25780 1.02106 0.97171 0.99590 1.70184 1.24617 1.35266 1.28082 0.85267 0.79307 0.76644 0.79244 1.21066 1.22141 1.19472 1.20564 0.98244 0.92025 0.83953 1.22136 0.94839 0.99029 1.00356 1.17376 0.88694 0.81757 1.02049 1.91470 1.77386 1.49620 1.93833 1.21201 1.01829 0.90618 1.13007 0.91924 0.91650 0.85908 0.83184 0.82745 0.91977 0.92525 0.90948 0.83063 0.94831 0.91886 0.92608 0.93015 0.97193 0.94089 0.92597 0.98764 0.92402 0.91063 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.53 10.50 -92.39 -0.97 -6.50 16 3 C 0.14 2.74 6.69 22.50 0.15 2.89 16 4 C -0.17 -3.08 9.99 22.37 0.22 -2.86 16 5 C -0.03 -0.59 9.32 22.25 0.21 -0.39 16 6 C -0.14 -3.22 5.09 -19.81 -0.10 -3.32 16 7 C 0.13 3.11 2.33 44.17 0.10 3.21 16 8 H 0.07 1.97 6.90 -2.39 -0.02 1.95 16 9 C -0.17 -3.56 9.12 71.98 0.66 -2.91 16 10 N -0.67 -16.91 4.89 -473.17 -2.31 -19.23 16 11 C 0.11 3.52 2.27 44.94 0.10 3.62 16 12 C -0.10 -3.65 5.57 30.67 0.17 -3.48 16 13 C 0.14 6.09 6.52 86.36 0.56 6.65 16 14 N -0.61 -31.31 3.00 -699.09 -2.09 -33.40 16 15 C -0.26 -14.68 9.59 84.03 0.81 -13.88 16 16 H 0.06 3.52 7.89 -2.91 -0.02 3.50 16 17 C -0.05 -2.90 4.91 84.86 0.42 -2.48 16 18 N -0.94 -55.82 11.19 21.65 0.24 -55.58 16 19 Si 0.97 45.42 29.59 68.60 2.03 47.45 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 C 0.18 8.63 5.31 86.36 0.46 9.09 16 24 C -0.12 -4.51 5.36 30.67 0.16 -4.35 16 25 C 0.12 2.74 7.24 22.36 0.16 2.90 16 26 F -0.14 -3.53 16.65 44.97 0.75 -2.78 16 27 C -0.25 -4.73 9.02 22.41 0.20 -4.53 16 28 H 0.06 0.52 7.66 -2.39 -0.02 0.50 16 29 H 0.06 0.49 7.66 -2.38 -0.02 0.47 16 30 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 32 H 0.16 2.76 6.83 -2.91 -0.02 2.74 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.26 7.43 -2.39 -0.02 1.24 16 35 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 36 H 0.35 7.61 7.60 -89.70 -0.68 6.93 16 37 H 0.03 1.13 7.11 -2.39 -0.02 1.11 16 38 H 0.06 2.01 7.41 -2.39 -0.02 2.00 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.05 2.20 7.93 -2.38 -0.02 2.19 16 41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.25 14.42 8.31 -92.71 -0.77 13.64 16 43 H 0.06 3.06 6.04 -2.38 -0.01 3.05 16 44 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 46 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 47 H 0.15 2.27 6.30 -2.91 -0.02 2.26 16 Total: -1.00 -65.44 373.45 3.33 -62.11 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.29 Total: 16.51 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 5.40 Total: -8.57 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -4.17 Total: -108.21 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.97 Total: -6.50 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.75 Total: -2.78 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -65.44 3.33 -62.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.213 kcal (2) G-P(sol) polarization free energy of solvation -65.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds