Wall clock time and date at job start Tue Mar 31 2020 13:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46731 * 2 1 4 4 C 1.53000 * 109.47217 * 120.00226 * 2 1 3 5 5 C 1.53008 * 109.47002 * 185.00087 * 4 2 1 6 6 C 1.53003 * 109.46874 * 179.97438 * 5 4 2 7 7 N 1.46491 * 109.46761 * 179.97438 * 6 5 4 8 8 C 1.36944 * 119.99794 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99993 * 359.97438 * 8 7 6 10 10 C 1.38814 * 119.99648 * 180.02562 * 8 7 6 11 11 N 1.31609 * 120.00303 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99682 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47096 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47216 * 119.99386 * 12 10 8 15 15 H 1.48497 * 109.46807 * 240.00064 * 12 10 8 16 16 N 1.46506 * 109.47226 * 240.00390 * 2 1 3 17 17 C 1.34773 * 120.00002 * 84.99510 * 16 2 1 18 18 O 1.21277 * 120.00129 * 0.02562 * 17 16 2 19 19 C 1.50706 * 119.99563 * 180.02562 * 17 16 2 20 20 H 1.08994 * 109.47120 * 15.00253 * 19 17 16 21 21 F 1.39894 * 109.46917 * 254.99826 * 19 17 16 22 22 C 1.53004 * 109.46503 * 135.00372 * 19 17 16 23 23 C 1.50706 * 109.46503 * 184.99692 * 22 19 17 24 24 C 1.38238 * 119.99727 * 90.00317 * 23 22 19 25 25 C 1.38234 * 119.99693 * 180.02562 * 24 23 22 26 26 C 1.38234 * 120.00240 * 359.97438 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.26327 * 26 25 24 28 28 C 1.38234 * 120.00207 * 270.01808 * 23 22 19 29 29 H 1.09002 * 109.47313 * 60.00157 * 1 2 3 30 30 H 1.09004 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46974 * 299.99700 * 1 2 3 32 32 H 1.09000 * 109.47086 * 304.99778 * 4 2 1 33 33 H 1.09000 * 109.46926 * 65.00070 * 4 2 1 34 34 H 1.09000 * 109.46948 * 299.99776 * 5 4 2 35 35 H 1.09002 * 109.46867 * 59.99912 * 5 4 2 36 36 H 1.08992 * 109.47086 * 300.00595 * 6 5 4 37 37 H 1.09000 * 109.46702 * 60.00198 * 6 5 4 38 38 H 0.97001 * 120.00476 * 0.02562 * 7 6 5 39 39 H 0.97006 * 120.00181 * 180.02562 * 11 10 8 40 40 H 0.97005 * 119.99391 * 264.99986 * 16 2 1 41 41 H 1.09000 * 109.47324 * 65.00281 * 22 19 17 42 42 H 1.08993 * 109.47443 * 304.99485 * 22 19 17 43 43 H 1.07997 * 119.99846 * 359.97438 * 24 23 22 44 44 H 1.07999 * 119.99751 * 179.97438 * 25 24 23 45 45 H 1.08002 * 119.99744 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 47 47 H 1.07999 * 120.00008 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0749 -1.3340 2.5632 7 7 5.5349 -1.2311 2.6245 8 6 6.2188 -1.8055 3.6627 9 1 5.6817 -2.3340 4.4364 10 6 7.6022 -1.7075 3.7210 11 7 8.2567 -1.0631 2.7784 12 14 8.5351 -2.4917 5.1368 13 1 7.5748 -3.1523 6.0569 14 1 9.4856 -3.5010 4.6047 15 1 9.2864 -1.4446 5.8747 16 7 2.0184 -0.6906 -1.1963 17 6 2.1470 -0.0182 -2.3572 18 8 1.8589 1.1586 -2.4115 19 6 2.6489 -0.7287 -3.5878 20 1 2.6014 -1.8062 -3.4300 21 9 3.9729 -0.3517 -3.8366 22 6 1.7768 -0.3499 -4.7866 23 6 2.2006 -1.1526 -5.9896 24 6 1.6140 -2.3782 -6.2442 25 6 2.0032 -3.1147 -7.3474 26 6 2.9784 -2.6256 -8.1961 27 6 3.5685 -1.4023 -7.9387 28 6 3.1762 -0.6636 -6.8381 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6055 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2055 34 1 3.9995 -1.0728 0.4259 35 1 3.8532 0.4370 1.3573 36 1 3.6402 -0.8743 3.4506 37 1 3.7865 -2.3843 2.5199 38 1 6.0173 -0.7562 1.9298 39 1 9.2235 -0.9950 2.8191 40 1 2.2491 -1.6318 -1.1527 41 1 1.8936 0.7128 -4.9994 42 1 0.7325 -0.5621 -4.5577 43 1 0.8524 -2.7605 -5.5809 44 1 1.5452 -4.0724 -7.5461 45 1 3.2827 -3.2013 -9.0578 46 1 4.3336 -1.0221 -8.5994 47 1 3.6349 0.2936 -6.6388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755526464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:53 Heat of formation + Delta-G solvation = -92.660537 kcal Electronic energy + Delta-G solvation = -26265.698965 eV Core-core repulsion = 22361.252010 eV Total energy + Delta-G solvation = -3904.446956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.96692 -40.95816 -40.06782 -38.03803 -36.55677 -34.75825 -34.21827 -32.70106 -31.76607 -31.03773 -30.04333 -27.25334 -25.98351 -24.74250 -23.46383 -22.62841 -22.23527 -21.74955 -21.60451 -19.15951 -18.96608 -17.85607 -17.65623 -17.28044 -16.68837 -16.54513 -16.05841 -15.89874 -15.78775 -15.66512 -15.44877 -15.23695 -15.08761 -14.46423 -14.27777 -14.08006 -13.84539 -13.74431 -13.61081 -13.45479 -13.20474 -13.03509 -12.98136 -12.81222 -12.40684 -12.32047 -12.23467 -12.06485 -11.98149 -11.87477 -11.85134 -11.72663 -11.51304 -10.95669 -10.90573 -10.20197 -9.81015 -9.65071 -9.01979 -7.96769 -5.26495 0.38621 0.51243 1.29300 1.46237 1.47749 1.57911 1.93183 2.54891 2.85120 3.32290 3.37047 3.55352 3.61223 3.66200 3.82937 3.93973 3.98829 4.09090 4.12282 4.17908 4.27621 4.31965 4.39144 4.54708 4.57346 4.63213 4.66815 4.79639 4.82531 4.83836 4.85370 4.90993 4.99138 5.10761 5.12499 5.18176 5.31599 5.33490 5.42014 5.49629 5.50686 5.57205 5.64085 5.68101 6.12245 6.25702 6.35803 7.01981 7.30904 8.08347 8.29836 9.27283 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.002354 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.711392 B =11892.785953 C =13421.496764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 H 0.063 0.937 4 C -0.109 4.109 5 C -0.115 4.115 6 C 0.150 3.850 7 N -0.752 5.752 8 C -0.245 4.245 9 H 0.079 0.921 10 C -0.081 4.081 11 N -0.972 5.972 12 Si 0.977 3.023 13 H -0.263 1.263 14 H -0.292 1.292 15 H -0.294 1.294 16 N -0.701 5.701 17 C 0.492 3.508 18 O -0.564 6.564 19 C 0.087 3.913 20 H 0.132 0.868 21 F -0.205 7.205 22 C -0.088 4.088 23 C -0.101 4.101 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.127 4.127 27 C -0.132 4.132 28 C -0.125 4.125 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.021 0.979 37 H 0.028 0.972 38 H 0.371 0.629 39 H 0.251 0.749 40 H 0.416 0.584 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.141 0.859 46 H 0.134 0.866 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.787 -4.643 -20.061 29.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.035 3.965 3 H 0.081 0.919 4 C -0.147 4.147 5 C -0.153 4.153 6 C 0.024 3.976 7 N -0.395 5.395 8 C -0.377 4.377 9 H 0.097 0.903 10 C -0.273 4.273 11 N -0.623 5.623 12 Si 0.805 3.195 13 H -0.187 1.187 14 H -0.219 1.219 15 H -0.221 1.221 16 N -0.353 5.353 17 C 0.276 3.724 18 O -0.442 6.442 19 C 0.048 3.952 20 H 0.150 0.850 21 F -0.186 7.186 22 C -0.126 4.126 23 C -0.101 4.101 24 C -0.135 4.135 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.149 4.149 28 C -0.143 4.143 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.046 0.954 38 H 0.202 0.798 39 H 0.060 0.940 40 H 0.254 0.746 41 H 0.098 0.902 42 H 0.131 0.869 43 H 0.164 0.836 44 H 0.163 0.837 45 H 0.159 0.841 46 H 0.151 0.849 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.982 -3.903 -19.899 29.179 hybrid contribution 1.586 -0.054 0.431 1.645 sum -19.396 -3.957 -19.468 27.764 Atomic orbital electron populations 1.22090 0.93106 1.03399 1.02554 1.21074 0.95260 0.96484 0.83632 0.91911 1.21766 0.93289 1.02497 0.97154 1.21619 0.96743 0.99610 0.97347 1.20864 0.83086 0.97501 0.96171 1.42690 1.02643 1.65929 1.28190 1.19723 0.89999 1.26273 1.01721 0.90342 1.25659 0.97613 1.02500 1.01517 1.69840 1.07055 1.48936 1.36515 0.85024 0.78455 0.77339 0.78648 1.18711 1.21900 1.22106 1.46158 1.65359 1.14905 1.08913 1.21237 0.78035 0.87339 0.85766 1.90710 1.50719 1.17257 1.85503 1.21793 0.78296 1.01828 0.93250 0.85017 1.92879 1.37109 1.93538 1.95061 1.20960 1.00390 1.00833 0.90426 1.19761 0.97875 0.96102 0.96381 1.21356 1.00266 0.93594 0.98333 1.21496 0.97526 1.00672 0.94685 1.21517 0.96710 0.95980 1.00310 1.21411 1.00388 0.95547 0.97602 1.21268 0.97242 1.00448 0.95372 0.93443 0.90377 0.90298 0.88919 0.88899 0.92547 0.93820 0.96148 0.95426 0.79805 0.94014 0.74645 0.90240 0.86858 0.83640 0.83675 0.84147 0.84856 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.48 71.98 0.68 -1.72 16 2 C 0.14 2.84 2.57 44.99 0.12 2.96 16 3 H 0.06 1.66 7.58 -2.38 -0.02 1.64 16 4 C -0.11 -2.21 4.75 30.60 0.15 -2.06 16 5 C -0.12 -3.53 5.22 30.60 0.16 -3.37 16 6 C 0.15 5.83 6.26 86.38 0.54 6.37 16 7 N -0.75 -39.31 5.60 -343.47 -1.92 -41.24 16 8 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 9 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 10 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 11 N -0.97 -61.23 13.06 21.65 0.28 -60.95 16 12 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 13 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 14 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 15 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 16 N -0.70 -13.49 4.53 -442.52 -2.00 -15.49 16 17 C 0.49 11.65 7.13 87.66 0.63 12.27 16 18 O -0.56 -17.88 16.27 -3.02 -0.05 -17.93 16 19 C 0.09 1.70 3.76 29.85 0.11 1.82 16 20 H 0.13 1.66 7.99 -2.39 -0.02 1.65 16 21 F -0.20 -5.57 16.75 44.97 0.75 -4.82 16 22 C -0.09 -1.51 4.82 29.85 0.14 -1.37 16 23 C -0.10 -1.73 5.00 -19.86 -0.10 -1.83 16 24 C -0.12 -1.58 9.70 22.27 0.22 -1.37 16 25 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 26 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 27 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 28 C -0.13 -2.38 9.55 22.27 0.21 -2.17 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 30 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 1.78 7.75 -2.39 -0.02 1.76 16 35 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.37 20.91 7.67 -92.71 -0.71 20.20 16 39 H 0.25 15.24 8.31 -92.70 -0.77 14.47 16 40 H 0.42 5.84 8.50 -92.70 -0.79 5.05 16 41 H 0.08 1.65 7.99 -2.39 -0.02 1.63 16 42 H 0.11 1.44 8.08 -2.39 -0.02 1.42 16 43 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 44 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 45 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 46 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 47 H 0.12 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -76.48 398.10 3.38 -73.10 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.54 Total: 31.33 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 4.83 Total: -12.71 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -3.65 Total: -117.68 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.05 Total: -17.93 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.75 Total: -4.82 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -76.48 3.38 -73.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755526464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.557 kcal (2) G-P(sol) polarization free energy of solvation -76.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds