Wall clock time and date at job start Tue Mar 31 2020 13:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 N 1.46504 * 109.46795 * 174.99907 * 4 2 1 6 6 C 1.36940 * 120.00178 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99711 * 0.02562 * 6 5 4 8 8 C 1.38804 * 120.00219 * 179.97438 * 6 5 4 9 9 N 1.31623 * 120.00031 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00139 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46896 * 90.00471 * 10 8 6 12 12 H 1.48498 * 109.47159 * 210.00044 * 10 8 6 13 13 H 1.48500 * 109.46889 * 330.00551 * 10 8 6 14 14 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 15 15 C 1.34779 * 119.99965 * 85.00573 * 14 2 1 16 16 O 1.21276 * 120.00091 * 359.97438 * 15 14 2 17 17 C 1.50698 * 119.99670 * 179.97438 * 15 14 2 18 18 H 1.08999 * 109.47222 * 299.99529 * 17 15 14 19 19 C 1.53003 * 109.47183 * 60.00041 * 17 15 14 20 20 C 1.53001 * 109.46976 * 179.97438 * 17 15 14 21 21 C 1.53001 * 109.47463 * 175.00103 * 20 17 15 22 22 C 1.50700 * 109.47173 * 180.02562 * 21 20 17 23 23 C 1.38243 * 119.97261 * 269.72227 * 22 21 20 24 24 C 1.38199 * 120.02449 * 179.72491 * 23 22 21 25 25 C 1.38460 * 119.97439 * 0.57403 * 24 23 22 26 26 F 1.35092 * 120.02826 * 179.67814 * 25 24 23 27 27 C 1.38461 * 119.94424 * 359.70496 * 25 24 23 28 28 C 1.38191 * 119.97974 * 359.97438 * 27 25 24 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 33 33 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 34 34 H 0.97002 * 120.00414 * 359.97438 * 5 4 2 35 35 H 0.97000 * 120.00131 * 179.97438 * 9 8 6 36 36 H 0.97003 * 119.99991 * 264.99646 * 14 2 1 37 37 H 1.08999 * 109.47460 * 59.99634 * 19 17 15 38 38 H 1.09004 * 109.46709 * 179.97438 * 19 17 15 39 39 H 1.08994 * 109.46826 * 299.99192 * 19 17 15 40 40 H 1.09002 * 109.47303 * 295.00126 * 20 17 15 41 41 H 1.08997 * 109.47228 * 54.99580 * 20 17 15 42 42 H 1.09002 * 109.46880 * 300.00283 * 21 20 17 43 43 H 1.09003 * 109.47000 * 59.99848 * 21 20 17 44 44 H 1.08000 * 119.99046 * 359.97438 * 23 22 21 45 45 H 1.07999 * 120.01402 * 180.25286 * 24 23 22 46 46 H 1.08001 * 120.01046 * 179.97438 * 27 25 24 47 47 H 1.07999 * 119.99448 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1839 -1.4379 2.2073 7 1 3.6468 -1.8430 3.0522 8 6 5.5672 -1.5380 2.1515 9 7 6.2217 -1.0448 1.1216 10 14 6.5000 -2.3716 3.5388 11 1 6.6317 -3.8215 3.2456 12 1 7.8507 -1.7666 3.6606 13 1 5.7593 -2.1895 4.8129 14 7 2.0184 -0.6906 -1.1961 15 6 2.1472 -0.0183 -2.3571 16 8 1.8584 1.1584 -2.4117 17 6 2.6500 -0.7286 -3.5874 18 1 3.6493 -1.1204 -3.3977 19 6 1.7064 -1.8828 -3.9314 20 6 2.7009 0.2543 -4.7588 21 6 3.3276 -0.4324 -5.9740 22 6 3.3782 0.5360 -7.1275 23 6 2.3193 0.6114 -8.0130 24 6 2.3622 1.5031 -9.0680 25 6 3.4714 2.3127 -9.2448 26 9 3.5172 3.1801 -10.2794 27 6 4.5338 2.2321 -8.3606 28 6 4.4859 1.3445 -7.3025 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7517 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2952 34 1 3.9824 -0.4629 0.4317 35 1 7.1884 -1.1144 1.0828 36 1 2.2491 -1.6318 -1.1525 37 1 0.7071 -1.4910 -4.1210 38 1 2.0699 -2.3963 -4.8215 39 1 1.6698 -2.5832 -3.0970 40 1 1.6898 0.5780 -5.0057 41 1 3.3017 1.1202 -4.4807 42 1 4.3387 -0.7561 -5.7270 43 1 2.7267 -1.2982 -6.2520 44 1 1.4564 -0.0239 -7.8780 45 1 1.5330 1.5647 -9.7572 46 1 5.3997 2.8629 -8.4977 47 1 5.3143 1.2817 -6.6125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754269835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:53 Heat of formation + Delta-G solvation = -73.430435 kcal Electronic energy + Delta-G solvation = -26401.303731 eV Core-core repulsion = 22497.690656 eV Total energy + Delta-G solvation = -3903.613076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.10348 -39.90390 -39.31314 -36.47298 -35.35694 -33.65258 -32.38321 -31.38320 -31.04394 -29.85016 -28.04270 -25.70980 -25.28619 -23.30567 -23.11939 -22.44416 -21.20203 -20.35937 -19.59114 -17.90914 -17.29041 -16.82541 -16.64086 -16.06113 -15.79599 -15.53281 -15.26183 -14.75636 -14.51753 -14.22287 -13.87330 -13.76120 -13.62277 -13.50226 -13.43464 -13.13809 -12.83423 -12.55953 -12.35654 -12.23479 -12.08704 -11.87085 -11.66152 -11.61771 -11.46499 -11.24460 -10.93361 -10.87957 -10.85583 -10.68048 -10.45498 -10.07615 -9.77005 -9.39906 -9.36097 -8.94418 -8.74167 -8.64757 -6.98928 -5.81262 -3.10944 0.89425 0.98122 2.99913 3.30509 3.39778 3.45464 3.47207 3.56126 4.03131 4.44571 4.46568 4.54476 4.64053 4.80973 4.86135 4.97712 5.02663 5.04496 5.26057 5.29202 5.36906 5.47128 5.50797 5.51772 5.57360 5.64507 5.65400 5.76642 5.80378 5.83760 5.87052 5.93789 6.00219 6.02292 6.09732 6.14990 6.19051 6.31027 6.37009 6.39374 6.48701 6.65535 6.70260 6.98219 7.65108 7.92389 8.36824 8.60590 9.48636 10.04700 10.40273 11.41096 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.002327 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.431822 B =12027.789400 C =13138.218000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.132 3.868 3 H 0.085 0.915 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.242 4.242 7 H 0.071 0.929 8 C -0.012 4.012 9 N -0.931 5.931 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 N -0.710 5.710 15 C 0.519 3.481 16 O -0.551 6.551 17 C -0.113 4.113 18 H 0.102 0.898 19 C -0.144 4.144 20 C -0.092 4.092 21 C -0.084 4.084 22 C -0.084 4.084 23 C -0.089 4.089 24 C -0.153 4.153 25 C 0.087 3.913 26 F -0.144 7.144 27 C -0.151 4.151 28 C -0.087 4.087 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.024 0.976 34 H 0.386 0.614 35 H 0.255 0.745 36 H 0.403 0.597 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.398 0.273 -19.203 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.028 3.972 3 H 0.103 0.897 4 C 0.016 3.984 5 N -0.376 5.376 6 C -0.374 4.374 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.579 5.579 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.361 5.361 15 C 0.305 3.695 16 O -0.429 6.429 17 C -0.135 4.135 18 H 0.120 0.880 19 C -0.202 4.202 20 C -0.130 4.130 21 C -0.121 4.121 22 C -0.085 4.085 23 C -0.107 4.107 24 C -0.172 4.172 25 C 0.068 3.932 26 F -0.122 7.122 27 C -0.170 4.170 28 C -0.105 4.105 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.238 0.762 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.565 1.075 -19.097 21.385 hybrid contribution 0.938 -0.572 0.417 1.175 sum -8.626 0.503 -18.680 20.582 Atomic orbital electron populations 1.22091 0.95640 1.01743 1.02045 1.21218 0.93252 0.97997 0.84771 0.89663 1.20983 0.86842 0.96921 0.93662 1.42358 0.99749 1.70298 1.25239 1.19220 0.89442 1.29468 0.99227 0.91152 1.24751 0.96439 1.01562 0.98107 1.69667 1.07246 1.50757 1.30280 0.86186 0.79408 0.78959 0.81583 1.21716 1.21768 1.20771 1.46006 1.66430 1.14374 1.09278 1.20510 0.77259 0.87119 0.84611 1.90661 1.50768 1.16101 1.85330 1.21330 1.01634 0.97012 0.93489 0.88022 1.21820 0.99056 0.97027 1.02268 1.21351 1.02069 0.97712 0.91829 1.20742 1.02524 0.96542 0.92333 1.20016 0.94026 0.97804 0.96619 1.20934 0.98401 0.97853 0.93509 1.21129 0.97918 0.97659 1.00444 1.17734 0.96404 0.91828 0.87224 1.91487 1.96771 1.67670 1.56305 1.21166 0.98631 1.01357 0.95811 1.21011 0.98324 0.94457 0.96686 0.92511 0.92653 0.91776 0.94960 0.95844 0.78001 0.93489 0.76199 0.92294 0.91425 0.91975 0.91260 0.90746 0.90394 0.90426 0.85019 0.84916 0.84798 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.48 37.16 0.35 -1.78 16 2 C 0.13 2.21 2.73 -67.93 -0.19 2.03 16 3 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 4 C 0.14 2.77 5.82 -4.04 -0.02 2.75 16 5 N -0.73 -17.90 5.43 -59.91 -0.33 -18.23 16 6 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 9 N -0.93 -27.58 13.06 55.49 0.72 -26.85 16 10 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 N -0.71 -11.06 4.41 -53.81 -0.24 -11.30 16 15 C 0.52 8.14 7.12 -10.99 -0.08 8.06 16 16 O -0.55 -10.49 15.58 5.56 0.09 -10.40 16 17 C -0.11 -1.32 2.73 -91.77 -0.25 -1.57 16 18 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 19 C -0.14 -1.31 8.84 37.16 0.33 -0.98 16 20 C -0.09 -1.01 4.01 -26.73 -0.11 -1.12 16 21 C -0.08 -0.72 5.10 -27.88 -0.14 -0.86 16 22 C -0.08 -0.77 5.13 -104.62 -0.54 -1.31 16 23 C -0.09 -0.76 9.70 -39.59 -0.38 -1.14 16 24 C -0.15 -1.37 10.03 -39.51 -0.40 -1.76 16 25 C 0.09 0.89 7.30 -39.42 -0.29 0.60 16 26 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 27 C -0.15 -1.43 10.03 -39.52 -0.40 -1.83 16 28 C -0.09 -0.81 9.70 -39.60 -0.38 -1.19 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.39 10.08 7.33 -40.82 -0.30 9.78 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.40 5.93 8.02 -40.82 -0.33 5.60 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.49 6.56 -51.93 -0.34 0.15 16 39 H 0.06 0.56 7.56 -51.93 -0.39 0.16 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.97 7.95 -51.93 -0.41 0.56 16 42 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 43 H 0.08 0.55 6.51 -51.93 -0.34 0.21 16 44 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 46 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 392.95 15.07 5.92 5.92 Total: -1.00 -32.12 392.95 -9.10 -41.22 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -7.54 Total: 11.53 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -2.74 Total: -7.32 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.16 Total: -56.38 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.12 -9.10 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754269835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.215 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds