Wall clock time and date at job start Tue Mar 31 2020 13:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.46798 * 2 1 4 4 C 1.36935 * 120.00192 * 275.76687 * 3 2 1 5 5 H 1.07994 * 119.99964 * 33.53770 * 4 3 2 6 6 C 1.38816 * 120.00212 * 213.53394 * 4 3 2 7 7 N 1.31623 * 119.99648 * 17.08880 * 6 4 3 8 8 Si 1.86796 * 120.00009 * 197.08309 * 6 4 3 9 9 H 1.48497 * 109.47398 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47039 * 120.00471 * 8 6 4 11 11 H 1.48505 * 109.47171 * 240.00139 * 8 6 4 12 12 C 1.46503 * 119.99851 * 95.77075 * 3 2 1 13 13 H 1.09000 * 109.46771 * 179.46147 * 12 3 2 14 14 C 1.52996 * 109.47233 * 59.46429 * 12 3 2 15 15 C 1.52995 * 109.47193 * 299.45778 * 12 3 2 16 16 N 1.46497 * 109.47335 * 305.00244 * 15 12 3 17 17 C 1.34779 * 119.99977 * 179.97438 * 16 15 12 18 18 O 1.21277 * 120.00302 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99952 * 180.02562 * 17 16 15 20 20 H 1.09002 * 109.47084 * 300.00109 * 19 17 16 21 21 C 1.53005 * 109.47096 * 59.99677 * 19 17 16 22 22 C 1.50700 * 109.47167 * 179.97438 * 19 17 16 23 23 C 1.38213 * 120.01409 * 299.99762 * 22 19 17 24 24 C 1.38219 * 120.02747 * 180.02562 * 23 22 19 25 25 C 1.38265 * 120.05250 * 0.02562 * 24 23 22 26 26 C 1.38180 * 120.02477 * 359.97438 * 25 24 23 27 27 C 1.38439 * 120.01143 * 120.02343 * 22 19 17 28 28 F 1.35096 * 120.02514 * 359.97438 * 27 22 19 29 29 H 1.09006 * 109.47141 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47198 * 299.99883 * 1 2 3 31 31 H 1.08999 * 109.47492 * 60.00384 * 1 2 3 32 32 H 1.08994 * 109.46931 * 239.99638 * 2 1 3 33 33 H 1.09003 * 109.47152 * 119.99960 * 2 1 3 34 34 H 0.96998 * 119.99403 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.47615 * 59.99973 * 14 12 3 36 36 H 1.09001 * 109.47578 * 180.02562 * 14 12 3 37 37 H 1.09000 * 109.47012 * 299.99570 * 14 12 3 38 38 H 1.09000 * 109.47494 * 184.99801 * 15 12 3 39 39 H 1.09002 * 109.47010 * 65.00338 * 15 12 3 40 40 H 0.97000 * 119.99883 * 0.02562 * 16 15 12 41 41 H 1.08997 * 109.47047 * 180.02562 * 21 19 17 42 42 H 1.08995 * 109.47069 * 300.00285 * 21 19 17 43 43 H 1.09002 * 109.46802 * 60.00258 * 21 19 17 44 44 H 1.08003 * 119.98425 * 359.74568 * 23 22 19 45 45 H 1.08002 * 119.97434 * 180.02562 * 24 23 22 46 46 H 1.08000 * 119.99214 * 179.97438 * 25 24 23 47 47 H 1.07994 * 120.01682 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1341 2.0665 -1.1799 5 1 1.4332 1.8846 -1.9810 6 6 3.1525 2.9950 -1.3461 7 7 4.1901 2.9858 -0.5364 8 14 3.0504 4.2574 -2.7192 9 1 1.7929 4.0573 -3.4832 10 1 3.0635 5.6237 -2.1374 11 1 4.2135 4.0953 -3.6282 12 6 2.3827 2.0293 1.2623 13 1 2.7300 3.0431 1.0632 14 6 3.4982 1.2322 1.9414 15 6 1.1602 2.0802 2.1809 16 7 0.0529 2.7395 1.4842 17 6 -1.1338 2.8978 2.1032 18 8 -1.2849 2.4949 3.2370 19 6 -2.2731 3.5754 1.3862 20 1 -1.9799 4.5897 1.1154 21 6 -2.6185 2.7891 0.1199 22 6 -3.4775 3.6246 2.2906 23 6 -4.0331 2.4519 2.7665 24 6 -5.1381 2.4967 3.5956 25 6 -5.6893 3.7143 3.9496 26 6 -5.1356 4.8880 3.4751 27 6 -4.0282 4.8444 2.6447 28 9 -3.4860 5.9912 2.1802 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.9019 3.6344 -0.6528 35 1 4.3691 1.1960 1.2871 36 1 3.7690 1.7141 2.8809 37 1 3.1508 0.2184 2.1406 38 1 1.4067 2.6402 3.0831 39 1 0.8667 1.0660 2.4518 40 1 0.1737 3.0613 0.5772 41 1 -3.4422 3.2795 -0.3989 42 1 -1.7475 2.7532 -0.5343 43 1 -2.9117 1.7748 0.3908 44 1 -3.6063 1.5000 2.4867 45 1 -5.5713 1.5798 3.9673 46 1 -6.5530 3.7481 4.5972 47 1 -5.5660 5.8390 3.7519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155910654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:08 Heat of formation + Delta-G solvation = -46.168655 kcal Electronic energy + Delta-G solvation = -28600.708110 eV Core-core repulsion = 24698.277194 eV Total energy + Delta-G solvation = -3902.430916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.92211 -39.99124 -38.55358 -36.90266 -34.16364 -33.63094 -31.89887 -31.09449 -30.55830 -29.36573 -28.19651 -25.78366 -24.44165 -23.93564 -22.75450 -21.94117 -21.56638 -19.56158 -19.14112 -17.69889 -17.09938 -16.80689 -16.31708 -15.86577 -15.51625 -15.30934 -14.83877 -14.71421 -14.22034 -14.15010 -13.71596 -13.64390 -13.22706 -13.11750 -12.75336 -12.68749 -12.33963 -12.21675 -12.17907 -12.03444 -11.85601 -11.81847 -11.51258 -11.14642 -11.05563 -10.96256 -10.93132 -10.83205 -10.66431 -10.29609 -10.08650 -9.65811 -9.44995 -9.35183 -8.96869 -8.66928 -8.54008 -8.37321 -6.68586 -5.90475 -3.39621 1.10547 1.19629 3.06581 3.29106 3.39138 3.39590 3.47104 3.86298 4.22889 4.39923 4.46805 4.68178 4.86514 5.09868 5.16223 5.23836 5.25526 5.30560 5.35583 5.38627 5.72459 5.82332 5.86974 5.91086 6.00243 6.03757 6.06090 6.16939 6.20173 6.24733 6.33029 6.36503 6.39718 6.47639 6.52852 6.61549 6.66797 6.81965 6.84582 6.89319 7.07984 7.14224 7.46982 7.55905 7.75035 8.15954 8.41241 8.73932 9.13951 9.75407 10.32699 11.15970 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.003858 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.744279 B = 7256.195190 C = 7972.973574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.263 4.263 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.290 1.290 12 C 0.176 3.824 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.103 3.897 16 N -0.698 5.698 17 C 0.512 3.488 18 O -0.552 6.552 19 C -0.077 4.077 20 H 0.105 0.895 21 C -0.139 4.139 22 C -0.090 4.090 23 C -0.055 4.055 24 C -0.133 4.133 25 C -0.096 4.096 26 C -0.159 4.159 27 C 0.101 3.899 28 F -0.139 7.139 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.036 0.964 34 H 0.254 0.746 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.030 0.970 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.411 0.589 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.682 0.188 5.449 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.393 4.393 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.069 3.931 13 H 0.118 0.882 14 C -0.203 4.203 15 C -0.023 4.023 16 N -0.348 5.348 17 C 0.297 3.703 18 O -0.431 6.431 19 C -0.098 4.098 20 H 0.123 0.877 21 C -0.197 4.197 22 C -0.091 4.091 23 C -0.073 4.073 24 C -0.151 4.151 25 C -0.114 4.114 26 C -0.178 4.178 27 C 0.082 3.918 28 F -0.118 7.118 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.248 0.752 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.148 0.852 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.564 0.038 6.208 16.756 hybrid contribution 0.286 1.095 -1.154 1.616 sum -15.278 1.134 5.054 16.132 Atomic orbital electron populations 1.22463 1.00078 0.98942 1.01512 1.20749 0.91691 0.87468 0.98683 1.43880 1.75977 1.08248 1.02263 1.19113 1.08355 1.18356 0.93457 0.91813 1.25161 0.94537 1.01332 0.97763 1.70013 1.07727 1.36006 1.39471 0.86362 0.77648 0.81635 0.81930 1.20150 1.21523 1.21699 1.20495 0.88926 0.99502 0.84219 0.88232 1.22014 1.01136 0.97977 0.99207 1.22163 0.88374 0.96081 0.95681 1.45944 1.11035 1.58752 1.19066 1.20217 0.83750 0.79742 0.86575 1.90661 1.82974 1.51046 1.18459 1.20238 0.91722 1.02365 0.95523 0.87682 1.21800 1.02908 0.99885 0.95064 1.19428 0.97246 0.92172 1.00298 1.20844 0.93955 0.97584 0.94930 1.21168 0.96835 0.98093 0.99008 1.20956 0.99650 0.91689 0.99098 1.21040 0.96748 1.00006 0.99995 1.17542 0.94942 0.81264 0.98065 1.91475 1.85234 1.47978 1.87106 0.94942 0.92913 0.93408 0.94170 0.94570 0.93594 0.90370 0.94850 0.95145 0.93082 0.92864 0.75191 0.91639 0.90576 0.91852 0.85242 0.85501 0.85327 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.88 37.16 0.37 -2.55 16 2 C 0.14 2.76 5.69 -4.04 -0.02 2.73 16 3 N -0.58 -12.74 1.85 -165.67 -0.31 -13.04 16 4 C -0.26 -6.37 9.22 -15.06 -0.14 -6.51 16 5 H 0.06 1.55 7.89 -52.49 -0.41 1.14 16 6 C 0.01 0.31 4.86 -17.43 -0.08 0.22 16 7 N -0.89 -23.35 10.66 55.49 0.59 -22.76 16 8 Si 0.89 20.05 29.59 -169.99 -5.03 15.02 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.18 3.71 1.93 -67.93 -0.13 3.58 16 13 H 0.10 2.41 6.02 -51.93 -0.31 2.09 16 14 C -0.14 -2.92 9.05 37.16 0.34 -2.58 16 15 C 0.10 1.95 4.34 -4.05 -0.02 1.93 16 16 N -0.70 -12.42 3.94 -60.30 -0.24 -12.66 16 17 C 0.51 8.85 6.83 -10.98 -0.08 8.77 16 18 O -0.55 -11.03 15.11 5.56 0.08 -10.95 16 19 C -0.08 -1.10 2.89 -92.92 -0.27 -1.37 16 20 H 0.11 1.48 7.13 -51.93 -0.37 1.11 16 21 C -0.14 -1.72 8.90 37.16 0.33 -1.39 16 22 C -0.09 -1.26 4.40 -104.56 -0.46 -1.72 16 23 C -0.06 -0.71 7.93 -39.60 -0.31 -1.03 16 24 C -0.13 -1.43 10.04 -39.58 -0.40 -1.82 16 25 C -0.10 -0.95 10.04 -39.59 -0.40 -1.35 16 26 C -0.16 -1.78 10.03 -39.51 -0.40 -2.17 16 27 C 0.10 1.37 7.25 -39.42 -0.29 1.08 16 28 F -0.14 -1.99 16.20 2.25 0.04 -1.95 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.92 5.06 -51.93 -0.26 0.66 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 33 H 0.04 0.69 6.41 -51.93 -0.33 0.36 16 34 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 35 H 0.08 1.80 7.45 -51.93 -0.39 1.41 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.57 6.65 -51.93 -0.35 0.22 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 1.03 7.04 -51.93 -0.37 0.67 16 40 H 0.41 7.48 7.28 -40.82 -0.30 7.18 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.99 7.56 -51.93 -0.39 0.59 16 43 H 0.06 0.76 7.38 -51.93 -0.38 0.38 16 44 H 0.13 1.67 7.52 -52.48 -0.39 1.28 16 45 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 376.60 15.07 5.68 5.68 Total: -1.00 -27.55 376.60 -8.34 -35.88 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -7.19 Total: 8.94 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.95 Total: -4.17 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.05 Total: -48.46 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.55 -8.34 -35.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155910654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.284 kcal (2) G-P(sol) polarization free energy of solvation -27.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds