Wall clock time and date at job start Tue Mar 31 2020 12:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53011 * 109.46832 * 2 1 4 4 H 1.08998 * 109.46756 * 303.52413 * 3 2 1 5 5 C 1.50703 * 109.46809 * 183.52209 * 3 2 1 6 6 H 1.08000 * 119.99902 * 239.99976 * 5 3 2 7 7 C 1.37875 * 119.99848 * 59.99988 * 5 3 2 8 8 N 1.31515 * 120.00269 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00057 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46630 * 90.00243 * 9 7 5 11 11 H 1.48493 * 109.47383 * 210.00184 * 9 7 5 12 12 H 1.48496 * 109.47021 * 330.00780 * 9 7 5 13 13 N 1.46899 * 109.46795 * 63.52704 * 3 2 1 14 14 C 1.46906 * 110.99393 * 206.34302 * 13 3 2 15 15 C 1.53005 * 109.46807 * 174.18503 * 14 13 3 16 16 C 1.50703 * 109.54356 * 65.98840 * 15 14 13 17 17 C 1.38234 * 119.58968 * 284.72845 * 16 15 14 18 18 C 1.38587 * 119.18667 * 179.77523 * 17 16 15 19 19 C 1.38885 * 118.39885 * 0.48779 * 18 17 16 20 20 F 1.35100 * 120.44094 * 179.77740 * 19 18 17 21 21 C 1.38424 * 119.11271 * 359.75072 * 19 18 17 22 22 N 1.31848 * 119.58552 * 104.99693 * 16 15 14 23 23 C 1.53182 * 109.54207 * 305.72198 * 15 14 13 24 24 C 1.53089 * 109.16460 * 297.11621 * 23 15 14 25 25 O 1.42902 * 109.41171 * 302.38987 * 24 23 15 26 26 C 1.42903 * 114.09864 * 61.16343 * 25 24 23 27 27 C 1.53098 * 109.41262 * 298.83814 * 26 25 24 28 28 H 1.09002 * 109.47333 * 54.79339 * 1 2 3 29 29 H 1.09007 * 109.47109 * 174.78681 * 1 2 3 30 30 H 1.08997 * 109.47588 * 294.79197 * 1 2 3 31 31 H 1.09000 * 109.47312 * 240.00447 * 2 1 3 32 32 H 1.09000 * 109.47227 * 120.00018 * 2 1 3 33 33 H 0.97004 * 120.00009 * 179.97438 * 8 7 5 34 34 H 1.00898 * 110.99880 * 82.38885 * 13 3 2 35 35 H 1.08996 * 109.47154 * 294.18429 * 14 13 3 36 36 H 1.09003 * 109.47139 * 54.18568 * 14 13 3 37 37 H 1.07998 * 120.40404 * 359.97438 * 17 16 15 38 38 H 1.07997 * 120.80250 * 180.21740 * 18 17 16 39 39 H 1.07993 * 119.63094 * 180.02562 * 21 19 18 40 40 H 1.08997 * 109.52052 * 57.02247 * 23 15 14 41 41 H 1.09000 * 109.52018 * 177.20711 * 23 15 14 42 42 H 1.09002 * 109.48178 * 182.41240 * 24 23 15 43 43 H 1.08996 * 109.48379 * 62.37246 * 24 23 15 44 44 H 1.09003 * 109.48371 * 178.85600 * 26 25 24 45 45 H 1.08994 * 109.49110 * 58.82250 * 26 25 24 46 46 H 1.08999 * 109.52078 * 297.70363 * 27 26 25 47 47 H 1.09003 * 109.52212 * 177.51311 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6258 1.9743 -0.8567 5 6 3.5444 1.4435 -0.0873 6 1 4.1307 1.8948 0.6995 7 6 4.1723 0.8682 -1.1716 8 7 3.4584 0.3191 -2.1299 9 14 6.0372 0.8699 -1.2802 10 1 6.5716 -0.3562 -0.6348 11 1 6.4500 0.8987 -2.7063 12 1 6.5724 2.0683 -0.5855 13 7 1.6210 2.1100 1.2398 14 6 1.5156 3.5624 1.0460 15 6 0.9401 4.2050 2.3097 16 6 1.9175 4.0464 3.4458 17 6 2.0545 2.8163 4.0615 18 6 2.9591 2.6786 5.1024 19 6 3.6895 3.7929 5.4945 20 9 4.5793 3.7063 6.5074 21 6 3.4939 4.9932 4.8333 22 7 2.6272 5.0838 3.8436 23 6 -0.3844 3.5263 2.6721 24 6 -1.3938 3.7600 1.5450 25 8 -1.5609 5.1645 1.3409 26 6 -0.3651 5.8442 0.9535 27 6 0.6857 5.6942 2.0568 28 1 -0.3634 0.5925 -0.8397 29 1 -0.3634 -1.0235 -0.0934 30 1 -0.3634 0.4309 0.9329 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9002 -0.0854 -2.8929 34 1 2.2492 1.8910 1.9984 35 1 2.5045 3.9750 0.8466 36 1 0.8584 3.7695 0.2014 37 1 1.4662 1.9722 3.7333 38 1 3.0897 1.7288 5.5996 39 1 4.0577 5.8648 5.1311 40 1 -0.2222 2.4560 2.7997 41 1 -0.7692 3.9504 3.5995 42 1 -2.3513 3.3157 1.8167 43 1 -1.0268 3.3005 0.6273 44 1 -0.5816 6.9013 0.7990 45 1 0.0154 5.4120 0.0281 46 1 0.3224 6.1621 2.9718 47 1 1.6130 6.1743 1.7444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:53 Heat of formation + Delta-G solvation = -64.872612 kcal Electronic energy + Delta-G solvation = -29004.790968 eV Core-core repulsion = 25101.548988 eV Total energy + Delta-G solvation = -3903.241981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.98753 -40.83151 -38.97475 -36.39590 -34.64437 -32.65839 -31.99557 -30.88803 -30.75453 -30.12370 -26.91828 -25.42015 -24.48757 -23.81002 -22.78676 -22.42657 -22.19697 -19.59676 -18.63951 -17.67756 -17.11432 -16.84649 -16.64842 -15.82676 -15.70488 -15.37274 -14.93934 -14.80757 -14.53872 -14.09589 -14.05282 -13.79815 -13.58829 -13.19995 -13.02350 -12.90331 -12.66161 -12.42308 -12.21535 -11.95239 -11.52086 -11.34327 -11.14837 -11.07961 -10.98727 -10.89904 -10.68607 -10.50852 -10.18538 -10.08246 -9.88774 -9.67487 -9.59288 -9.47897 -9.19637 -9.12804 -8.74451 -8.44138 -7.38478 -6.06765 -4.19445 0.92115 1.11362 3.21823 3.29594 3.32468 3.61505 3.97322 4.09939 4.24633 4.33952 4.54168 4.70709 4.80127 4.96257 5.07635 5.15355 5.20576 5.27621 5.42496 5.47779 5.53392 5.60430 5.74687 5.81559 5.85891 5.90304 5.97646 6.02220 6.10216 6.22976 6.24513 6.32952 6.40996 6.43704 6.44869 6.55660 6.63861 6.67058 7.04389 7.08785 7.35103 7.41089 7.50006 7.70291 7.87107 7.98584 8.05145 8.22957 8.53005 8.91712 9.48708 10.93564 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008777 B = 0.005662 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.345271 B = 4944.186546 C = 6818.901840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.032 0.968 5 C -0.546 4.546 6 H 0.050 0.950 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.886 3.114 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.688 5.688 14 C 0.075 3.925 15 C -0.008 4.008 16 C 0.142 3.858 17 C -0.132 4.132 18 C -0.107 4.107 19 C 0.034 3.966 20 F -0.136 7.136 21 C 0.073 3.927 22 N -0.454 5.454 23 C -0.130 4.130 24 C 0.063 3.937 25 O -0.389 6.389 26 C 0.057 3.943 27 C -0.129 4.129 28 H 0.036 0.964 29 H 0.024 0.976 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.030 0.970 33 H 0.262 0.738 34 H 0.325 0.675 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.158 0.842 38 H 0.146 0.854 39 H 0.163 0.837 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 6.819 11.308 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.585 4.585 6 H 0.068 0.932 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.714 3.286 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.318 5.318 14 C -0.055 4.055 15 C -0.009 4.009 16 C 0.004 3.996 17 C -0.152 4.152 18 C -0.133 4.133 19 C 0.012 3.988 20 F -0.115 7.115 21 C -0.085 4.085 22 N -0.161 5.161 23 C -0.168 4.168 24 C -0.013 4.013 25 O -0.308 6.308 26 C -0.019 4.019 27 C -0.167 4.167 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.143 0.857 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.175 0.825 38 H 0.164 0.836 39 H 0.180 0.820 40 H 0.112 0.888 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.899 7.498 10.644 14.734 hybrid contribution 2.937 -0.830 0.498 3.092 sum -3.962 6.668 11.141 13.575 Atomic orbital electron populations 1.21690 0.98923 0.98340 1.00323 1.21496 0.92066 0.99144 1.01712 1.19134 0.92574 0.91089 0.86300 0.95002 1.21811 0.92648 1.37942 1.06109 0.93158 1.24895 0.97885 0.94937 0.95574 1.69867 1.34920 1.37720 1.09619 0.86699 0.86235 0.78406 0.77294 1.20619 1.21107 1.20150 1.61088 1.54944 1.05838 1.09962 1.21887 0.99061 0.90489 0.94092 1.19678 0.92646 0.96194 0.92377 1.21277 0.94539 0.88628 0.95126 1.22124 0.98538 0.99568 0.94929 1.21687 0.95549 0.98438 0.97636 1.18821 0.93152 0.96616 0.90194 1.91497 1.65807 1.96919 1.57244 1.22818 0.96834 0.96125 0.92769 1.67525 1.05045 1.32084 1.11475 1.22137 0.93556 1.02515 0.98612 1.22570 0.99040 0.81505 0.98199 1.87867 1.32607 1.20969 1.89394 1.22657 0.85529 0.97232 0.96513 1.22017 0.99856 0.94997 0.99847 0.94441 0.95697 0.93458 0.89209 0.95164 0.92828 0.85675 0.94975 0.90736 0.82491 0.83608 0.82022 0.88810 0.92258 0.89315 0.91791 0.89282 0.92705 0.91146 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.72 37.15 0.36 -2.16 16 2 C -0.11 -2.34 5.44 -26.73 -0.15 -2.49 16 3 C 0.22 4.94 1.99 -68.86 -0.14 4.81 16 4 H 0.03 0.82 7.68 -51.93 -0.40 0.42 16 5 C -0.55 -14.12 8.50 -34.44 -0.29 -14.41 16 6 H 0.05 1.33 7.72 -52.49 -0.41 0.92 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 8 N -0.88 -24.18 11.30 55.43 0.63 -23.55 16 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.69 -12.58 4.28 -107.94 -0.46 -13.04 16 14 C 0.08 1.28 3.89 -3.82 -0.01 1.27 16 15 C -0.01 -0.11 0.50 -155.47 -0.08 -0.18 16 16 C 0.14 2.05 5.50 -82.58 -0.45 1.60 16 17 C -0.13 -1.75 7.37 -39.45 -0.29 -2.04 16 18 C -0.11 -1.32 10.16 -39.21 -0.40 -1.72 16 19 C 0.03 0.43 7.35 -39.27 -0.29 0.15 16 20 F -0.14 -1.74 17.28 2.25 0.04 -1.70 16 21 C 0.07 0.95 11.17 -17.47 -0.20 0.75 16 22 N -0.45 -6.59 9.10 -9.42 -0.09 -6.67 16 23 C -0.13 -1.67 4.29 -26.59 -0.11 -1.79 16 24 C 0.06 0.83 6.57 37.20 0.24 1.07 16 25 O -0.39 -5.48 10.77 -35.23 -0.38 -5.86 16 26 C 0.06 0.73 6.57 37.21 0.24 0.98 16 27 C -0.13 -1.71 4.19 -26.59 -0.11 -1.82 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.80 7.86 -51.93 -0.41 0.39 16 31 H 0.09 2.28 5.98 -51.93 -0.31 1.97 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.33 6.01 5.47 -39.29 -0.22 5.80 16 35 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 36 H 0.07 1.29 4.80 -51.93 -0.25 1.04 16 37 H 0.16 1.98 5.74 -52.49 -0.30 1.67 16 38 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 39 H 0.16 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.09 1.21 6.08 -51.93 -0.32 0.89 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.92 6.74 -51.93 -0.35 0.57 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.05 0.73 6.47 -51.93 -0.34 0.39 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.08 1.10 7.97 -51.93 -0.41 0.69 16 LS Contribution 364.19 15.07 5.49 5.49 Total: -1.00 -27.41 364.19 -8.63 -36.04 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.07 Total: 7.70 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -1.77 Total: -14.24 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.08 Total: -43.26 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.38 Total: -5.86 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.41 -8.63 -36.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.836 kcal (2) G-P(sol) polarization free energy of solvation -27.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds