Wall clock time and date at job start Tue Mar 31 2020 13:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47113 * 2 1 4 4 H 1.08999 * 109.47426 * 59.87743 * 3 2 1 5 5 F 1.39905 * 109.47104 * 299.87496 * 3 2 1 6 6 C 1.50698 * 109.47015 * 179.87656 * 3 2 1 7 7 O 1.21286 * 120.00175 * 247.76018 * 6 3 2 8 8 N 1.34779 * 120.00265 * 67.75738 * 6 3 2 9 9 C 1.46501 * 119.99948 * 5.00652 * 8 6 3 10 10 C 1.53006 * 109.46886 * 96.99401 * 9 8 6 11 11 C 1.53005 * 109.46783 * 180.02562 * 10 9 8 12 12 N 1.46500 * 109.46958 * 180.02562 * 11 10 9 13 13 C 1.36933 * 119.99998 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99996 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00005 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00050 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00018 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47312 * 89.99844 * 17 15 13 19 19 H 1.48504 * 109.47246 * 210.00237 * 17 15 13 20 20 H 1.48502 * 109.47151 * 329.99431 * 17 15 13 21 21 C 1.46501 * 120.00191 * 185.00544 * 8 6 3 22 22 C 1.50707 * 109.47119 * 276.32833 * 21 8 6 23 23 C 1.38236 * 119.99826 * 267.11217 * 22 21 8 24 24 C 1.38230 * 119.99829 * 179.76810 * 23 22 21 25 25 C 1.38239 * 119.99917 * 0.50397 * 24 23 22 26 26 C 1.38231 * 120.00333 * 359.74725 * 25 24 23 27 27 C 1.38230 * 120.00030 * 87.38301 * 22 21 8 28 28 H 1.08999 * 109.47511 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47290 * 300.00664 * 1 2 3 30 30 H 1.09004 * 109.47343 * 60.00127 * 1 2 3 31 31 H 1.09000 * 109.47291 * 239.99881 * 2 1 3 32 32 H 1.09001 * 109.46881 * 119.99644 * 2 1 3 33 33 H 1.08994 * 109.47468 * 216.99632 * 9 8 6 34 34 H 1.09001 * 109.46815 * 337.00030 * 9 8 6 35 35 H 1.09001 * 109.47152 * 300.00022 * 10 9 8 36 36 H 1.08993 * 109.47077 * 60.00456 * 10 9 8 37 37 H 1.08994 * 109.47495 * 300.00184 * 11 10 9 38 38 H 1.09001 * 109.46891 * 60.00645 * 11 10 9 39 39 H 0.97004 * 120.00160 * 0.02562 * 12 11 10 40 40 H 0.97005 * 119.99824 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.46976 * 36.32269 * 21 8 6 42 42 H 1.08995 * 109.47331 * 156.33040 * 21 8 6 43 43 H 1.07997 * 120.00392 * 359.97438 * 23 22 21 44 44 H 1.08001 * 120.00022 * 180.23048 * 24 23 22 45 45 H 1.07998 * 119.99995 * 179.72736 * 25 24 23 46 46 H 1.08001 * 120.00456 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.00145 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6749 1.9570 0.8889 5 9 1.5759 2.1011 -1.1438 6 6 3.5469 1.4424 0.0031 7 8 4.1514 1.8407 0.9762 8 7 4.2231 0.9998 -1.0756 9 6 3.4973 0.6221 -2.2908 10 6 3.5058 1.7937 -3.2749 11 6 2.7472 1.3994 -4.5438 12 7 2.7559 2.5210 -5.4863 13 6 2.1335 2.4002 -6.6999 14 1 1.6365 1.4780 -6.9625 15 6 2.1422 3.4627 -7.5932 16 7 2.7483 4.5864 -7.2734 17 14 1.2936 3.2977 -9.2491 18 1 -0.1201 3.7355 -9.1268 19 1 1.9900 4.1467 -10.2490 20 1 1.3365 1.8798 -9.6883 21 6 5.6838 0.8965 -1.0329 22 6 6.2918 2.2392 -1.3471 23 6 6.6401 2.5529 -2.6475 24 6 7.1934 3.7862 -2.9365 25 6 7.4080 4.7020 -1.9234 26 6 7.0645 4.3863 -0.6222 27 6 6.5064 3.1548 -0.3340 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9802 -0.2408 -2.7491 34 1 2.4681 0.3696 -2.0356 35 1 3.0228 2.6567 -2.8166 36 1 4.5349 2.0463 -3.5301 37 1 3.2298 0.5363 -5.0022 38 1 1.7181 1.1472 -4.2882 39 1 3.2026 3.3491 -5.2506 40 1 2.7540 5.3290 -7.8975 41 1 5.9967 0.5799 -0.0379 42 1 6.0180 0.1652 -1.7688 43 1 6.4770 1.8356 -3.4383 44 1 7.4621 4.0327 -3.9531 45 1 7.8443 5.6639 -2.1485 46 1 7.2325 5.1016 0.1694 47 1 6.2387 2.9079 0.6827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755537708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:49 Heat of formation + Delta-G solvation = -49.227917 kcal Electronic energy + Delta-G solvation = -28269.267235 eV Core-core repulsion = 24366.703659 eV Total energy + Delta-G solvation = -3902.563576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.98225 -40.25372 -38.74338 -36.49122 -34.76559 -34.37608 -32.40853 -31.46014 -30.75170 -29.48654 -28.22608 -26.03255 -25.12166 -22.99613 -22.50145 -22.12369 -21.48985 -20.87626 -19.61516 -17.64820 -17.06644 -17.01946 -16.60989 -15.95120 -15.59561 -15.36413 -14.96035 -14.69314 -14.51305 -14.30267 -14.26528 -13.90381 -13.30826 -13.24167 -13.16223 -13.06621 -12.83781 -12.50469 -12.39578 -12.29755 -12.21749 -12.12524 -11.90610 -11.34431 -11.14267 -10.98713 -10.86090 -10.83640 -10.76842 -10.63058 -10.27088 -10.05799 -9.85153 -9.68774 -8.85395 -8.83413 -8.72683 -8.59623 -6.87613 -5.72372 -3.00907 1.37048 1.56409 2.30020 2.85493 3.45578 3.50288 3.52147 3.91794 4.02139 4.25097 4.57921 4.62207 4.64070 4.81180 4.82211 4.98718 5.08032 5.14792 5.19842 5.25207 5.28129 5.32957 5.39129 5.47620 5.53541 5.59911 5.65829 5.67640 5.77280 5.79815 5.96930 5.99583 6.05035 6.09914 6.19746 6.32289 6.40269 6.43398 6.59688 6.66293 6.69735 6.90395 6.92544 7.13178 7.19921 7.72728 7.88473 8.46297 9.57296 10.16605 10.51016 11.50525 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009472 B = 0.004426 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.378697 B = 6325.288191 C = 8590.023846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.155 4.155 3 C 0.078 3.922 4 H 0.113 0.887 5 F -0.184 7.184 6 C 0.499 3.501 7 O -0.531 6.531 8 N -0.592 5.592 9 C 0.097 3.903 10 C -0.146 4.146 11 C 0.158 3.842 12 N -0.731 5.731 13 C -0.238 4.238 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.933 5.933 17 Si 0.906 3.094 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C 0.157 3.843 22 C -0.112 4.112 23 C -0.097 4.097 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.129 4.129 27 C -0.096 4.096 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.015 0.985 38 H 0.018 0.982 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.841 -9.310 17.562 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.193 4.193 3 C 0.039 3.961 4 H 0.131 0.869 5 F -0.165 7.165 6 C 0.285 3.715 7 O -0.407 6.407 8 N -0.323 5.323 9 C -0.025 4.025 10 C -0.185 4.185 11 C 0.030 3.970 12 N -0.375 5.375 13 C -0.369 4.369 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.582 5.582 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C 0.035 3.965 22 C -0.113 4.113 23 C -0.116 4.116 24 C -0.137 4.137 25 C -0.133 4.133 26 C -0.147 4.147 27 C -0.115 4.115 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.033 0.967 38 H 0.036 0.964 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.061 -9.186 17.907 20.752 hybrid contribution -0.405 0.497 -1.134 1.303 sum 4.657 -8.689 16.773 19.456 Atomic orbital electron populations 1.21751 0.93707 1.02635 1.03029 1.22317 0.98327 0.93998 1.04634 1.21952 0.90628 0.95403 0.88163 0.86875 1.92946 1.89490 1.82343 1.51709 1.20985 0.90061 0.77412 0.83015 1.90683 1.69833 1.45797 1.34408 1.48047 1.06580 1.64151 1.13557 1.22090 0.97763 0.98258 0.84401 1.22257 1.02168 0.98072 0.95956 1.20517 0.96356 0.91666 0.88450 1.42327 1.66236 1.13312 1.15650 1.19223 1.26836 0.98506 0.92350 0.91246 1.24733 1.01346 0.96181 0.98763 1.69669 1.48228 1.03915 1.36358 0.86205 0.79030 0.77088 0.83964 1.21752 1.21819 1.20796 1.20403 0.78821 0.94148 1.03117 1.20099 1.00416 0.96977 0.93781 1.21090 0.97658 0.97202 0.95635 1.21181 0.99296 0.93840 0.99387 1.21180 0.99815 0.99252 0.93092 1.21130 1.00049 0.96914 0.96646 1.21200 0.97333 0.93377 0.99553 0.91750 0.92309 0.91339 0.89370 0.89701 0.90360 0.88794 0.91076 0.91194 0.96676 0.96376 0.78282 0.93576 0.89520 0.89235 0.85860 0.85826 0.86327 0.86456 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.79 37.16 0.36 -0.86 16 2 C -0.16 -1.32 5.37 -26.73 -0.14 -1.46 16 3 C 0.08 0.88 3.42 -27.89 -0.10 0.78 16 4 H 0.11 1.15 8.12 -51.93 -0.42 0.72 16 5 F -0.18 -2.61 13.07 2.25 0.03 -2.58 16 6 C 0.50 6.55 6.81 -10.99 -0.07 6.48 16 7 O -0.53 -8.12 14.98 5.55 0.08 -8.03 16 8 N -0.59 -7.19 2.48 -175.05 -0.43 -7.62 16 9 C 0.10 1.19 4.55 -4.04 -0.02 1.17 16 10 C -0.15 -2.39 5.36 -26.73 -0.14 -2.53 16 11 C 0.16 3.16 6.26 -4.04 -0.03 3.13 16 12 N -0.73 -18.86 5.60 -59.91 -0.34 -19.20 16 13 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 16 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 17 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.16 1.77 5.52 -5.19 -0.03 1.74 16 22 C -0.11 -1.48 5.39 -104.62 -0.56 -2.04 16 23 C -0.10 -1.33 7.86 -39.59 -0.31 -1.64 16 24 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 25 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 26 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 27 C -0.10 -1.32 9.16 -39.58 -0.36 -1.68 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.64 7.81 -51.93 -0.41 0.23 16 31 H 0.09 0.74 5.54 -51.93 -0.29 0.45 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.81 7.97 -51.93 -0.41 0.39 16 34 H 0.09 1.08 3.59 -51.93 -0.19 0.89 16 35 H 0.07 1.33 6.84 -51.93 -0.36 0.97 16 36 H 0.07 1.17 5.09 -51.93 -0.26 0.91 16 37 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 40 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.09 0.94 7.66 -51.93 -0.40 0.54 16 42 H 0.09 0.82 7.83 -51.93 -0.41 0.42 16 43 H 0.12 1.60 7.23 -52.49 -0.38 1.22 16 44 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 46 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 47 H 0.13 1.77 6.77 -52.49 -0.36 1.41 16 LS Contribution 378.32 15.07 5.70 5.70 Total: -1.00 -33.28 378.32 -9.21 -42.49 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.11 Total: 9.95 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -2.84 Total: -10.35 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.04 Total: -54.74 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.08 Total: -8.03 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.03 Total: -2.58 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.28 -9.21 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755537708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.741 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds