Wall clock time and date at job start Tue Mar 31 2020 13:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46731 * 2 1 4 4 C 1.53000 * 109.47217 * 120.00226 * 2 1 3 5 5 C 1.53008 * 109.47002 * 185.00087 * 4 2 1 6 6 C 1.53003 * 109.46874 * 179.97438 * 5 4 2 7 7 N 1.46491 * 109.46761 * 179.97438 * 6 5 4 8 8 C 1.36944 * 119.99794 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99993 * 359.97438 * 8 7 6 10 10 C 1.38814 * 119.99648 * 180.02562 * 8 7 6 11 11 N 1.31609 * 120.00303 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99682 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47096 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47216 * 119.99386 * 12 10 8 15 15 H 1.48497 * 109.46807 * 240.00064 * 12 10 8 16 16 N 1.46506 * 109.47226 * 240.00390 * 2 1 3 17 17 C 1.34773 * 120.00002 * 84.99510 * 16 2 1 18 18 O 1.21277 * 120.00129 * 0.02562 * 17 16 2 19 19 C 1.50706 * 119.99563 * 180.02562 * 17 16 2 20 20 H 1.08994 * 109.47120 * 15.00253 * 19 17 16 21 21 F 1.39894 * 109.46917 * 254.99826 * 19 17 16 22 22 C 1.53004 * 109.46503 * 135.00372 * 19 17 16 23 23 C 1.50706 * 109.46503 * 184.99692 * 22 19 17 24 24 C 1.38238 * 119.99727 * 90.00317 * 23 22 19 25 25 C 1.38234 * 119.99693 * 180.02562 * 24 23 22 26 26 C 1.38234 * 120.00240 * 359.97438 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.26327 * 26 25 24 28 28 C 1.38234 * 120.00207 * 270.01808 * 23 22 19 29 29 H 1.09002 * 109.47313 * 60.00157 * 1 2 3 30 30 H 1.09004 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46974 * 299.99700 * 1 2 3 32 32 H 1.09000 * 109.47086 * 304.99778 * 4 2 1 33 33 H 1.09000 * 109.46926 * 65.00070 * 4 2 1 34 34 H 1.09000 * 109.46948 * 299.99776 * 5 4 2 35 35 H 1.09002 * 109.46867 * 59.99912 * 5 4 2 36 36 H 1.08992 * 109.47086 * 300.00595 * 6 5 4 37 37 H 1.09000 * 109.46702 * 60.00198 * 6 5 4 38 38 H 0.97001 * 120.00476 * 0.02562 * 7 6 5 39 39 H 0.97006 * 120.00181 * 180.02562 * 11 10 8 40 40 H 0.97005 * 119.99391 * 264.99986 * 16 2 1 41 41 H 1.09000 * 109.47324 * 65.00281 * 22 19 17 42 42 H 1.08993 * 109.47443 * 304.99485 * 22 19 17 43 43 H 1.07997 * 119.99846 * 359.97438 * 24 23 22 44 44 H 1.07999 * 119.99751 * 179.97438 * 25 24 23 45 45 H 1.08002 * 119.99744 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 47 47 H 1.07999 * 120.00008 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0749 -1.3340 2.5632 7 7 5.5349 -1.2311 2.6245 8 6 6.2188 -1.8055 3.6627 9 1 5.6817 -2.3340 4.4364 10 6 7.6022 -1.7075 3.7210 11 7 8.2567 -1.0631 2.7784 12 14 8.5351 -2.4917 5.1368 13 1 7.5748 -3.1523 6.0569 14 1 9.4856 -3.5010 4.6047 15 1 9.2864 -1.4446 5.8747 16 7 2.0184 -0.6906 -1.1963 17 6 2.1470 -0.0182 -2.3572 18 8 1.8589 1.1586 -2.4115 19 6 2.6489 -0.7287 -3.5878 20 1 2.6014 -1.8062 -3.4300 21 9 3.9729 -0.3517 -3.8366 22 6 1.7768 -0.3499 -4.7866 23 6 2.2006 -1.1526 -5.9896 24 6 1.6140 -2.3782 -6.2442 25 6 2.0032 -3.1147 -7.3474 26 6 2.9784 -2.6256 -8.1961 27 6 3.5685 -1.4023 -7.9387 28 6 3.1762 -0.6636 -6.8381 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6055 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2055 34 1 3.9995 -1.0728 0.4259 35 1 3.8532 0.4370 1.3573 36 1 3.6402 -0.8743 3.4506 37 1 3.7865 -2.3843 2.5199 38 1 6.0173 -0.7562 1.9298 39 1 9.2235 -0.9950 2.8191 40 1 2.2491 -1.6318 -1.1527 41 1 1.8936 0.7128 -4.9994 42 1 0.7325 -0.5621 -4.5577 43 1 0.8524 -2.7605 -5.5809 44 1 1.5452 -4.0724 -7.5461 45 1 3.2827 -3.2013 -9.0578 46 1 4.3336 -1.0221 -8.5994 47 1 3.6349 0.2936 -6.6388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755526464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:54 Heat of formation + Delta-G solvation = -71.669413 kcal Electronic energy + Delta-G solvation = -26264.788722 eV Core-core repulsion = 22361.252010 eV Total energy + Delta-G solvation = -3903.536712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.02389 -40.02316 -39.45322 -36.89463 -34.88416 -34.04779 -32.67417 -31.33590 -31.18749 -29.67083 -29.21397 -25.78879 -25.11673 -23.03019 -22.88158 -21.69173 -21.00563 -20.78518 -20.70051 -18.11928 -17.04055 -17.02156 -16.94067 -16.40349 -15.72788 -15.33935 -15.17095 -14.87883 -14.64367 -14.53429 -14.26680 -13.77229 -13.71114 -13.50387 -13.34148 -13.08603 -12.98531 -12.86025 -12.71160 -12.33187 -12.25004 -12.14112 -11.56282 -11.39354 -11.32798 -11.27890 -11.21106 -10.86710 -10.82021 -10.47868 -10.42487 -9.99330 -9.94425 -9.68877 -9.26754 -9.21673 -9.03291 -8.86140 -6.90258 -5.74554 -3.03543 0.99191 1.10730 2.24095 2.77969 3.44162 3.46355 3.49210 3.51929 4.10272 4.26668 4.36599 4.48176 4.55335 4.61467 4.70904 4.73250 4.76887 4.84379 4.97403 5.09290 5.19536 5.21942 5.37113 5.43540 5.47462 5.50462 5.57202 5.58458 5.71287 5.73149 5.75639 5.90091 5.99985 6.06588 6.14594 6.17466 6.22101 6.29145 6.34182 6.34864 6.40305 6.69099 6.86019 6.89233 7.21251 7.71428 7.89535 8.44287 9.55074 10.14176 10.48298 11.48415 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.002354 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.711392 B =11892.785953 C =13421.496764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.138 3.862 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.127 4.127 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 N -0.711 5.711 17 C 0.494 3.506 18 O -0.522 6.522 19 C 0.089 3.911 20 H 0.099 0.901 21 F -0.183 7.183 22 C -0.096 4.096 23 C -0.090 4.090 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.102 4.102 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.017 0.983 37 H 0.016 0.984 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.404 0.596 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.901 -2.303 -20.484 27.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.165 4.165 6 C 0.026 3.974 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.218 1.218 15 H -0.219 1.219 16 N -0.363 5.363 17 C 0.277 3.723 18 O -0.397 6.397 19 C 0.050 3.950 20 H 0.117 0.883 21 F -0.164 7.164 22 C -0.134 4.134 23 C -0.090 4.090 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.139 4.139 27 C -0.137 4.137 28 C -0.120 4.120 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.035 0.965 37 H 0.034 0.966 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.238 0.762 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.047 -1.522 -20.343 27.909 hybrid contribution 1.054 -0.779 0.576 1.432 sum -17.993 -2.301 -19.767 26.828 Atomic orbital electron populations 1.22170 0.95173 1.02103 1.02565 1.21140 0.93755 0.97945 0.83726 0.89133 1.21859 0.96989 1.00780 0.96484 1.21750 0.93541 1.01569 0.99622 1.20637 0.86245 0.96405 0.94142 1.42395 1.00184 1.66255 1.29062 1.19283 0.89449 1.27091 1.01261 0.91162 1.24766 0.96481 1.01245 0.98673 1.69674 1.07146 1.46991 1.34343 0.86114 0.79900 0.78507 0.81660 1.20569 1.21848 1.21851 1.46184 1.66225 1.14347 1.09507 1.20879 0.78666 0.87783 0.84934 1.90729 1.48793 1.15425 1.84800 1.21541 0.79429 1.00367 0.93696 0.88270 1.92926 1.35327 1.93194 1.94966 1.21030 0.99616 1.01881 0.90844 1.19693 0.97522 0.95352 0.96392 1.21066 1.00112 0.94234 0.97855 1.21137 0.97832 0.99833 0.95089 1.21197 0.96853 0.96210 0.99602 1.21190 0.99848 0.95034 0.97616 1.21147 0.96345 1.00235 0.94300 0.92316 0.92405 0.91330 0.90095 0.91315 0.92042 0.91896 0.96498 0.96591 0.78305 0.93544 0.76151 0.88374 0.88811 0.85950 0.85984 0.86094 0.85903 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 2 C 0.14 1.51 2.57 -67.93 -0.17 1.33 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 4 C -0.12 -1.39 4.75 -26.73 -0.13 -1.52 16 5 C -0.13 -2.00 5.22 -26.73 -0.14 -2.14 16 6 C 0.15 3.08 6.26 -4.04 -0.03 3.05 16 7 N -0.73 -19.17 5.60 -59.91 -0.34 -19.51 16 8 C -0.24 -6.87 9.99 -15.05 -0.15 -7.02 16 9 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 10 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.90 13.06 55.49 0.72 -28.18 16 12 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 N -0.71 -7.33 4.53 -53.80 -0.24 -7.58 16 17 C 0.49 5.92 7.13 -10.98 -0.08 5.84 16 18 O -0.52 -8.06 16.27 5.56 0.09 -7.97 16 19 C 0.09 0.89 3.76 -27.88 -0.10 0.79 16 20 H 0.10 0.73 7.99 -51.93 -0.42 0.32 16 21 F -0.18 -2.43 16.75 2.25 0.04 -2.39 16 22 C -0.10 -0.83 4.82 -27.88 -0.13 -0.97 16 23 C -0.09 -0.79 5.00 -104.62 -0.52 -1.31 16 24 C -0.11 -0.89 9.70 -39.58 -0.38 -1.27 16 25 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 26 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 27 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 28 C -0.10 -0.94 9.55 -39.58 -0.38 -1.32 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.99 7.75 -51.93 -0.40 0.59 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.38 10.59 7.67 -40.82 -0.31 10.27 16 39 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.40 3.32 8.50 -40.82 -0.35 2.97 16 41 H 0.10 0.95 7.99 -51.93 -0.42 0.54 16 42 H 0.09 0.66 8.08 -51.93 -0.42 0.24 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 47 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 398.10 15.07 6.00 6.00 Total: -1.00 -34.83 398.10 -9.66 -44.49 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.75 Total: 7.63 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -3.16 Total: -10.20 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.15 Total: -55.27 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.83 -9.66 -44.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755526464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.182 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds