Wall clock time and date at job start Tue Mar 31 2020 13:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.53000 * 109.47060 * 185.00270 * 4 2 1 6 6 H 1.09002 * 109.47069 * 304.99600 * 5 4 2 7 7 C 1.53006 * 109.46846 * 185.00166 * 5 4 2 8 8 N 1.46498 * 109.47465 * 65.00143 * 5 4 2 9 9 C 1.34775 * 119.99962 * 204.99918 * 8 5 4 10 10 O 1.21279 * 120.00095 * 0.02562 * 9 8 5 11 11 C 1.50697 * 120.00075 * 179.97438 * 9 8 5 12 12 C 1.53000 * 109.47410 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47091 * 180.02562 * 12 11 9 14 14 C 1.38227 * 120.01363 * 100.00199 * 13 12 11 15 15 C 1.38218 * 120.02409 * 179.97438 * 14 13 12 16 16 C 1.38265 * 120.05444 * 0.02562 * 15 14 13 17 17 C 1.38177 * 120.02325 * 359.97438 * 16 15 14 18 18 C 1.38438 * 120.01203 * 279.72092 * 13 12 11 19 19 F 1.35093 * 120.02535 * 359.97438 * 18 13 12 20 20 N 1.46497 * 109.47224 * 240.00747 * 2 1 3 21 21 C 1.36939 * 120.00530 * 84.99153 * 20 2 1 22 22 H 1.07999 * 119.99437 * 0.02562 * 21 20 2 23 23 C 1.38808 * 120.00276 * 179.97438 * 21 20 2 24 24 N 1.31624 * 120.00057 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00117 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47232 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47019 * 120.00509 * 25 23 21 28 28 H 1.48500 * 109.47407 * 240.00700 * 25 23 21 29 29 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 30 30 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 31 31 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 33 33 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 34 34 H 1.09002 * 109.46824 * 299.99583 * 7 5 4 35 35 H 1.09001 * 109.47241 * 59.99481 * 7 5 4 36 36 H 1.08996 * 109.46751 * 179.97438 * 7 5 4 37 37 H 0.96998 * 119.99659 * 24.99845 * 8 5 4 38 38 H 1.09001 * 109.47614 * 300.00351 * 11 9 8 39 39 H 1.09001 * 109.46875 * 59.99997 * 11 9 8 40 40 H 1.08997 * 109.47143 * 300.00196 * 12 11 9 41 41 H 1.09001 * 109.47248 * 60.00049 * 12 11 9 42 42 H 1.08001 * 119.98348 * 359.97438 * 14 13 12 43 43 H 1.08006 * 119.96929 * 179.97438 * 15 14 13 44 44 H 1.07997 * 119.98978 * 179.97438 * 16 15 14 45 45 H 1.08002 * 120.00868 * 179.97438 * 17 16 15 46 46 H 0.97001 * 119.99762 * 264.99736 * 20 2 1 47 47 H 0.97002 * 119.99591 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3135 6 1 3.9954 -0.9922 0.3866 7 6 4.0853 -1.4384 2.4923 8 7 3.9480 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9356 0.4343 0.5730 11 6 5.5551 2.6566 1.2701 12 6 6.9698 2.8719 0.7288 13 6 7.3638 4.3148 0.9129 14 6 8.1743 4.6806 1.9712 15 6 8.5363 6.0038 2.1399 16 6 8.0879 6.9631 1.2509 17 6 7.2776 6.5998 0.1923 18 6 6.9190 5.2735 0.0188 19 9 6.1320 4.9163 -1.0194 20 7 2.0183 -0.6904 -1.1962 21 6 2.1490 -0.0073 -2.3758 22 1 1.8924 1.0407 -2.4241 23 6 2.6122 -0.6614 -3.5091 24 7 2.9254 -1.9385 -3.4501 25 14 2.7911 0.2707 -5.1180 26 1 2.3770 1.6831 -4.9206 27 1 4.2083 0.2279 -5.5599 28 1 1.9308 -0.3577 -6.1525 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7716 1.2054 33 1 1.6054 -0.2618 2.1369 34 1 3.6547 -1.0594 3.4192 35 1 3.8002 -2.4820 2.3592 36 1 5.1716 -1.3617 2.5378 37 1 3.3285 1.4128 1.9029 38 1 4.8579 3.2954 0.7279 39 1 5.5291 2.9083 2.3304 40 1 7.6673 2.2332 1.2707 41 1 6.9954 2.6204 -0.3315 42 1 8.5248 3.9321 2.6664 43 1 9.1693 6.2887 2.9674 44 1 8.3710 7.9968 1.3840 45 1 6.9272 7.3494 -0.5018 46 1 2.2491 -1.6316 -1.1527 47 1 3.2488 -2.3956 -4.2422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146276122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:15 Heat of formation + Delta-G solvation = -90.074106 kcal Electronic energy + Delta-G solvation = -27293.615074 eV Core-core repulsion = 23389.280275 eV Total energy + Delta-G solvation = -3904.334799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.90685 -40.93921 -39.92659 -38.35510 -36.08303 -35.07312 -34.01725 -32.26482 -31.47302 -30.55400 -30.20828 -27.59919 -25.95640 -25.62830 -23.68933 -22.76814 -22.00668 -21.32611 -21.16674 -19.30608 -18.54718 -18.08914 -17.51169 -17.21412 -16.68858 -16.57995 -16.48760 -16.24024 -15.67000 -15.49386 -15.17929 -14.96140 -14.56088 -14.51616 -14.23821 -14.00339 -13.90314 -13.60778 -13.56750 -13.34641 -13.15020 -12.98359 -12.84462 -12.75361 -12.67801 -12.58861 -12.23893 -12.17106 -12.05323 -11.85634 -11.82071 -11.56436 -11.42053 -10.94949 -10.81185 -9.94060 -9.89081 -9.59029 -8.96099 -7.94260 -5.19216 0.19921 0.28138 1.39281 1.42219 1.49872 1.74971 2.32301 2.54030 2.68462 3.35426 3.40460 3.58640 3.78561 3.83026 3.93161 3.99776 4.03539 4.14213 4.20429 4.29018 4.41163 4.42890 4.44816 4.55033 4.60146 4.70760 4.79366 4.82856 4.84301 4.94486 4.96349 5.04315 5.09016 5.09774 5.16377 5.25090 5.28261 5.35486 5.43544 5.45206 5.50161 5.51229 5.62700 5.70789 5.98749 6.29615 6.68834 7.35121 7.41872 8.15725 8.34951 9.29814 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010669 B = 0.003613 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.703823 B = 7746.973430 C = 9318.346040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.163 3.837 3 H 0.042 0.958 4 C -0.117 4.117 5 C 0.144 3.856 6 H 0.042 0.958 7 C -0.149 4.149 8 N -0.706 5.706 9 C 0.505 3.495 10 O -0.590 6.590 11 C -0.121 4.121 12 C -0.061 4.061 13 C -0.125 4.125 14 C -0.090 4.090 15 C -0.122 4.122 16 C -0.092 4.092 17 C -0.160 4.160 18 C 0.066 3.934 19 F -0.158 7.158 20 N -0.731 5.731 21 C -0.224 4.224 22 H 0.068 0.932 23 C -0.078 4.078 24 N -0.968 5.968 25 Si 0.959 3.041 26 H -0.268 1.268 27 H -0.302 1.302 28 H -0.289 1.289 29 H 0.077 0.923 30 H 0.028 0.972 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.412 0.588 38 H 0.092 0.908 39 H 0.131 0.869 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.152 0.848 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.144 0.856 46 H 0.370 0.630 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.036 17.632 20.472 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.055 3.945 3 H 0.060 0.940 4 C -0.155 4.155 5 C 0.040 3.960 6 H 0.061 0.939 7 C -0.207 4.207 8 N -0.357 5.357 9 C 0.293 3.707 10 O -0.471 6.471 11 C -0.161 4.161 12 C -0.099 4.099 13 C -0.125 4.125 14 C -0.108 4.108 15 C -0.140 4.140 16 C -0.110 4.110 17 C -0.179 4.179 18 C 0.047 3.953 19 F -0.137 7.137 20 N -0.372 5.372 21 C -0.356 4.356 22 H 0.086 0.914 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.789 3.211 26 H -0.192 1.192 27 H -0.230 1.230 28 H -0.216 1.216 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.249 0.751 38 H 0.111 0.889 39 H 0.149 0.851 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.169 0.831 43 H 0.179 0.821 44 H 0.180 0.820 45 H 0.161 0.839 46 H 0.201 0.799 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.512 17.222 19.963 27.415 hybrid contribution -0.280 -0.274 -1.936 1.975 sum 7.232 16.949 18.027 25.778 Atomic orbital electron populations 1.22305 0.97679 1.00866 1.00715 1.20532 0.92667 0.95230 0.86082 0.94044 1.22069 0.92875 1.02128 0.98460 1.20814 0.95516 0.81478 0.98237 0.93933 1.22063 1.00373 1.00104 0.98190 1.45879 1.16395 1.11382 1.62093 1.21180 0.81782 0.91119 0.76627 1.90701 1.52894 1.58468 1.45018 1.21588 0.97594 0.91515 1.05405 1.20141 0.96344 0.92086 1.01344 1.19972 1.01105 0.94494 0.96974 1.21274 0.95652 0.97941 0.95894 1.21624 0.99985 0.92091 1.00281 1.21420 0.95193 1.01643 0.92717 1.21419 1.01387 0.93631 1.01437 1.18094 0.95473 0.94722 0.87008 1.91479 1.72525 1.92867 1.56836 1.42606 1.78194 1.10078 1.06286 1.19531 1.33856 0.93729 0.88517 0.91359 1.25413 1.03573 0.96853 1.01149 1.69806 1.53183 1.10068 1.28964 0.85271 0.76520 0.78377 0.80919 1.19239 1.22961 1.21639 0.90390 0.95272 0.93900 0.90725 0.87407 0.89772 0.91462 0.94338 0.75092 0.88946 0.85133 0.89500 0.93617 0.83074 0.82076 0.82020 0.83863 0.79882 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.19 9.49 71.98 0.68 -4.51 16 2 C 0.16 6.10 2.84 44.99 0.13 6.23 16 3 H 0.04 1.59 7.56 -2.39 -0.02 1.57 16 4 C -0.12 -3.37 4.29 30.59 0.13 -3.24 16 5 C 0.14 4.71 2.52 44.99 0.11 4.83 16 6 H 0.04 1.96 7.05 -2.39 -0.02 1.94 16 7 C -0.15 -3.96 9.48 71.98 0.68 -3.27 16 8 N -0.71 -20.10 4.45 -442.53 -1.97 -22.07 16 9 C 0.51 16.86 7.79 87.66 0.68 17.54 16 10 O -0.59 -26.33 15.64 -3.03 -0.05 -26.37 16 11 C -0.12 -2.96 5.68 29.85 0.17 -2.79 16 12 C -0.06 -1.64 4.36 29.85 0.13 -1.51 16 13 C -0.12 -2.75 5.14 -19.82 -0.10 -2.85 16 14 C -0.09 -1.37 9.67 22.26 0.22 -1.15 16 15 C -0.12 -1.36 10.04 22.27 0.22 -1.14 16 16 C -0.09 -1.11 10.04 22.26 0.22 -0.88 16 17 C -0.16 -2.86 10.03 22.31 0.22 -2.63 16 18 C 0.07 1.61 7.24 22.38 0.16 1.77 16 19 F -0.16 -4.91 16.66 44.97 0.75 -4.16 16 20 N -0.73 -37.39 4.49 -322.95 -1.45 -38.84 16 21 C -0.22 -12.98 9.93 84.03 0.83 -12.15 16 22 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 23 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 24 N -0.97 -62.69 13.06 21.65 0.28 -62.41 16 25 Si 0.96 49.65 29.55 68.60 2.03 51.68 16 26 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.30 -15.98 7.11 99.48 0.71 -15.27 16 28 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.41 8.45 8.60 -92.71 -0.80 7.65 16 38 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.09 2.21 7.96 -2.39 -0.02 2.19 16 41 H 0.05 1.57 7.90 -2.39 -0.02 1.56 16 42 H 0.15 1.66 8.04 -2.91 -0.02 1.64 16 43 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 44 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 45 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 46 H 0.37 20.62 7.80 -92.71 -0.72 19.90 16 47 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -81.44 395.87 4.01 -77.43 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: -0.55 Total: 34.79 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 4.97 Total: -10.05 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -3.14 Total: -123.31 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.05 Total: -26.37 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.75 Total: -4.16 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.03 Total: 51.68 kcal Total: -81.44 4.01 -77.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146276122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.640 kcal (2) G-P(sol) polarization free energy of solvation -81.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds