Wall clock time and date at job start Tue Mar 31 2020 12:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 120.00048 * 2 1 4 4 O 1.21537 * 120.00051 * 175.85575 * 3 2 1 5 5 C 1.48005 * 119.99777 * 355.85675 * 3 2 1 6 6 N 1.34188 * 126.69944 * 6.39392 * 5 3 2 7 7 N 1.28987 * 107.25112 * 179.97438 * 6 5 3 8 8 N 1.28719 * 108.98825 * 0.02562 * 7 6 5 9 9 C 1.46494 * 125.32087 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.47052 * 359.97176 * 9 8 7 11 11 C 1.52998 * 109.47522 * 119.97050 * 9 8 7 12 12 C 1.52999 * 109.47067 * 239.97390 * 9 8 7 13 13 N 1.28872 * 109.36038 * 359.76016 * 8 7 6 14 14 C 1.46506 * 119.99909 * 179.97438 * 2 1 3 15 15 H 1.09007 * 110.63626 * 178.31500 * 14 2 1 16 16 C 1.55150 * 110.71963 * 54.97874 * 14 2 1 17 17 C 1.55126 * 101.48832 * 205.96431 * 16 14 2 18 18 N 1.47432 * 104.71715 * 37.29821 * 17 16 14 19 19 C 1.36932 * 125.64761 * 155.81640 * 18 17 16 20 20 H 1.07995 * 120.00214 * 192.52300 * 19 18 17 21 21 C 1.38822 * 119.99868 * 12.52599 * 19 18 17 22 22 N 1.31617 * 119.99839 * 204.99732 * 21 19 18 23 23 Si 1.86800 * 120.00162 * 24.99572 * 21 19 18 24 24 H 1.48501 * 109.46999 * 270.00114 * 23 21 19 25 25 H 1.48501 * 109.46850 * 30.00096 * 23 21 19 26 26 H 1.48495 * 109.46930 * 149.99974 * 23 21 19 27 27 C 1.47015 * 108.70324 * 335.54929 * 18 17 16 28 28 H 1.09000 * 109.47261 * 275.70295 * 1 2 3 29 29 H 1.09005 * 109.47175 * 35.70775 * 1 2 3 30 30 H 1.09010 * 109.47105 * 155.70744 * 1 2 3 31 31 H 1.08996 * 109.46910 * 60.00220 * 10 9 8 32 32 H 1.08996 * 109.46894 * 180.02562 * 10 9 8 33 33 H 1.09004 * 109.46609 * 300.00155 * 10 9 8 34 34 H 1.09004 * 109.47391 * 59.99897 * 11 9 8 35 35 H 1.09001 * 109.47588 * 179.97438 * 11 9 8 36 36 H 1.08996 * 109.47311 * 300.00313 * 11 9 8 37 37 H 1.08997 * 109.47273 * 59.99611 * 12 9 8 38 38 H 1.09001 * 109.47070 * 180.02562 * 12 9 8 39 39 H 1.09004 * 109.46654 * 299.99373 * 12 9 8 40 40 H 1.08996 * 111.00713 * 324.20835 * 16 14 2 41 41 H 1.09005 * 111.00281 * 88.01857 * 16 14 2 42 42 H 1.08990 * 110.50171 * 278.45983 * 17 16 14 43 43 H 1.08995 * 110.34254 * 156.05601 * 17 16 14 44 44 H 0.97004 * 120.00210 * 354.93351 * 22 21 19 45 45 H 1.09001 * 109.87952 * 120.70668 * 27 18 17 46 46 H 1.09004 * 109.88788 * 241.87113 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1686 0.0761 5 6 1.4017 2.4473 -0.0926 6 7 0.0701 2.6098 -0.0619 7 7 -0.1636 3.8738 -0.1698 8 7 0.9568 4.5001 -0.2661 9 6 1.1071 5.9508 -0.4038 10 6 -0.2747 6.6077 -0.4163 11 6 1.9192 6.4936 0.7738 12 6 1.8336 6.2662 -1.7129 13 7 1.9259 3.6520 -0.2168 14 6 2.1975 -1.2688 0.0006 15 1 3.2727 -1.0917 -0.0295 16 6 1.7507 -2.1611 -1.1874 17 6 2.0692 -3.5793 -0.6455 18 7 1.7324 -3.5167 0.7884 19 6 1.4003 -4.5853 1.5776 20 1 0.9759 -4.4220 2.5572 21 6 1.6093 -5.8787 1.1185 22 7 0.8872 -6.8707 1.5946 23 14 2.9154 -6.2110 -0.1750 24 1 2.3137 -6.0938 -1.5275 25 1 4.0141 -5.2219 -0.0345 26 1 3.4567 -7.5815 0.0089 27 6 1.8182 -2.1177 1.2322 28 1 -0.3634 0.1021 1.0226 29 1 -0.3634 0.8345 -0.5998 30 1 -0.3634 -0.9368 -0.4228 31 1 -0.7922 6.3830 0.5163 32 1 -0.1629 7.6870 -0.5193 33 1 -0.8532 6.2210 -1.2553 34 1 2.9036 6.0256 0.7828 35 1 2.0314 7.5729 0.6711 36 1 1.4016 6.2689 1.7063 37 1 1.2551 5.8795 -2.5518 38 1 1.9458 7.3456 -1.8151 39 1 2.8180 5.7982 -1.7039 40 1 0.6851 -2.0446 -1.3844 41 1 2.3369 -1.9447 -2.0806 42 1 3.1263 -3.8097 -0.7771 43 1 1.4522 -4.3243 -1.1479 44 1 0.2608 -6.7111 2.3179 45 1 0.8540 -1.7932 1.6235 46 1 2.5848 -2.0190 2.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033096868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:34 Heat of formation + Delta-G solvation = 116.244456 kcal Electronic energy + Delta-G solvation = -27813.954272 eV Core-core repulsion = 23970.778830 eV Total energy + Delta-G solvation = -3843.175443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.63719 -41.36892 -39.28954 -38.61848 -36.59922 -34.72829 -34.47676 -33.52791 -31.35371 -29.88085 -28.64842 -28.54135 -28.07246 -26.82237 -25.65131 -25.32195 -22.79733 -22.29909 -21.82725 -20.54686 -19.53705 -18.80737 -18.58332 -18.01129 -17.70369 -16.94222 -16.49007 -16.17570 -15.53990 -15.39884 -15.29996 -15.19718 -15.16443 -14.71334 -14.39942 -14.12651 -13.95825 -13.58076 -13.51499 -13.39034 -13.24810 -13.09963 -13.02066 -12.95409 -12.85025 -12.66946 -12.54272 -12.37886 -12.17724 -12.12765 -12.01814 -11.75536 -11.59254 -11.46004 -11.42901 -11.26963 -10.65146 -9.90214 -9.16811 -8.62750 -5.44704 -0.20693 0.21353 0.60719 1.42705 1.44801 1.57024 1.72984 1.75752 2.53476 2.59543 2.88440 3.06458 3.38475 3.48014 3.49753 3.60911 3.63932 3.72403 3.85928 4.08006 4.16391 4.21912 4.31560 4.40344 4.43195 4.52179 4.55166 4.60209 4.66072 4.72649 4.72937 4.75985 4.82755 4.91793 4.92555 5.01915 5.04402 5.10748 5.15465 5.17517 5.23397 5.32423 5.57171 5.99258 6.10804 6.61128 6.82242 7.01717 7.45070 8.10986 8.85439 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.036080 B = 0.002571 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.872042 B =10889.056629 C =11131.804188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.574 5.574 3 C 0.615 3.385 4 O -0.545 6.545 5 C 0.118 3.882 6 N -0.261 5.261 7 N -0.059 5.059 8 N -0.107 5.107 9 C 0.159 3.841 10 C -0.150 4.150 11 C -0.158 4.158 12 C -0.157 4.157 13 N -0.256 5.256 14 C 0.140 3.860 15 H 0.107 0.893 16 C -0.123 4.123 17 C 0.097 3.903 18 N -0.625 5.625 19 C -0.318 4.318 20 H 0.042 0.958 21 C -0.074 4.074 22 N -0.953 5.953 23 Si 1.103 2.897 24 H -0.264 1.264 25 H -0.269 1.269 26 H -0.306 1.306 27 C 0.128 3.872 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.129 0.871 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.040 0.960 43 H 0.056 0.944 44 H 0.248 0.752 45 H 0.037 0.963 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 34.053 -9.394 35.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.305 5.305 3 C 0.397 3.603 4 O -0.419 6.419 5 C -0.165 4.165 6 N -0.135 5.135 7 N -0.051 5.051 8 N -0.024 5.024 9 C 0.081 3.919 10 C -0.208 4.208 11 C -0.217 4.217 12 C -0.215 4.215 13 N -0.110 5.110 14 C 0.036 3.964 15 H 0.125 0.875 16 C -0.162 4.162 17 C -0.028 4.028 18 N -0.353 5.353 19 C -0.447 4.447 20 H 0.060 0.940 21 C -0.268 4.268 22 N -0.597 5.597 23 Si 0.929 3.071 24 H -0.190 1.190 25 H -0.195 1.195 26 H -0.234 1.234 27 C 0.002 3.998 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.148 0.852 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.147 0.853 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -0.548 33.251 -10.235 34.795 hybrid contribution -0.486 0.138 1.921 1.986 sum -1.034 33.389 -8.313 34.424 Atomic orbital electron populations 1.22354 0.76502 1.04988 1.03533 1.47537 1.08795 1.03916 1.70222 1.16318 0.85375 0.81156 0.77404 1.90812 1.13659 1.86455 1.51011 1.24921 0.89433 0.94128 1.08010 1.76242 1.12804 1.07089 1.17387 1.78836 1.11743 0.99485 1.15041 1.51322 0.99862 1.11631 1.39593 1.22233 1.01755 0.67307 1.00638 1.22181 0.91138 1.03176 1.04260 1.22316 0.99532 1.04794 0.95029 1.22309 1.00295 1.06130 0.92805 1.74958 1.18951 0.98879 1.18210 1.22069 0.97379 0.81190 0.95716 0.87502 1.23129 1.03415 0.92476 0.97172 1.22226 0.98536 0.97581 0.84413 1.44800 1.82132 1.02552 1.05794 1.19899 1.37864 0.86288 1.00645 0.94028 1.27131 1.02532 0.90908 1.06209 1.71028 1.25397 1.35307 1.27962 0.83356 0.74857 0.74393 0.74493 1.18957 1.19463 1.23436 1.21621 0.98468 0.84566 0.95171 0.92025 0.87529 0.89621 0.91240 0.85480 0.90993 0.91877 0.85222 0.92083 0.91780 0.85275 0.91835 0.89027 0.87694 0.94282 0.92598 0.94250 0.94491 0.96173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.76 8.41 127.77 1.07 2.84 16 2 N -0.57 -17.49 2.88 -819.15 -2.36 -19.85 16 3 C 0.61 19.96 7.69 86.83 0.67 20.63 16 4 O -0.54 -20.72 16.48 -3.83 -0.06 -20.78 16 5 C 0.12 3.40 7.81 137.15 1.07 4.47 16 6 N -0.26 -6.83 9.07 -52.36 -0.48 -7.30 16 7 N -0.06 -1.33 12.21 37.02 0.45 -0.88 16 8 N -0.11 -2.12 3.72 -152.26 -0.57 -2.69 16 9 C 0.16 1.56 1.30 3.61 0.00 1.57 16 10 C -0.15 -0.77 7.90 71.98 0.57 -0.20 16 11 C -0.16 -1.20 8.66 71.98 0.62 -0.57 16 12 C -0.16 -1.07 8.66 71.98 0.62 -0.45 16 13 N -0.26 -6.67 11.85 -52.31 -0.62 -7.29 16 14 C 0.14 4.77 3.35 46.18 0.15 4.93 16 15 H 0.11 3.79 7.00 -2.38 -0.02 3.78 16 16 C -0.12 -3.87 6.60 32.06 0.21 -3.65 16 17 C 0.10 4.01 4.71 86.93 0.41 4.42 16 18 N -0.62 -30.78 3.27 -691.57 -2.26 -33.04 16 19 C -0.32 -18.79 10.44 84.04 0.88 -17.91 16 20 H 0.04 2.67 8.06 -2.91 -0.02 2.64 16 21 C -0.07 -4.42 5.42 84.86 0.46 -3.96 16 22 N -0.95 -61.58 13.70 21.65 0.30 -61.29 16 23 Si 1.10 53.63 24.69 68.60 1.69 55.32 16 24 H -0.26 -11.53 6.61 99.48 0.66 -10.87 16 25 H -0.27 -12.20 6.24 99.48 0.62 -11.58 16 26 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 27 C 0.13 5.35 6.88 86.73 0.60 5.94 16 28 H 0.06 1.62 8.08 -2.39 -0.02 1.60 16 29 H 0.11 2.55 5.27 -2.38 -0.01 2.54 16 30 H 0.09 2.17 6.13 -2.38 -0.01 2.15 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 38 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 2.65 6.14 -2.39 -0.01 2.63 16 41 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 42 H 0.04 1.61 5.61 -2.39 -0.01 1.60 16 43 H 0.06 2.42 6.23 -2.39 -0.01 2.40 16 44 H 0.25 16.14 8.73 -92.71 -0.81 15.33 16 45 H 0.04 1.54 7.07 -2.39 -0.02 1.52 16 46 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -78.18 363.55 4.26 -73.93 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 0.82 Total: 5.82 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 7.34 Total: 18.05 kcal Atomic # 7 Polarization: -126.80 SS G_CDS: -5.53 Total: -132.34 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.06 Total: -20.78 kcal Atomic # 14 Polarization: 53.63 SS G_CDS: 1.69 Total: 55.32 kcal Total: -78.18 4.26 -73.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033096868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.172 kcal (2) G-P(sol) polarization free energy of solvation -78.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds