Wall clock time and date at job start Tue Mar 31 2020 13:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38679 * 119.27396 * 2 1 4 4 C 1.38010 * 119.62821 * 179.77062 * 3 2 1 5 5 C 1.41004 * 118.27751 * 0.49309 * 4 3 2 6 6 C 1.41021 * 120.70590 * 179.72880 * 5 4 3 7 7 H 1.08007 * 119.99756 * 209.40913 * 6 5 4 8 8 C 1.39946 * 120.00038 * 29.41225 * 6 5 4 9 9 N 1.30871 * 119.99880 * 12.75999 * 8 6 5 10 10 Si 1.86793 * 120.00243 * 192.75950 * 8 6 5 11 11 H 1.48501 * 109.47454 * 89.99960 * 10 8 6 12 12 H 1.48502 * 109.47199 * 210.00116 * 10 8 6 13 13 H 1.48505 * 109.46998 * 329.99869 * 10 8 6 14 14 C 1.41707 * 118.58911 * 359.74991 * 5 4 3 15 15 N 1.38095 * 119.90736 * 180.02562 * 14 5 4 16 16 C 1.46500 * 120.00367 * 179.97438 * 15 14 5 17 17 C 1.52997 * 109.47367 * 179.97438 * 16 15 14 18 18 P 1.82300 * 109.47144 * 185.00633 * 17 16 15 19 19 C 1.82294 * 101.99770 * 78.54730 * 18 17 16 20 20 C 1.53003 * 109.46808 * 190.89311 * 19 18 17 21 21 C 1.52999 * 109.47345 * 310.89688 * 19 18 17 22 22 C 1.82303 * 101.99970 * 183.76636 * 18 17 16 23 23 C 1.52999 * 109.47038 * 171.97939 * 22 18 17 24 24 C 1.53001 * 109.47095 * 291.98077 * 22 18 17 25 25 N 1.31967 * 119.27702 * 180.27110 * 2 1 3 26 26 H 1.09003 * 109.46599 * 269.72306 * 1 2 3 27 27 H 1.09001 * 109.47181 * 149.73286 * 1 2 3 28 28 H 1.08996 * 109.47402 * 29.72739 * 1 2 3 29 29 H 1.08004 * 120.19009 * 0.02562 * 3 2 1 30 30 H 1.08000 * 120.86162 * 180.21683 * 4 3 2 31 31 H 0.97005 * 120.00182 * 180.02562 * 9 8 6 32 32 H 0.97000 * 119.99665 * 359.97438 * 15 14 5 33 33 H 1.09004 * 109.46712 * 300.00364 * 16 15 14 34 34 H 1.09001 * 109.46953 * 59.99903 * 16 15 14 35 35 H 1.08996 * 109.46908 * 305.00911 * 17 16 15 36 36 H 1.09002 * 109.47133 * 65.00714 * 17 16 15 37 37 H 1.09002 * 109.47188 * 70.90001 * 19 18 17 38 38 H 1.09009 * 109.46936 * 62.83510 * 20 19 18 39 39 H 1.09005 * 109.47187 * 182.82631 * 20 19 18 40 40 H 1.08995 * 109.47500 * 302.83040 * 20 19 18 41 41 H 1.08991 * 109.47026 * 70.03140 * 21 19 18 42 42 H 1.09001 * 109.47034 * 190.03402 * 21 19 18 43 43 H 1.09001 * 109.46948 * 310.02940 * 21 19 18 44 44 H 1.08997 * 109.46813 * 51.97643 * 22 18 17 45 45 H 1.09001 * 109.47126 * 68.85937 * 23 22 18 46 46 H 1.09001 * 109.46794 * 188.85476 * 23 22 18 47 47 H 1.08993 * 109.46984 * 308.86012 * 23 22 18 48 48 H 1.08994 * 109.47454 * 171.78602 * 24 22 18 49 49 H 1.09001 * 109.46828 * 291.78659 * 24 22 18 50 50 H 1.09000 * 109.47112 * 51.77609 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2182 0.0048 5 6 4.2409 -0.0194 -0.0011 6 6 5.6502 -0.0704 -0.0023 7 1 6.1600 -0.9022 -0.4657 8 6 6.3881 0.9568 0.5968 9 7 5.7897 1.8278 1.3689 10 14 8.2270 1.0846 0.2947 11 1 8.4751 1.9377 -0.8952 12 1 8.8830 1.6885 1.4822 13 1 8.7849 -0.2710 0.0569 14 6 3.4737 -1.2108 -0.0062 15 7 4.1074 -2.4378 -0.0115 16 6 3.3164 -3.6708 -0.0163 17 6 4.2550 -4.8790 -0.0223 18 15 3.2757 -6.4086 -0.1781 19 6 2.8935 -6.4340 -1.9604 20 6 1.8434 -7.5107 -2.2415 21 6 2.3501 -5.0682 -2.3850 22 6 4.5599 -7.6959 -0.0475 23 6 3.8960 -9.0714 0.0421 24 6 5.4614 -7.6442 -1.2827 25 7 2.1524 -1.1511 -0.0054 26 1 -0.3632 -0.0050 1.0277 27 1 -0.3633 -0.8876 -0.5180 28 1 -0.3634 0.8924 -0.5096 29 1 1.6364 2.1399 0.0004 30 1 4.1135 2.1487 0.0084 31 1 6.3011 2.5400 1.7839 32 1 5.0764 -2.4831 -0.0121 33 1 2.6880 -3.7027 0.8739 34 1 2.6873 -3.6955 -0.9061 35 1 4.9428 -4.8005 -0.8642 36 1 4.8216 -4.9036 0.9086 37 1 3.8003 -6.6552 -2.5233 38 1 0.9198 -7.2627 -1.7183 39 1 1.6517 -7.5601 -3.3134 40 1 2.2105 -8.4760 -1.8931 41 1 3.1530 -4.3318 -2.3530 42 1 1.9566 -5.1331 -3.3994 43 1 1.5533 -4.7668 -1.7049 44 1 5.1586 -7.5224 0.8467 45 1 3.4280 -9.3119 -0.9125 46 1 4.6490 -9.8236 0.2772 47 1 3.1381 -9.0587 0.8253 48 1 6.3120 -8.3106 -1.1399 49 1 4.8954 -7.9600 -2.1590 50 1 5.8189 -6.6249 -1.4291 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162363645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:58 Heat of formation + Delta-G solvation = 20.365610 kcal Electronic energy + Delta-G solvation = -25253.424753 eV Core-core repulsion = 21973.334133 eV Total energy + Delta-G solvation = -3280.090621 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.187 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.43206 -37.21909 -36.15212 -35.89937 -34.40520 -32.91380 -32.24377 -30.13943 -29.18266 -28.15420 -27.79227 -25.75935 -24.23512 -22.61258 -22.54595 -21.98384 -21.73622 -19.13723 -17.93451 -17.55416 -17.04788 -16.59882 -16.21465 -16.10774 -15.61483 -15.36555 -15.13119 -14.91989 -14.44441 -14.19083 -14.08054 -14.02413 -13.74485 -13.65546 -13.47173 -13.31547 -13.18277 -13.16864 -13.04364 -12.90933 -12.68854 -12.51611 -12.46622 -12.30916 -12.19320 -12.07228 -11.73944 -11.68689 -11.59140 -11.13209 -11.10791 -10.63173 -10.42538 -9.93528 -9.73041 -8.84842 -8.63237 -8.26430 -6.17257 0.90393 1.21252 1.33140 1.44331 1.44663 1.46092 2.17639 2.18448 2.26045 2.79741 3.00575 3.75900 3.93660 4.06955 4.08823 4.11265 4.19471 4.22238 4.28253 4.37141 4.46430 4.53612 4.61529 4.66707 4.75500 4.75696 4.80427 4.87333 4.88233 4.92867 4.99031 5.04651 5.05517 5.08105 5.08298 5.13540 5.17007 5.21998 5.25163 5.26469 5.35626 5.42142 5.44902 5.58045 5.79921 5.89016 6.13170 6.40064 6.76920 6.81075 6.90114 7.14594 7.93153 8.40366 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.003674 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.511296 B = 7618.781169 C = 9405.225145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.034 3.966 3 C -0.207 4.207 4 C -0.134 4.134 5 C -0.011 4.011 6 C -0.488 4.488 7 H 0.070 0.930 8 C 0.034 3.966 9 N -0.839 5.839 10 Si 0.978 3.022 11 H -0.266 1.266 12 H -0.270 1.270 13 H -0.262 1.262 14 C 0.305 3.695 15 N -0.731 5.731 16 C 0.133 3.867 17 C -0.293 4.293 18 P 0.452 4.548 19 C -0.261 4.261 20 C -0.141 4.141 21 C -0.152 4.152 22 C -0.262 4.262 23 C -0.141 4.141 24 C -0.163 4.163 25 N -0.536 5.536 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.284 0.716 32 H 0.396 0.604 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.057 0.943 47 H 0.084 0.916 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.235 -18.025 -3.030 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 C -0.229 4.229 4 C -0.161 4.161 5 C -0.017 4.017 6 C -0.520 4.520 7 H 0.088 0.912 8 C -0.179 4.179 9 N -0.467 5.467 10 Si 0.800 3.200 11 H -0.191 1.191 12 H -0.195 1.195 13 H -0.186 1.186 14 C 0.066 3.934 15 N -0.370 5.370 16 C 0.010 3.990 17 C -0.313 4.313 18 P 0.405 4.595 19 C -0.261 4.261 20 C -0.197 4.197 21 C -0.209 4.209 22 C -0.262 4.262 23 C -0.198 4.198 24 C -0.220 4.220 25 N -0.255 5.255 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.232 0.768 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.103 0.897 48 H 0.078 0.922 49 H 0.083 0.917 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.625 -18.663 -3.051 19.730 hybrid contribution 4.167 1.885 -1.523 4.820 sum -1.458 -16.778 -4.574 17.451 Atomic orbital electron populations 1.20377 0.87797 1.02492 1.02066 1.20906 0.96981 0.87349 1.04816 1.21507 0.94613 0.98361 1.08422 1.21329 0.93383 0.97506 1.03847 1.18243 0.94714 0.91011 0.97781 1.19265 0.91136 1.07294 1.34296 0.91182 1.26559 1.05032 0.94013 0.92249 1.69865 1.39980 1.13637 1.23211 0.85266 0.76737 0.79351 0.78671 1.19063 1.19492 1.18604 1.18755 0.88448 0.86397 0.99765 1.44032 1.07545 1.01886 1.83537 1.21408 0.93619 0.81664 1.02342 1.26559 1.01254 1.01608 1.01898 1.74676 1.04517 0.81960 0.98303 1.26174 1.00480 0.96928 1.02566 1.21756 0.98943 0.97672 1.01346 1.22022 1.01019 0.96132 1.01681 1.26082 1.00273 1.01331 0.98542 1.21762 1.01119 0.93490 1.03407 1.22108 1.00177 1.00773 0.98928 1.66559 1.07772 1.30207 1.20937 0.91456 0.91556 0.90521 0.86345 0.87716 0.90581 0.76846 0.92997 0.90713 0.93750 0.91063 0.92374 0.90310 0.93000 0.90997 0.94683 0.92472 0.90723 0.90590 0.91798 0.92548 0.89727 0.92183 0.91654 0.94636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.35 10.15 71.24 0.72 -1.63 16 2 C 0.03 1.57 6.79 42.64 0.29 1.86 16 3 C -0.21 -9.94 9.69 22.32 0.22 -9.72 16 4 C -0.13 -7.32 8.76 22.89 0.20 -7.12 16 5 C -0.01 -0.59 5.55 -21.06 -0.12 -0.70 16 6 C -0.49 -26.50 8.43 23.37 0.20 -26.30 16 7 H 0.07 3.65 6.83 -2.91 -0.02 3.63 16 8 C 0.03 1.76 5.23 85.25 0.45 2.20 16 9 N -0.84 -45.26 11.04 21.83 0.24 -45.02 16 10 Si 0.98 39.57 29.58 68.60 2.03 41.59 16 11 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 12 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 13 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 14 C 0.30 15.58 7.52 134.05 1.01 16.59 16 15 N -0.73 -32.22 5.61 -343.65 -1.93 -34.15 16 16 C 0.13 4.66 5.27 86.38 0.46 5.12 16 17 C -0.29 -8.20 4.78 71.98 0.34 -7.86 16 18 P 0.45 8.82 12.43 -40.88 -0.51 8.31 16 19 C -0.26 -5.26 2.78 30.60 0.09 -5.18 16 20 C -0.14 -2.17 9.19 71.98 0.66 -1.51 16 21 C -0.15 -3.75 7.36 71.98 0.53 -3.22 16 22 C -0.26 -4.64 3.24 30.59 0.10 -4.54 16 23 C -0.14 -1.89 9.11 71.98 0.66 -1.23 16 24 C -0.16 -3.16 7.97 71.98 0.57 -2.59 16 25 N -0.54 -26.02 9.44 -179.57 -1.70 -27.71 16 26 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.08 2.21 8.07 -2.39 -0.02 2.19 16 29 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 30 H 0.10 5.95 6.45 -2.91 -0.02 5.93 16 31 H 0.28 13.98 8.30 -92.70 -0.77 13.21 16 32 H 0.40 17.43 6.75 -92.71 -0.63 16.80 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 2.62 3.62 -2.39 -0.01 2.61 16 35 H 0.04 1.34 7.15 -2.39 -0.02 1.33 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 1.28 5.40 -2.39 -0.01 1.26 16 38 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.07 0.91 5.70 -2.39 -0.01 0.90 16 41 H 0.03 1.04 6.14 -2.39 -0.01 1.03 16 42 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 43 H 0.07 1.85 7.16 -2.39 -0.02 1.83 16 44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 0.78 5.78 -2.39 -0.01 0.77 16 46 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.08 0.94 8.13 -2.39 -0.02 0.92 16 48 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.06 1.19 6.37 -2.39 -0.02 1.18 16 50 H 0.03 0.80 6.84 -2.39 -0.02 0.79 16 Total: -1.00 -63.01 389.40 4.81 -58.20 By element: Atomic # 1 Polarization: 44.31 SS G_CDS: 0.30 Total: 44.61 kcal Atomic # 6 Polarization: -52.20 SS G_CDS: 6.37 Total: -45.83 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -3.38 Total: -106.88 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.59 kcal Atomic # 15 Polarization: 8.82 SS G_CDS: -0.51 Total: 8.31 kcal Total: -63.01 4.81 -58.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162363645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.567 kcal (2) G-P(sol) polarization free energy of solvation -63.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds