Wall clock time and date at job start Tue Mar 31 2020 13:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.77449 * 2 1 4 4 C 1.54323 * 110.71811 * 123.23523 * 2 1 3 5 5 N 1.47026 * 107.26547 * 140.55789 * 4 2 1 6 6 C 1.34777 * 125.64655 * 181.01710 * 5 4 2 7 7 O 1.21538 * 119.99977 * 0.02745 * 6 5 4 8 8 C 1.48007 * 119.99951 * 180.02562 * 6 5 4 9 9 N 1.34178 * 126.70018 * 0.02784 * 8 6 5 10 10 N 1.28975 * 107.25429 * 179.97438 * 9 8 6 11 11 N 1.28719 * 108.98842 * 0.02562 * 10 9 8 12 12 C 1.46497 * 125.32136 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.47233 * 359.97357 * 12 11 10 14 14 C 1.52994 * 109.47516 * 119.97148 * 12 11 10 15 15 C 1.52998 * 109.47275 * 239.97323 * 12 11 10 16 16 N 1.28871 * 109.35693 * 359.75958 * 11 10 9 17 17 C 1.47419 * 108.70433 * 1.06145 * 5 4 2 18 18 C 1.54907 * 104.83402 * 335.86712 * 17 5 4 19 19 H 1.08992 * 111.00631 * 278.90379 * 18 17 5 20 20 N 1.46499 * 111.00532 * 155.08480 * 18 17 5 21 21 C 1.36931 * 120.00122 * 86.45669 * 20 18 17 22 22 H 1.08002 * 120.00098 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00429 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99535 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 180.27849 * 23 21 20 26 26 H 1.48497 * 109.47173 * 179.72427 * 25 23 21 27 27 H 1.48506 * 109.46866 * 299.71963 * 25 23 21 28 28 H 1.48501 * 109.47438 * 59.72083 * 25 23 21 29 29 H 1.09009 * 109.47014 * 183.24308 * 1 2 3 30 30 H 1.09001 * 109.47348 * 303.23800 * 1 2 3 31 31 H 1.08991 * 109.47271 * 63.24110 * 1 2 3 32 32 H 1.08993 * 109.88657 * 21.14551 * 4 2 1 33 33 H 1.08999 * 110.01490 * 260.04594 * 4 2 1 34 34 H 1.08990 * 109.47459 * 59.99609 * 13 12 11 35 35 H 1.09001 * 109.47511 * 180.02562 * 13 12 11 36 36 H 1.09006 * 109.46669 * 299.99683 * 13 12 11 37 37 H 1.08996 * 109.47371 * 59.99523 * 14 12 11 38 38 H 1.09005 * 109.47634 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.47001 * 299.99889 * 14 12 11 40 40 H 1.09002 * 109.47114 * 59.99508 * 15 12 11 41 41 H 1.08997 * 109.47602 * 180.02562 * 15 12 11 42 42 H 1.08999 * 109.46991 * 300.00165 * 15 12 11 43 43 H 1.09000 * 110.36706 * 217.03113 * 17 5 4 44 44 H 1.09000 * 110.46338 * 94.75754 * 17 5 4 45 45 H 0.97001 * 119.99790 * 266.45186 * 20 18 17 46 46 H 0.97005 * 119.99717 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0760 -0.7911 1.2073 5 7 3.2445 -1.5506 0.7390 6 6 3.9924 -2.3834 1.4898 7 8 3.7188 -2.5565 2.6612 8 6 5.1469 -3.0871 0.8877 9 7 5.5679 -2.9957 -0.3831 10 7 6.5985 -3.7621 -0.5007 11 7 6.8351 -4.3229 0.6335 12 6 7.9256 -5.2634 0.9023 13 6 8.7409 -5.4775 -0.3747 14 6 8.8315 -4.6950 1.9963 15 6 7.3435 -6.6003 1.3658 16 7 5.9661 -3.9232 1.4971 17 6 3.4633 -1.2497 -0.6875 18 6 2.0790 -0.7955 -1.2138 19 1 1.4455 -1.6535 -1.4380 20 7 2.2214 0.0696 -2.3875 21 6 2.3174 -0.4821 -3.6370 22 1 2.2877 -1.5550 -3.7574 23 6 2.4529 0.3375 -4.7492 24 7 2.4887 1.6450 -4.6025 25 14 2.5761 -0.4149 -6.4545 26 1 2.7065 0.6661 -7.4642 27 1 3.7668 -1.2999 -6.5202 28 1 1.3529 -1.2091 -6.7347 29 1 -0.3633 -1.0261 0.0581 30 1 -0.3634 0.5633 0.8595 31 1 -0.3633 0.4627 -0.9175 32 1 1.3130 -1.4758 1.5776 33 1 2.3736 -0.1043 1.9997 34 1 9.1556 -4.5252 -0.7050 35 1 9.5520 -6.1777 -0.1749 36 1 8.0954 -5.8826 -1.1541 37 1 8.2509 -4.5424 2.9060 38 1 9.6427 -5.3950 2.1966 39 1 9.2463 -3.7426 1.6660 40 1 6.6981 -7.0053 0.5863 41 1 8.1549 -7.3000 1.5662 42 1 6.7627 -6.4478 2.2754 43 1 3.7961 -2.1425 -1.2168 44 1 4.1936 -0.4484 -0.8002 45 1 2.2477 1.0332 -2.2794 46 1 2.5830 2.2178 -5.3797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054675977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:25 Heat of formation + Delta-G solvation = 112.389842 kcal Electronic energy + Delta-G solvation = -27853.841987 eV Core-core repulsion = 24010.499396 eV Total energy + Delta-G solvation = -3843.342591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.43040 -39.81344 -37.95257 -37.52009 -34.13121 -33.53681 -32.87407 -32.06669 -30.65766 -28.10420 -28.03612 -27.51962 -26.94588 -24.62283 -24.53597 -23.76433 -21.56380 -20.86799 -19.98416 -19.64605 -17.48305 -17.44308 -17.12581 -16.71312 -16.04555 -15.62339 -14.79978 -14.65944 -14.41131 -14.15414 -14.01685 -13.58930 -13.34926 -13.09282 -12.99098 -12.94431 -12.86095 -12.74740 -12.69093 -12.31808 -12.23990 -11.98628 -11.88688 -11.63059 -11.53454 -11.11681 -11.03645 -11.00565 -10.89597 -10.63465 -10.58982 -10.39209 -10.21985 -10.19528 -9.85039 -9.69102 -8.95198 -8.41124 -7.02728 -5.79158 -3.09269 1.00637 1.54498 1.57486 2.81511 3.20861 3.45365 3.49825 3.50725 3.77213 4.02125 4.05460 4.15979 4.48992 4.59615 4.88995 4.94897 4.97225 4.98144 5.12698 5.16286 5.17140 5.20134 5.21878 5.26753 5.47882 5.54348 5.58995 5.60204 5.68333 5.75980 5.80619 5.88815 5.94746 6.04394 6.06814 6.25552 6.30670 6.46826 6.49179 6.61682 6.67474 6.93449 7.58424 7.70700 8.02146 8.29824 8.38443 9.50621 10.03548 10.38874 11.42876 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.003697 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.705526 B = 7572.533137 C = 9556.475395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 H 0.087 0.913 4 C 0.120 3.880 5 N -0.590 5.590 6 C 0.625 3.375 7 O -0.527 6.527 8 C 0.133 3.867 9 N -0.240 5.240 10 N -0.057 5.057 11 N -0.129 5.129 12 C 0.177 3.823 13 C -0.154 4.154 14 C -0.160 4.160 15 C -0.160 4.160 16 N -0.251 5.251 17 C 0.069 3.931 18 C 0.177 3.823 19 H 0.066 0.934 20 N -0.708 5.708 21 C -0.244 4.244 22 H 0.072 0.928 23 C -0.008 4.008 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.291 1.291 27 H -0.284 1.284 28 H -0.286 1.286 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.387 0.613 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.062 -13.465 13.406 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 H 0.105 0.895 4 C -0.002 4.002 5 N -0.323 5.323 6 C 0.407 3.593 7 O -0.401 6.401 8 C -0.151 4.151 9 N -0.114 5.114 10 N -0.050 5.050 11 N -0.044 5.044 12 C 0.096 3.904 13 C -0.212 4.212 14 C -0.218 4.218 15 C -0.218 4.218 16 N -0.104 5.104 17 C -0.056 4.056 18 C 0.065 3.935 19 H 0.083 0.917 20 N -0.348 5.348 21 C -0.375 4.375 22 H 0.090 0.910 23 C -0.204 4.204 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.211 1.211 28 H -0.212 1.212 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.222 0.778 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.369 -13.858 13.448 21.918 hybrid contribution 0.013 0.099 -0.675 0.683 sum 10.382 -13.759 12.772 21.453 Atomic orbital electron populations 1.21672 0.93746 1.01625 1.02137 1.22514 0.96541 0.99902 0.94401 0.89481 1.22097 0.86611 0.94318 0.97223 1.48227 1.28853 1.41945 1.13236 1.15695 0.79826 0.79166 0.84624 1.90807 1.69829 1.64347 1.15089 1.25204 1.00259 1.00306 0.89342 1.76415 1.04502 1.14712 1.15803 1.78972 1.11471 1.05977 1.08564 1.50746 1.20551 1.29097 1.03965 1.21474 0.82761 0.87036 0.99101 1.22110 1.00051 1.04326 0.94688 1.22254 0.99381 1.02411 0.97786 1.22253 1.02691 0.93627 1.03253 1.74930 1.01591 1.13489 1.20399 1.23847 1.02137 1.02383 0.77258 1.21389 0.91859 0.93653 0.86646 0.91657 1.42260 1.86813 1.05085 1.00666 1.19193 1.42799 0.91905 0.83589 0.91010 1.24732 1.02435 0.95323 0.97922 1.69652 1.56755 1.02034 1.29425 0.86277 0.77983 0.77814 0.84179 1.21724 1.21094 1.21222 0.92823 0.93129 0.91214 0.91049 0.91364 0.90392 0.89191 0.90387 0.90285 0.89058 0.91251 0.91236 0.89058 0.90290 0.89131 0.90793 0.77835 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.16 37.16 0.34 -1.54 16 2 C -0.11 -1.79 3.17 -88.78 -0.28 -2.07 16 3 H 0.09 1.39 8.00 -51.93 -0.42 0.98 16 4 C 0.12 1.81 6.46 -3.06 -0.02 1.79 16 5 N -0.59 -10.18 3.33 -171.58 -0.57 -10.75 16 6 C 0.62 11.37 7.87 -12.26 -0.10 11.28 16 7 O -0.53 -10.43 17.42 5.33 0.09 -10.33 16 8 C 0.13 2.32 7.95 -156.26 -1.24 1.07 16 9 N -0.24 -4.26 9.68 32.10 0.31 -3.95 16 10 N -0.06 -0.89 12.21 60.35 0.74 -0.15 16 11 N -0.13 -1.69 3.72 0.52 0.00 -1.69 16 12 C 0.18 1.44 1.30 -131.82 -0.17 1.27 16 13 C -0.15 -0.99 7.90 37.16 0.29 -0.69 16 14 C -0.16 -1.04 8.66 37.15 0.32 -0.72 16 15 C -0.16 -1.04 8.66 37.16 0.32 -0.72 16 16 N -0.25 -3.90 11.85 32.11 0.38 -3.52 16 17 C 0.07 1.29 5.85 -2.53 -0.01 1.28 16 18 C 0.18 3.40 3.13 -65.78 -0.21 3.19 16 19 H 0.07 1.29 8.03 -51.93 -0.42 0.87 16 20 N -0.71 -16.88 5.28 -51.36 -0.27 -17.15 16 21 C -0.24 -6.54 9.98 -15.06 -0.15 -6.69 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 24 N -0.93 -27.35 13.06 55.49 0.72 -26.62 16 25 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H 0.05 0.71 8.06 -51.92 -0.42 0.29 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 1.79 6.19 -51.93 -0.32 1.47 16 44 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.39 9.77 7.71 -40.82 -0.31 9.45 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -32.61 380.76 -6.21 -38.82 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.33 Total: 5.41 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -1.00 Total: 7.14 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: 1.31 Total: -63.82 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.61 -6.21 -38.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054675977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.210 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds