Wall clock time and date at job start Tue Mar 31 2020 13:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47157 * 2 1 4 4 O 1.42898 * 109.47580 * 120.00184 * 2 1 3 5 5 C 1.35963 * 116.99931 * 85.55962 * 4 2 1 6 6 C 1.38968 * 120.48558 * 354.58832 * 5 4 2 7 7 C 1.38655 * 118.40387 * 180.23631 * 6 5 4 8 8 C 1.50701 * 120.35777 * 179.78448 * 7 6 5 9 9 N 1.46903 * 109.47042 * 269.72385 * 8 7 6 10 10 C 1.46844 * 111.00167 * 66.05035 * 9 8 7 11 11 C 1.53039 * 109.52478 * 185.84210 * 10 9 8 12 12 C 1.53119 * 109.27308 * 300.81546 * 11 10 9 13 13 C 1.53120 * 109.16343 * 57.65869 * 12 11 10 14 14 H 1.08999 * 109.50657 * 62.31890 * 13 12 11 15 15 C 1.50697 * 109.50627 * 182.40321 * 13 12 11 16 16 H 1.07998 * 119.99971 * 119.99857 * 15 13 12 17 17 C 1.37882 * 119.99914 * 299.99713 * 15 13 12 18 18 N 1.31509 * 119.99936 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00032 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47105 * 89.99734 * 19 17 15 21 21 H 1.48495 * 109.47313 * 210.00005 * 19 17 15 22 22 H 1.48510 * 109.46995 * 329.99877 * 19 17 15 23 23 C 1.46853 * 110.99951 * 190.25873 * 9 8 7 24 24 C 1.38132 * 119.27634 * 359.51266 * 7 6 5 25 25 N 1.31934 * 120.91108 * 0.25041 * 24 7 6 26 26 C 1.31973 * 121.74150 * 359.97438 * 25 24 7 27 27 F 1.35100 * 119.68387 * 180.02562 * 26 25 24 28 28 H 1.09002 * 109.47320 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46882 * 299.99988 * 1 2 3 30 30 H 1.08997 * 109.47172 * 59.99973 * 1 2 3 31 31 H 1.09005 * 109.47346 * 240.00244 * 2 1 3 32 32 H 1.09001 * 109.47151 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47101 * 300.00070 * 3 2 1 34 34 H 1.08998 * 109.46910 * 60.00568 * 3 2 1 35 35 H 1.08000 * 120.78966 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.46992 * 149.72869 * 8 7 6 37 37 H 1.08999 * 109.47342 * 29.72050 * 8 7 6 38 38 H 1.08997 * 109.46731 * 65.82077 * 10 9 8 39 39 H 1.09001 * 109.45889 * 305.85225 * 10 9 8 40 40 H 1.09000 * 109.50215 * 60.75331 * 11 10 9 41 41 H 1.09000 * 109.50376 * 180.88262 * 11 10 9 42 42 H 1.09004 * 109.52219 * 177.55894 * 12 11 10 43 43 H 1.08994 * 109.52892 * 297.74885 * 12 11 10 44 44 H 0.96999 * 119.99917 * 180.02562 * 18 17 15 45 45 H 1.08995 * 109.46240 * 54.14130 * 23 9 8 46 46 H 1.08994 * 109.45198 * 294.17235 * 23 9 8 47 47 H 1.07998 * 119.54748 * 180.22866 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.1238 -2.0262 1.0938 6 6 1.6848 -2.7123 -0.0322 7 6 1.8209 -4.0919 -0.0586 8 6 1.3552 -4.8804 -1.2555 9 7 -0.0465 -5.2768 -1.0655 10 6 -0.9288 -4.1030 -1.0558 11 6 -2.3551 -4.5380 -0.7118 12 6 -2.8380 -5.5540 -1.7506 13 6 -1.8752 -6.7443 -1.7748 14 1 -1.8806 -7.2366 -0.8024 15 6 -2.3102 -7.7219 -2.8360 16 1 -1.6447 -7.9659 -3.6508 17 6 -3.5578 -8.3047 -2.7668 18 7 -4.3680 -8.0079 -1.7743 19 14 -4.0968 -9.5169 -4.0818 20 1 -3.7057 -10.8914 -3.6781 21 1 -5.5714 -9.4490 -4.2432 22 1 -3.4415 -9.1739 -5.3696 23 6 -0.4627 -6.2454 -2.0879 24 6 2.3931 -4.7351 1.0216 25 7 2.8049 -4.0555 2.0748 26 6 2.6899 -2.7425 2.1422 27 9 3.1262 -2.0882 3.2408 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.2450 -2.1838 -0.8651 36 1 1.9729 -5.7716 -1.3662 37 1 1.4405 -4.2654 -2.1514 38 1 -0.9195 -3.6334 -2.0394 39 1 -0.5767 -3.3903 -0.3100 40 1 -2.3675 -4.9952 0.2776 41 1 -3.0127 -3.6687 -0.7201 42 1 -3.8373 -5.8992 -1.4853 43 1 -2.8628 -5.0855 -2.7344 44 1 -5.2456 -8.4182 -1.7254 45 1 0.2278 -7.0886 -2.0918 46 1 -0.4556 -5.7657 -3.0666 47 1 2.5046 -5.8092 1.0041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238601649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:54 Heat of formation + Delta-G solvation = -68.894412 kcal Electronic energy + Delta-G solvation = -27903.470441 eV Core-core repulsion = 24000.054062 eV Total energy + Delta-G solvation = -3903.416379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.01119 -41.88421 -40.03573 -39.39254 -35.98156 -34.35034 -34.19800 -32.72912 -31.58314 -31.14630 -28.23779 -27.33138 -26.90784 -25.42442 -24.14181 -23.31041 -22.57461 -22.01426 -20.34625 -19.45418 -18.83647 -18.49568 -18.32527 -17.45461 -16.82922 -16.39207 -16.20112 -15.93498 -15.86707 -15.57946 -15.22820 -14.94446 -14.71059 -14.61118 -14.37988 -14.14932 -14.00813 -13.80318 -13.45873 -13.40972 -13.23205 -13.14749 -12.89179 -12.85220 -12.68921 -12.53570 -12.35289 -12.03514 -11.83573 -11.77585 -11.69648 -11.38550 -10.99432 -10.81479 -10.69740 -10.59176 -10.34657 -9.43652 -9.11497 -8.05190 -6.18970 -0.22308 0.00621 1.43283 1.44510 1.53667 1.83989 2.36650 2.46367 2.58630 3.18967 3.22498 3.33720 3.46276 3.73431 3.82531 3.89092 3.93465 4.10701 4.17153 4.25401 4.37354 4.47260 4.53296 4.59305 4.63909 4.68492 4.69861 4.79046 4.81627 4.82075 4.86263 4.91701 5.00702 5.03848 5.11727 5.20757 5.22037 5.26451 5.34694 5.41103 5.55092 5.66865 5.98273 6.11445 6.14950 6.24179 6.32200 6.47993 6.54869 6.95098 7.49262 8.99198 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.002956 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.320652 B = 9471.162607 C =10208.083272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.065 3.935 3 C -0.146 4.146 4 O -0.312 6.312 5 C 0.068 3.932 6 C -0.128 4.128 7 C -0.082 4.082 8 C 0.097 3.903 9 N -0.545 5.545 10 C 0.066 3.934 11 C -0.111 4.111 12 C -0.103 4.103 13 C 0.052 3.948 14 H -0.006 1.006 15 C -0.532 4.532 16 H 0.055 0.945 17 C 0.013 3.987 18 N -0.917 5.917 19 Si 0.952 3.048 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.083 3.917 24 C 0.110 3.890 25 N -0.497 5.497 26 C 0.247 3.753 27 F -0.120 7.120 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.170 0.830 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.037 0.963 39 H 0.078 0.922 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.026 0.974 44 H 0.258 0.742 45 H 0.066 0.934 46 H 0.024 0.976 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.209 17.340 0.298 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.010 3.990 3 C -0.203 4.203 4 O -0.226 6.226 5 C 0.018 3.982 6 C -0.155 4.155 7 C -0.085 4.085 8 C -0.031 4.031 9 N -0.269 5.269 10 C -0.062 4.062 11 C -0.149 4.149 12 C -0.141 4.141 13 C 0.033 3.967 14 H 0.013 0.987 15 C -0.571 4.571 16 H 0.074 0.926 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.778 3.222 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.044 4.044 24 C -0.047 4.047 25 N -0.211 5.211 26 C 0.092 3.908 27 F -0.100 7.100 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.188 0.812 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.042 0.958 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 13.427 16.832 1.709 21.600 hybrid contribution -1.042 -0.103 -1.547 1.868 sum 12.385 16.729 0.162 20.816 Atomic orbital electron populations 1.22424 0.94104 1.03016 1.04368 1.22895 0.95131 0.94658 0.86292 1.21892 1.02088 0.92024 1.04255 1.86222 1.81199 1.14281 1.40893 1.19610 0.98758 0.85110 0.94693 1.21803 1.01220 0.94460 0.98017 1.20761 0.96853 0.93265 0.97573 1.21036 0.89623 0.99517 0.92926 1.61906 1.01537 1.13757 1.49722 1.22065 0.92589 0.91792 0.99706 1.21576 0.95862 0.98571 0.98919 1.21453 1.01465 0.95435 0.95793 1.18588 0.90602 0.92711 0.94803 0.98738 1.21545 1.00455 1.25050 1.10026 0.92648 1.25710 0.96945 0.98344 0.97583 1.70042 1.08868 1.44286 1.32437 0.85656 0.77145 0.79467 0.79967 1.20380 1.21278 1.19047 1.21994 0.97560 0.93836 0.90986 1.22651 0.94612 1.00868 0.86563 1.67094 1.19449 1.05783 1.28774 1.17679 1.01403 0.87320 0.84359 1.91573 1.87545 1.79167 1.51689 0.92775 0.91710 0.88452 0.89461 0.91707 0.87926 0.91688 0.81244 0.87803 0.92012 0.94480 0.90424 0.93881 0.91542 0.92786 0.95499 0.93241 0.91551 0.95763 0.79716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 9.21 71.98 0.66 -1.81 16 2 C 0.07 0.94 2.85 30.59 0.09 1.02 16 3 C -0.15 -1.53 9.56 71.98 0.69 -0.84 16 4 O -0.31 -6.87 9.67 -93.14 -0.90 -7.77 16 5 C 0.07 1.62 6.63 22.63 0.15 1.77 16 6 C -0.13 -2.61 6.26 22.54 0.14 -2.47 16 7 C -0.08 -1.81 4.89 -19.79 -0.10 -1.91 16 8 C 0.10 2.17 5.14 85.56 0.44 2.61 16 9 N -0.54 -16.93 4.65 -900.92 -4.19 -21.12 16 10 C 0.07 1.96 5.19 86.33 0.45 2.41 16 11 C -0.11 -4.09 6.09 30.65 0.19 -3.90 16 12 C -0.10 -4.74 5.02 30.67 0.15 -4.58 16 13 C 0.05 2.50 2.26 -11.49 -0.03 2.48 16 14 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 15 C -0.53 -28.34 8.56 25.60 0.22 -28.12 16 16 H 0.06 2.86 7.74 -2.91 -0.02 2.83 16 17 C 0.01 0.69 5.30 84.66 0.45 1.14 16 18 N -0.92 -52.64 11.35 21.45 0.24 -52.40 16 19 Si 0.95 42.77 29.54 68.60 2.03 44.80 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 23 C 0.08 3.14 4.68 86.32 0.40 3.54 16 24 C 0.11 2.69 10.85 84.65 0.92 3.60 16 25 N -0.50 -14.24 10.37 -196.57 -2.04 -16.28 16 26 C 0.25 7.00 8.43 84.86 0.72 7.72 16 27 F -0.12 -3.62 17.14 44.97 0.77 -2.85 16 28 H 0.05 0.87 6.98 -2.39 -0.02 0.85 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.02 6.31 -2.38 -0.02 1.00 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 0.60 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.17 2.64 5.56 -2.91 -0.02 2.63 16 36 H 0.10 2.08 7.93 -2.39 -0.02 2.06 16 37 H 0.06 1.19 8.07 -2.39 -0.02 1.18 16 38 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 2.02 5.76 -2.39 -0.01 2.00 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.05 2.87 6.15 -2.39 -0.01 2.86 16 43 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 45 H 0.07 2.42 8.01 -2.39 -0.02 2.40 16 46 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.19 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -64.38 373.41 2.41 -61.97 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.96 Total: 10.99 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 5.54 Total: -17.34 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -5.98 Total: -89.80 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.90 Total: -7.77 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.77 Total: -2.85 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -64.38 2.41 -61.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238601649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.928 kcal (2) G-P(sol) polarization free energy of solvation -64.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds