Wall clock time and date at job start Tue Mar 31 2020 13:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47118 * 2 1 4 4 C 1.53002 * 109.47467 * 239.99893 * 2 1 3 5 5 N 1.46500 * 109.46955 * 64.99842 * 4 2 1 6 6 C 1.36932 * 120.00125 * 180.02562 * 5 4 2 7 7 H 1.08008 * 119.99647 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00354 * 179.97438 * 6 5 4 9 9 N 1.31615 * 119.99962 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00075 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47393 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47192 * 119.99889 * 10 8 6 13 13 H 1.48503 * 109.47187 * 239.99758 * 10 8 6 14 14 C 1.53002 * 109.47401 * 119.99413 * 2 1 3 15 15 N 1.46496 * 109.47547 * 295.00353 * 14 2 1 16 16 C 1.34774 * 120.00345 * 179.97438 * 15 14 2 17 17 O 1.21283 * 119.99804 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00271 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.46884 * 294.50969 * 18 16 15 20 20 C 1.53001 * 109.47199 * 54.50981 * 18 16 15 21 21 C 1.50698 * 109.47081 * 174.51035 * 18 16 15 22 22 C 1.38261 * 119.98921 * 294.11518 * 21 18 16 23 23 C 1.38232 * 120.05276 * 179.72991 * 22 21 18 24 24 C 1.38218 * 120.02001 * 0.54482 * 23 22 21 25 25 C 1.38436 * 119.97669 * 359.72343 * 24 23 22 26 26 F 1.35103 * 120.02292 * 180.02562 * 25 24 23 27 27 C 1.38180 * 119.98540 * 114.39139 * 21 18 16 28 28 H 1.08993 * 109.47291 * 60.00403 * 1 2 3 29 29 H 1.09004 * 109.47064 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47167 * 299.99682 * 1 2 3 31 31 H 1.08997 * 109.47608 * 185.00033 * 4 2 1 32 32 H 1.08996 * 109.46922 * 304.99684 * 4 2 1 33 33 H 0.96994 * 120.00259 * 359.97438 * 5 4 2 34 34 H 0.96995 * 120.00194 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.46714 * 55.00703 * 14 2 1 36 36 H 1.09004 * 109.47510 * 174.99553 * 14 2 1 37 37 H 0.97000 * 119.99917 * 359.97438 * 15 14 2 38 38 H 1.09002 * 109.47148 * 60.00501 * 19 18 16 39 39 H 1.09001 * 109.46916 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.47406 * 299.99933 * 19 18 16 41 41 H 1.09001 * 109.46965 * 59.99915 * 20 18 16 42 42 H 1.09001 * 109.47212 * 180.02562 * 20 18 16 43 43 H 1.08998 * 109.47047 * 300.00115 * 20 18 16 44 44 H 1.07993 * 119.97574 * 359.97438 * 22 21 18 45 45 H 1.07997 * 119.98594 * 180.27303 * 23 22 21 46 46 H 1.07997 * 120.01025 * 179.75261 * 24 23 22 47 47 H 1.08001 * 120.01495 * 359.97134 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4424 6 6 2.0011 -0.4208 -3.6855 7 1 2.5615 -1.3386 -3.7864 8 6 1.6334 0.2958 -4.8161 9 7 0.9492 1.4134 -4.6932 10 14 2.1085 -0.3269 -6.5120 11 1 2.8687 -1.5955 -6.3786 12 1 0.8812 -0.5666 -7.3130 13 1 2.9537 0.6868 -7.1927 14 6 2.0400 -0.7211 1.2493 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4134 3.6660 17 8 2.6257 -1.4435 3.7793 18 6 1.5965 0.3646 4.8933 19 6 2.3154 1.7152 4.8972 20 6 0.0835 0.5922 4.8832 21 6 1.9794 -0.4118 6.1268 22 6 1.3601 -1.6162 6.4053 23 6 1.7143 -2.3322 7.5334 24 6 2.6803 -1.8392 8.3903 25 6 3.2971 -0.6308 8.1155 26 9 4.2418 -0.1482 8.9522 27 6 2.9453 0.0830 6.9821 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1263 -0.7995 -1.2056 32 1 1.6055 -1.7198 -1.2951 33 1 1.1482 0.8589 -2.3518 34 1 0.6920 1.9139 -5.4832 35 1 1.6055 -1.7198 1.2952 36 1 3.1264 -0.7994 1.2056 37 1 1.1489 0.8595 2.3518 38 1 2.0383 2.2768 4.0050 39 1 2.0263 2.2781 5.7847 40 1 3.3932 1.5531 4.9044 41 1 -0.4286 -0.3700 4.8804 42 1 -0.2051 1.1553 5.7707 43 1 -0.1935 1.1538 3.9911 44 1 0.6018 -1.9998 5.7389 45 1 1.2330 -3.2750 7.7475 46 1 2.9540 -2.3968 9.2738 47 1 3.4262 1.0257 6.7665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753630277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:59 Heat of formation + Delta-G solvation = -61.976618 kcal Electronic energy + Delta-G solvation = -26772.288517 eV Core-core repulsion = 22869.172116 eV Total energy + Delta-G solvation = -3903.116401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.12609 -40.87155 -38.91033 -36.87998 -35.53944 -34.37539 -32.46734 -31.08936 -30.27651 -29.78673 -27.79054 -26.61898 -25.47426 -24.34647 -22.80599 -22.64396 -21.75576 -20.30712 -19.47076 -17.99879 -17.18256 -16.83622 -16.45575 -16.30281 -16.08991 -15.79989 -15.47737 -14.77247 -14.48623 -14.41425 -14.25945 -14.14570 -13.67849 -13.56491 -13.07674 -12.99304 -12.77413 -12.64076 -12.52122 -12.37561 -12.29939 -12.21754 -12.06612 -12.03430 -11.38343 -11.13642 -11.06981 -10.93851 -10.73105 -10.59128 -10.43887 -10.05428 -9.82522 -9.67674 -9.24525 -9.06133 -8.90518 -8.89888 -6.94243 -5.79105 -3.07421 0.87759 0.94269 2.53728 3.00325 3.42215 3.42478 3.48428 3.50327 3.86832 4.13074 4.33137 4.50073 4.57511 4.62623 4.69149 4.74155 4.87388 5.02304 5.08793 5.17376 5.19226 5.29750 5.32068 5.35130 5.37812 5.54961 5.56039 5.69355 5.72799 5.77148 5.78481 5.83686 5.93143 5.96918 6.03939 6.08281 6.20186 6.21157 6.35967 6.45083 6.61130 6.62357 6.74754 6.84029 7.42963 7.69381 8.13756 8.40103 9.51515 10.08585 10.43346 11.43969 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030991 B = 0.002023 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.259427 B =13835.307207 C =13939.312209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.127 3.873 15 N -0.721 5.721 16 C 0.521 3.479 17 O -0.532 6.532 18 C -0.044 4.044 19 C -0.146 4.146 20 C -0.141 4.141 21 C -0.027 4.027 22 C -0.103 4.103 23 C -0.090 4.090 24 C -0.156 4.156 25 C 0.095 3.905 26 F -0.142 7.142 27 C -0.149 4.149 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.021 0.979 32 H 0.022 0.978 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.126 0.874 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.745 -0.944 27.860 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.373 5.373 16 C 0.306 3.694 17 O -0.408 6.408 18 C -0.047 4.047 19 C -0.204 4.204 20 C -0.198 4.198 21 C -0.028 4.028 22 C -0.121 4.121 23 C -0.108 4.108 24 C -0.175 4.175 25 C 0.076 3.924 26 F -0.121 7.121 27 C -0.167 4.167 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.144 0.856 45 H 0.150 0.850 46 H 0.151 0.849 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.171 -1.793 27.814 27.897 hybrid contribution 0.075 0.429 -0.923 1.021 sum -1.096 -1.364 26.891 26.948 Atomic orbital electron populations 1.21786 0.94659 1.01935 1.01458 1.21551 0.96705 1.00488 0.94189 0.90553 1.20574 0.96621 0.94206 0.85382 1.42342 1.66912 1.27691 1.00596 1.19283 1.28574 1.05391 0.83638 0.91104 1.24738 1.01047 0.97431 0.97881 1.69660 1.43605 1.16673 1.28380 0.86108 0.77590 0.77850 0.84605 1.20538 1.21875 1.21879 1.21430 1.00160 0.95256 0.82859 1.46041 1.57613 1.27866 1.05762 1.20231 0.79528 0.85487 0.84203 1.90734 1.39324 1.24173 1.86525 1.19751 0.98129 0.95790 0.91066 1.21982 1.00903 0.94035 1.03442 1.21929 0.91579 1.02965 1.03322 1.19107 0.95099 0.94710 0.93885 1.21004 1.00082 0.94060 0.96938 1.20967 0.96412 0.99606 0.93822 1.21138 0.98892 0.95573 1.01862 1.17629 0.90224 0.94398 0.90155 1.91496 1.62356 1.87979 1.70235 1.21097 0.99612 1.01708 0.94332 0.91140 0.92816 0.93953 0.96137 0.96007 0.78217 0.93579 0.91326 0.91366 0.76523 0.91169 0.90797 0.91432 0.91531 0.90970 0.91267 0.85590 0.84971 0.84914 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.94 37.15 0.33 -1.64 16 2 C -0.11 -1.63 2.46 -90.62 -0.22 -1.85 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.16 3.12 5.65 -4.04 -0.02 3.10 16 5 N -0.73 -18.05 5.33 -59.91 -0.32 -18.37 16 6 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 7 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 10 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 C 0.13 1.67 5.06 -4.04 -0.02 1.65 16 15 N -0.72 -7.78 5.11 -60.29 -0.31 -8.09 16 16 C 0.52 6.14 6.35 -10.99 -0.07 6.07 16 17 O -0.53 -8.41 15.54 5.56 0.09 -8.32 16 18 C -0.04 -0.38 0.72 -156.81 -0.11 -0.49 16 19 C -0.15 -1.02 7.11 37.16 0.26 -0.76 16 20 C -0.14 -0.91 8.07 37.16 0.30 -0.61 16 21 C -0.03 -0.27 4.23 -104.64 -0.44 -0.71 16 22 C -0.10 -0.98 8.38 -39.58 -0.33 -1.31 16 23 C -0.09 -0.76 10.04 -39.59 -0.40 -1.16 16 24 C -0.16 -1.38 10.03 -39.52 -0.40 -1.77 16 25 C 0.10 0.96 7.30 -39.42 -0.29 0.68 16 26 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 27 C -0.15 -1.45 8.97 -39.51 -0.35 -1.80 16 28 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.38 9.84 6.85 -40.82 -0.28 9.56 16 34 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.40 3.43 6.57 -40.82 -0.27 3.16 16 38 H 0.07 0.42 7.96 -51.93 -0.41 0.01 16 39 H 0.07 0.40 7.78 -51.93 -0.40 0.00 16 40 H 0.07 0.53 7.25 -51.93 -0.38 0.15 16 41 H 0.07 0.44 7.08 -51.93 -0.37 0.08 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.37 7.28 -51.93 -0.38 0.00 16 44 H 0.13 1.11 7.23 -52.49 -0.38 0.73 16 45 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 47 H 0.14 1.14 5.91 -52.49 -0.31 0.83 16 LS Contribution 383.51 15.07 5.78 5.78 Total: -1.00 -32.98 383.51 -8.31 -41.28 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.27 Total: 6.96 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.01 Total: -7.89 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.10 Total: -53.64 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.32 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.98 -8.31 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753630277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.695 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds