Wall clock time and date at job start Tue Mar 31 2020 12:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47427 * 2 1 4 4 C 1.52998 * 109.47237 * 239.99530 * 2 1 3 5 5 N 1.46501 * 109.46728 * 119.99925 * 2 1 3 6 6 N 1.28723 * 125.31964 * 359.97438 * 5 2 1 7 7 N 1.28983 * 108.98589 * 180.02562 * 6 5 2 8 8 C 1.34187 * 107.25417 * 359.97438 * 7 6 5 9 9 C 1.48008 * 126.69976 * 179.97438 * 8 7 6 10 10 O 1.21537 * 119.99830 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99630 * 0.02562 * 9 8 7 12 12 C 1.46505 * 119.99485 * 179.97438 * 11 9 8 13 13 C 1.53076 * 109.45150 * 84.78885 * 12 11 9 14 14 C 1.53183 * 109.29478 * 181.24130 * 13 12 11 15 15 N 1.46930 * 108.89468 * 305.57480 * 14 13 12 16 16 C 1.36937 * 120.63259 * 233.51494 * 15 14 13 17 17 H 1.08000 * 119.99761 * 151.83401 * 16 15 14 18 18 C 1.38806 * 120.00219 * 331.83653 * 16 15 14 19 19 N 1.31624 * 120.00191 * 343.07619 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 163.07294 * 18 16 15 21 21 H 1.48506 * 109.46812 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47258 * 119.99807 * 20 18 16 23 23 H 1.48499 * 109.47344 * 240.00342 * 20 18 16 24 24 C 1.46925 * 118.73328 * 53.53726 * 15 14 13 25 25 C 1.53033 * 109.45770 * 204.99541 * 12 11 9 26 26 N 1.28872 * 125.32218 * 180.28495 * 5 2 1 27 27 H 1.08994 * 109.47225 * 300.00244 * 1 2 3 28 28 H 1.09002 * 109.46732 * 60.00181 * 1 2 3 29 29 H 1.08994 * 109.47173 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47361 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46836 * 300.00165 * 3 2 1 32 32 H 1.08999 * 109.46848 * 59.99332 * 3 2 1 33 33 H 1.08996 * 109.47288 * 300.00820 * 4 2 1 34 34 H 1.09002 * 109.47024 * 60.00468 * 4 2 1 35 35 H 1.08999 * 109.46940 * 180.02562 * 4 2 1 36 36 H 0.96997 * 120.00409 * 359.97438 * 11 9 8 37 37 H 1.08990 * 109.46254 * 324.97445 * 12 11 9 38 38 H 1.09005 * 109.39190 * 61.36037 * 13 12 11 39 39 H 1.09004 * 109.62337 * 301.25830 * 13 12 11 40 40 H 1.09005 * 109.58619 * 185.72200 * 14 13 12 41 41 H 1.08998 * 109.58733 * 65.43770 * 14 13 12 42 42 H 0.96995 * 120.00379 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.58688 * 66.18006 * 24 15 14 44 44 H 1.08996 * 109.58570 * 186.45714 * 24 15 14 45 45 H 1.09003 * 109.49897 * 58.66679 * 25 12 11 46 46 H 1.09004 * 109.50093 * 298.57148 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 1.2760 -1.2160 2.1072 7 7 2.0306 -1.7388 3.0134 8 6 3.3027 -1.5261 2.6434 9 6 4.5188 -1.9474 3.3743 10 8 5.6180 -1.6885 2.9252 11 7 4.4070 -2.6181 4.5380 12 6 5.6107 -3.0356 5.2613 13 6 6.1050 -1.8818 6.1374 14 6 7.3809 -2.3116 6.8681 15 7 7.1133 -3.5571 7.6003 16 6 7.3818 -3.6504 8.9398 17 1 6.8094 -4.3247 9.5596 18 6 8.3897 -2.8785 9.5011 19 7 9.2968 -2.3182 8.7292 20 14 8.4587 -2.6346 11.3518 21 1 7.3332 -3.3641 11.9894 22 1 9.7464 -3.1595 11.8726 23 1 8.3513 -1.1869 11.6647 24 6 6.5525 -4.7005 6.8677 25 6 5.2838 -4.2455 6.1395 26 7 3.2580 -0.8621 1.5037 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2492 34 1 1.6768 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2489 36 1 3.5297 -2.8244 4.8967 37 1 6.3885 -3.3050 4.5469 38 1 5.3364 -1.6264 6.8669 39 1 6.3179 -1.0136 5.5136 40 1 7.6804 -1.5327 7.5693 41 1 8.1784 -2.4776 6.1439 42 1 10.0013 -1.7790 9.1214 43 1 7.2807 -5.0621 6.1416 44 1 6.3078 -5.4989 7.5683 45 1 4.9112 -5.0579 5.5157 46 1 4.5238 -3.9696 6.8706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001002874272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:22 Heat of formation + Delta-G solvation = 109.240606 kcal Electronic energy + Delta-G solvation = -27345.597137 eV Core-core repulsion = 23502.117985 eV Total energy + Delta-G solvation = -3843.479152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.61725 -39.71020 -38.05927 -37.30224 -34.56260 -33.69055 -32.81860 -31.98075 -30.07084 -29.50459 -28.19538 -28.13961 -25.96944 -24.74569 -24.43541 -22.25942 -22.00086 -21.12535 -20.45546 -19.44960 -17.99667 -17.60265 -17.08584 -16.60500 -15.95981 -15.03027 -14.89449 -14.76527 -14.44993 -14.35045 -14.08547 -13.73256 -13.49878 -13.48025 -13.09300 -13.00068 -12.95349 -12.62044 -12.45300 -12.43486 -12.39384 -12.09154 -11.72149 -11.48925 -11.25158 -11.20408 -11.14115 -10.94965 -10.72266 -10.55469 -10.41853 -10.22041 -10.20237 -10.04093 -9.75757 -9.55647 -8.78664 -8.42057 -6.66721 -5.76624 -3.19700 0.85500 1.34982 1.41537 2.84173 3.14479 3.39310 3.47121 3.49198 3.64057 3.92719 3.95720 4.04351 4.41921 4.51475 4.82489 4.84853 4.86116 5.01456 5.05073 5.06784 5.10142 5.29113 5.34532 5.41638 5.45325 5.46725 5.50531 5.61827 5.62774 5.82571 5.87338 6.07995 6.23531 6.28464 6.43435 6.59022 6.67209 6.77855 6.85627 6.95015 7.38248 7.51565 7.70401 7.82291 8.00565 8.18382 8.47148 9.22926 9.86154 10.42721 11.32022 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.031053 B = 0.002313 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.463010 B =12102.169330 C =12225.266244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.160 4.160 5 N -0.127 5.127 6 N -0.058 5.058 7 N -0.258 5.258 8 C 0.131 3.869 9 C 0.611 3.389 10 O -0.508 6.508 11 N -0.699 5.699 12 C 0.152 3.848 13 C -0.148 4.148 14 C 0.174 3.826 15 N -0.593 5.593 16 C -0.253 4.253 17 H 0.067 0.933 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.149 3.851 25 C -0.139 4.139 26 N -0.246 5.246 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.406 0.594 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.022 0.978 42 H 0.254 0.746 43 H 0.021 0.979 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.007 4.871 -20.182 28.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 C -0.219 4.219 4 C -0.219 4.219 5 N -0.042 5.042 6 N -0.050 5.050 7 N -0.132 5.132 8 C -0.154 4.154 9 C 0.390 3.610 10 O -0.379 6.379 11 N -0.350 5.350 12 C 0.049 3.951 13 C -0.189 4.189 14 C 0.047 3.953 15 N -0.316 5.316 16 C -0.382 4.382 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.022 3.978 25 C -0.179 4.179 26 N -0.099 5.099 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.241 0.759 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.040 0.960 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.640 5.220 -20.565 28.243 hybrid contribution 0.064 0.124 1.142 1.151 sum -18.576 5.344 -19.423 27.402 Atomic orbital electron populations 1.22107 0.89806 1.04726 1.04456 1.21518 0.96593 0.92909 0.79384 1.22269 1.03648 0.91820 1.04203 1.22263 1.03618 1.01089 0.94913 1.50752 1.01005 1.34333 1.18076 1.78859 1.21675 1.08986 0.95524 1.76134 1.00198 1.17633 1.19259 1.25530 0.94671 1.01800 0.93356 1.16168 0.84494 0.79276 0.81049 1.90865 1.25145 1.54580 1.67339 1.46108 1.11723 1.55857 1.21265 1.21218 0.85173 0.95477 0.93200 1.22611 1.01478 0.96618 0.98164 1.20761 0.90373 0.89860 0.94291 1.44120 1.73869 1.07406 1.06157 1.19214 1.12063 1.23704 0.83255 0.91557 1.25070 0.95148 1.01643 0.97823 1.70041 1.14134 1.36536 1.33838 0.86235 0.77401 0.77653 0.85542 1.20246 1.21749 1.21579 1.20843 0.91523 0.91085 0.94397 1.22355 1.01291 0.95903 0.98359 1.75004 1.02552 1.17016 1.15352 0.90472 0.89080 0.90493 0.90121 0.88943 0.91248 0.91283 0.88940 0.90147 0.75941 0.89543 0.92374 0.92658 0.89160 0.95988 0.93633 0.96090 0.92165 0.92333 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 7.90 37.16 0.29 -0.37 16 2 C 0.18 1.15 1.30 -131.82 -0.17 0.98 16 3 C -0.16 -0.87 8.66 37.16 0.32 -0.54 16 4 C -0.16 -0.83 8.66 37.16 0.32 -0.51 16 5 N -0.13 -1.40 3.72 0.52 0.00 -1.40 16 6 N -0.06 -0.72 12.21 60.35 0.74 0.02 16 7 N -0.26 -3.64 12.26 32.10 0.39 -3.24 16 8 C 0.13 1.98 8.14 -156.25 -1.27 0.71 16 9 C 0.61 10.28 7.80 -12.25 -0.10 10.19 16 10 O -0.51 -10.16 16.76 5.33 0.09 -10.07 16 11 N -0.70 -10.77 5.08 -54.64 -0.28 -11.04 16 12 C 0.15 2.68 2.41 -67.87 -0.16 2.52 16 13 C -0.15 -2.99 5.66 -26.60 -0.15 -3.14 16 14 C 0.17 4.23 5.30 -3.71 -0.02 4.21 16 15 N -0.59 -14.78 3.00 -172.33 -0.52 -15.30 16 16 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 17 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 18 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -26.39 11.20 55.49 0.62 -25.77 16 20 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 25 C -0.14 -2.32 5.55 -26.62 -0.15 -2.47 16 26 N -0.25 -3.45 11.85 32.11 0.38 -3.07 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.41 5.41 8.35 -40.82 -0.34 5.07 16 37 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.09 2.46 6.06 -51.93 -0.31 2.14 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 377.61 15.07 5.69 5.69 Total: -1.00 -33.20 377.61 -6.60 -39.80 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.35 Total: 0.16 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -1.34 Total: 7.51 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 1.34 Total: -59.80 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.20 -6.60 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002874272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.036 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds