Wall clock time and date at job start Tue Mar 31 2020 13:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.46798 * 2 1 4 4 C 1.36935 * 120.00192 * 275.76687 * 3 2 1 5 5 H 1.07994 * 119.99964 * 33.53770 * 4 3 2 6 6 C 1.38816 * 120.00212 * 213.53394 * 4 3 2 7 7 N 1.31623 * 119.99648 * 17.08880 * 6 4 3 8 8 Si 1.86796 * 120.00009 * 197.08309 * 6 4 3 9 9 H 1.48497 * 109.47398 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47039 * 120.00471 * 8 6 4 11 11 H 1.48505 * 109.47171 * 240.00139 * 8 6 4 12 12 C 1.46503 * 119.99851 * 95.77075 * 3 2 1 13 13 H 1.09000 * 109.46771 * 179.46147 * 12 3 2 14 14 C 1.52996 * 109.47233 * 59.46429 * 12 3 2 15 15 C 1.52995 * 109.47193 * 299.45778 * 12 3 2 16 16 N 1.46497 * 109.47335 * 305.00244 * 15 12 3 17 17 C 1.34779 * 119.99977 * 179.97438 * 16 15 12 18 18 O 1.21277 * 120.00302 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99952 * 180.02562 * 17 16 15 20 20 H 1.09002 * 109.47084 * 300.00109 * 19 17 16 21 21 C 1.53005 * 109.47096 * 59.99677 * 19 17 16 22 22 C 1.50700 * 109.47167 * 179.97438 * 19 17 16 23 23 C 1.38213 * 120.01409 * 299.99762 * 22 19 17 24 24 C 1.38219 * 120.02747 * 180.02562 * 23 22 19 25 25 C 1.38265 * 120.05250 * 0.02562 * 24 23 22 26 26 C 1.38180 * 120.02477 * 359.97438 * 25 24 23 27 27 C 1.38439 * 120.01143 * 120.02343 * 22 19 17 28 28 F 1.35096 * 120.02514 * 359.97438 * 27 22 19 29 29 H 1.09006 * 109.47141 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47198 * 299.99883 * 1 2 3 31 31 H 1.08999 * 109.47492 * 60.00384 * 1 2 3 32 32 H 1.08994 * 109.46931 * 239.99638 * 2 1 3 33 33 H 1.09003 * 109.47152 * 119.99960 * 2 1 3 34 34 H 0.96998 * 119.99403 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.47615 * 59.99973 * 14 12 3 36 36 H 1.09001 * 109.47578 * 180.02562 * 14 12 3 37 37 H 1.09000 * 109.47012 * 299.99570 * 14 12 3 38 38 H 1.09000 * 109.47494 * 184.99801 * 15 12 3 39 39 H 1.09002 * 109.47010 * 65.00338 * 15 12 3 40 40 H 0.97000 * 119.99883 * 0.02562 * 16 15 12 41 41 H 1.08997 * 109.47047 * 180.02562 * 21 19 17 42 42 H 1.08995 * 109.47069 * 300.00285 * 21 19 17 43 43 H 1.09002 * 109.46802 * 60.00258 * 21 19 17 44 44 H 1.08003 * 119.98425 * 359.74568 * 23 22 19 45 45 H 1.08002 * 119.97434 * 180.02562 * 24 23 22 46 46 H 1.08000 * 119.99214 * 179.97438 * 25 24 23 47 47 H 1.07994 * 120.01682 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1341 2.0665 -1.1799 5 1 1.4332 1.8846 -1.9810 6 6 3.1525 2.9950 -1.3461 7 7 4.1901 2.9858 -0.5364 8 14 3.0504 4.2574 -2.7192 9 1 1.7929 4.0573 -3.4832 10 1 3.0635 5.6237 -2.1374 11 1 4.2135 4.0953 -3.6282 12 6 2.3827 2.0293 1.2623 13 1 2.7300 3.0431 1.0632 14 6 3.4982 1.2322 1.9414 15 6 1.1602 2.0802 2.1809 16 7 0.0529 2.7395 1.4842 17 6 -1.1338 2.8978 2.1032 18 8 -1.2849 2.4949 3.2370 19 6 -2.2731 3.5754 1.3862 20 1 -1.9799 4.5897 1.1154 21 6 -2.6185 2.7891 0.1199 22 6 -3.4775 3.6246 2.2906 23 6 -4.0331 2.4519 2.7665 24 6 -5.1381 2.4967 3.5956 25 6 -5.6893 3.7143 3.9496 26 6 -5.1356 4.8880 3.4751 27 6 -4.0282 4.8444 2.6447 28 9 -3.4860 5.9912 2.1802 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.9019 3.6344 -0.6528 35 1 4.3691 1.1960 1.2871 36 1 3.7690 1.7141 2.8809 37 1 3.1508 0.2184 2.1406 38 1 1.4067 2.6402 3.0831 39 1 0.8667 1.0660 2.4518 40 1 0.1737 3.0613 0.5772 41 1 -3.4422 3.2795 -0.3989 42 1 -1.7475 2.7532 -0.5343 43 1 -2.9117 1.7748 0.3908 44 1 -3.6063 1.5000 2.4867 45 1 -5.5713 1.5798 3.9673 46 1 -6.5530 3.7481 4.5972 47 1 -5.5660 5.8390 3.7519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155910654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:07 Heat of formation + Delta-G solvation = -58.754017 kcal Electronic energy + Delta-G solvation = -28601.253853 eV Core-core repulsion = 24698.277194 eV Total energy + Delta-G solvation = -3902.976658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.93598 -41.23605 -39.66538 -38.51494 -35.33550 -35.12311 -33.69295 -32.64698 -31.44293 -30.36255 -29.90422 -27.23482 -25.82008 -25.47061 -23.71017 -23.37269 -22.78241 -21.07179 -20.65433 -18.78435 -18.59719 -18.12551 -17.46957 -17.04330 -16.75533 -16.53468 -16.41063 -16.19765 -15.67547 -15.34981 -15.05154 -14.75551 -14.61976 -14.29490 -14.12436 -13.95375 -13.91729 -13.54853 -13.45908 -13.23110 -13.13219 -12.95411 -12.87850 -12.79759 -12.69964 -12.51708 -12.37542 -12.10617 -12.01114 -11.90204 -11.78719 -11.33914 -11.15084 -10.74233 -10.42801 -9.88651 -9.86053 -9.59528 -8.50875 -7.80904 -5.31003 0.19975 0.31395 1.48391 1.54676 1.60859 1.69026 2.33020 2.55244 2.75754 3.30422 3.34055 3.44945 3.64977 3.74271 3.94817 4.11191 4.16392 4.23499 4.27495 4.42223 4.45600 4.49472 4.58422 4.69685 4.77198 4.81997 4.84836 4.90591 4.94334 4.97196 5.00801 5.08134 5.11464 5.17304 5.23902 5.26034 5.36621 5.44055 5.51129 5.54473 5.63853 5.71534 5.78346 5.88022 5.98175 6.51669 6.71862 7.25264 7.32314 7.94491 8.46822 9.23025 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.003858 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.744279 B = 7256.195190 C = 7972.973574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.138 3.862 3 N -0.590 5.590 4 C -0.257 4.257 5 H 0.064 0.936 6 C -0.031 4.031 7 N -0.915 5.915 8 Si 0.948 3.052 9 H -0.265 1.265 10 H -0.295 1.295 11 H -0.301 1.301 12 C 0.183 3.817 13 H 0.068 0.932 14 C -0.135 4.135 15 C 0.117 3.883 16 N -0.697 5.697 17 C 0.514 3.486 18 O -0.579 6.579 19 C -0.071 4.071 20 H 0.103 0.897 21 C -0.132 4.132 22 C -0.110 4.110 23 C -0.072 4.072 24 C -0.131 4.131 25 C -0.088 4.088 26 C -0.159 4.159 27 C 0.075 3.925 28 F -0.151 7.151 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.030 0.970 33 H 0.042 0.958 34 H 0.247 0.753 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.410 0.590 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.124 0.876 45 H 0.154 0.846 46 H 0.166 0.834 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.344 -0.236 6.014 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.388 4.388 5 H 0.081 0.919 6 C -0.229 4.229 7 N -0.560 5.560 8 Si 0.778 3.222 9 H -0.190 1.190 10 H -0.222 1.222 11 H -0.228 1.228 12 C 0.075 3.925 13 H 0.086 0.914 14 C -0.194 4.194 15 C -0.009 4.009 16 N -0.347 5.347 17 C 0.301 3.699 18 O -0.459 6.459 19 C -0.092 4.092 20 H 0.121 0.879 21 C -0.189 4.189 22 C -0.111 4.111 23 C -0.090 4.090 24 C -0.149 4.149 25 C -0.106 4.106 26 C -0.178 4.178 27 C 0.056 3.944 28 F -0.129 7.129 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.246 0.754 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.142 0.858 45 H 0.171 0.829 46 H 0.183 0.817 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.253 -0.399 6.763 19.470 hybrid contribution 1.058 1.168 -1.268 2.023 sum -17.195 0.769 5.495 18.068 Atomic orbital electron populations 1.22265 0.97810 1.00291 1.01083 1.20840 0.93295 0.86091 0.98473 1.43996 1.76111 1.09200 1.01922 1.19285 1.07563 1.17945 0.93978 0.91870 1.25696 0.94581 1.03005 0.99608 1.70142 1.08288 1.36532 1.40991 0.85513 0.77415 0.79482 0.79800 1.18974 1.22226 1.22813 1.20324 0.89884 0.97865 0.84415 0.91353 1.21880 0.99656 0.98838 0.99070 1.21873 0.87917 0.96164 0.94979 1.45920 1.11105 1.58781 1.18898 1.20699 0.83932 0.79045 0.86226 1.90636 1.83404 1.52217 1.19674 1.20188 0.90924 1.01949 0.96173 0.87908 1.21758 1.03121 0.99978 0.94044 1.19471 0.97469 0.92954 1.01234 1.20940 0.95084 0.96938 0.96007 1.21536 0.95819 0.99743 0.97780 1.21400 1.00071 0.90679 0.98410 1.21392 0.95777 1.01693 0.98917 1.17859 0.96272 0.80830 0.99455 1.91440 1.85603 1.48442 1.87446 0.92684 0.93343 0.93743 0.95156 0.93989 0.94362 0.93371 0.93375 0.93803 0.93360 0.92822 0.75371 0.89951 0.91334 0.91534 0.85844 0.82869 0.81668 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.06 9.88 71.98 0.71 -4.35 16 2 C 0.14 5.31 5.69 86.38 0.49 5.80 16 3 N -0.59 -25.80 1.85 -678.06 -1.26 -27.06 16 4 C -0.26 -12.46 9.22 84.03 0.77 -11.69 16 5 H 0.06 3.04 7.89 -2.91 -0.02 3.02 16 6 C -0.03 -1.59 4.86 84.86 0.41 -1.18 16 7 N -0.92 -49.15 10.66 21.65 0.23 -48.92 16 8 Si 0.95 41.70 29.59 68.60 2.03 43.73 16 9 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.30 -13.19 7.11 99.48 0.71 -12.49 16 11 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 12 C 0.18 7.75 1.93 44.99 0.09 7.84 16 13 H 0.07 3.39 6.02 -2.39 -0.01 3.37 16 14 C -0.14 -5.49 9.05 71.98 0.65 -4.84 16 15 C 0.12 4.41 4.34 86.38 0.37 4.79 16 16 N -0.70 -24.77 3.94 -463.07 -1.82 -26.59 16 17 C 0.51 17.66 6.83 87.66 0.60 18.26 16 18 O -0.58 -22.95 15.11 -3.02 -0.05 -22.99 16 19 C -0.07 -2.01 2.89 -12.28 -0.04 -2.05 16 20 H 0.10 2.92 7.13 -2.39 -0.02 2.90 16 21 C -0.13 -3.13 8.90 71.98 0.64 -2.49 16 22 C -0.11 -2.99 4.40 -19.82 -0.09 -3.08 16 23 C -0.07 -1.75 7.93 22.26 0.18 -1.57 16 24 C -0.13 -2.44 10.04 22.27 0.22 -2.21 16 25 C -0.09 -1.43 10.04 22.26 0.22 -1.21 16 26 C -0.16 -3.17 10.03 22.31 0.22 -2.95 16 27 C 0.07 1.96 7.25 22.38 0.16 2.12 16 28 F -0.15 -4.25 16.20 44.97 0.73 -3.52 16 29 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.05 1.62 5.06 -2.39 -0.01 1.61 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.03 1.21 8.09 -2.39 -0.02 1.19 16 33 H 0.04 1.55 6.41 -2.39 -0.02 1.54 16 34 H 0.25 13.15 8.31 -92.71 -0.77 12.38 16 35 H 0.05 2.25 7.45 -2.39 -0.02 2.23 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.04 1.62 6.65 -2.39 -0.02 1.61 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 2.04 7.04 -2.39 -0.02 2.02 16 40 H 0.41 14.95 7.28 -92.71 -0.67 14.27 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.07 1.72 7.56 -2.39 -0.02 1.70 16 43 H 0.07 1.52 7.38 -2.39 -0.02 1.51 16 44 H 0.12 3.08 7.52 -2.91 -0.02 3.05 16 45 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 46 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -59.46 376.60 5.79 -53.67 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 0.30 Total: 30.48 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 5.63 Total: 1.21 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -2.85 Total: -102.57 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.05 Total: -22.99 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.73 Total: -3.52 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -59.46 5.79 -53.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155910654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.086 kcal (2) G-P(sol) polarization free energy of solvation -59.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds