Wall clock time and date at job start Tue Mar 31 2020 13:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47113 * 2 1 4 4 H 1.08999 * 109.47426 * 59.87743 * 3 2 1 5 5 F 1.39905 * 109.47104 * 299.87496 * 3 2 1 6 6 C 1.50698 * 109.47015 * 179.87656 * 3 2 1 7 7 O 1.21286 * 120.00175 * 247.76018 * 6 3 2 8 8 N 1.34779 * 120.00265 * 67.75738 * 6 3 2 9 9 C 1.46501 * 119.99948 * 5.00652 * 8 6 3 10 10 C 1.53006 * 109.46886 * 96.99401 * 9 8 6 11 11 C 1.53005 * 109.46783 * 180.02562 * 10 9 8 12 12 N 1.46500 * 109.46958 * 180.02562 * 11 10 9 13 13 C 1.36933 * 119.99998 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99996 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00005 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00050 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00018 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47312 * 89.99844 * 17 15 13 19 19 H 1.48504 * 109.47246 * 210.00237 * 17 15 13 20 20 H 1.48502 * 109.47151 * 329.99431 * 17 15 13 21 21 C 1.46501 * 120.00191 * 185.00544 * 8 6 3 22 22 C 1.50707 * 109.47119 * 276.32833 * 21 8 6 23 23 C 1.38236 * 119.99826 * 267.11217 * 22 21 8 24 24 C 1.38230 * 119.99829 * 179.76810 * 23 22 21 25 25 C 1.38239 * 119.99917 * 0.50397 * 24 23 22 26 26 C 1.38231 * 120.00333 * 359.74725 * 25 24 23 27 27 C 1.38230 * 120.00030 * 87.38301 * 22 21 8 28 28 H 1.08999 * 109.47511 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47290 * 300.00664 * 1 2 3 30 30 H 1.09004 * 109.47343 * 60.00127 * 1 2 3 31 31 H 1.09000 * 109.47291 * 239.99881 * 2 1 3 32 32 H 1.09001 * 109.46881 * 119.99644 * 2 1 3 33 33 H 1.08994 * 109.47468 * 216.99632 * 9 8 6 34 34 H 1.09001 * 109.46815 * 337.00030 * 9 8 6 35 35 H 1.09001 * 109.47152 * 300.00022 * 10 9 8 36 36 H 1.08993 * 109.47077 * 60.00456 * 10 9 8 37 37 H 1.08994 * 109.47495 * 300.00184 * 11 10 9 38 38 H 1.09001 * 109.46891 * 60.00645 * 11 10 9 39 39 H 0.97004 * 120.00160 * 0.02562 * 12 11 10 40 40 H 0.97005 * 119.99824 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.46976 * 36.32269 * 21 8 6 42 42 H 1.08995 * 109.47331 * 156.33040 * 21 8 6 43 43 H 1.07997 * 120.00392 * 359.97438 * 23 22 21 44 44 H 1.08001 * 120.00022 * 180.23048 * 24 23 22 45 45 H 1.07998 * 119.99995 * 179.72736 * 25 24 23 46 46 H 1.08001 * 120.00456 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.00145 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6749 1.9570 0.8889 5 9 1.5759 2.1011 -1.1438 6 6 3.5469 1.4424 0.0031 7 8 4.1514 1.8407 0.9762 8 7 4.2231 0.9998 -1.0756 9 6 3.4973 0.6221 -2.2908 10 6 3.5058 1.7937 -3.2749 11 6 2.7472 1.3994 -4.5438 12 7 2.7559 2.5210 -5.4863 13 6 2.1335 2.4002 -6.6999 14 1 1.6365 1.4780 -6.9625 15 6 2.1422 3.4627 -7.5932 16 7 2.7483 4.5864 -7.2734 17 14 1.2936 3.2977 -9.2491 18 1 -0.1201 3.7355 -9.1268 19 1 1.9900 4.1467 -10.2490 20 1 1.3365 1.8798 -9.6883 21 6 5.6838 0.8965 -1.0329 22 6 6.2918 2.2392 -1.3471 23 6 6.6401 2.5529 -2.6475 24 6 7.1934 3.7862 -2.9365 25 6 7.4080 4.7020 -1.9234 26 6 7.0645 4.3863 -0.6222 27 6 6.5064 3.1548 -0.3340 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9802 -0.2408 -2.7491 34 1 2.4681 0.3696 -2.0356 35 1 3.0228 2.6567 -2.8166 36 1 4.5349 2.0463 -3.5301 37 1 3.2298 0.5363 -5.0022 38 1 1.7181 1.1472 -4.2882 39 1 3.2026 3.3491 -5.2506 40 1 2.7540 5.3290 -7.8975 41 1 5.9967 0.5799 -0.0379 42 1 6.0180 0.1652 -1.7688 43 1 6.4770 1.8356 -3.4383 44 1 7.4621 4.0327 -3.9531 45 1 7.8443 5.6639 -2.1485 46 1 7.2325 5.1016 0.1694 47 1 6.2387 2.9079 0.6827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755537708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:49 Heat of formation + Delta-G solvation = -67.750250 kcal Electronic energy + Delta-G solvation = -28270.070423 eV Core-core repulsion = 24366.703659 eV Total energy + Delta-G solvation = -3903.366764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.99562 -41.27214 -39.77193 -37.74237 -36.43003 -35.12214 -34.02882 -32.72345 -31.82169 -31.12660 -29.08384 -27.33685 -26.39378 -24.64378 -23.54120 -23.10745 -22.46654 -22.31891 -20.59807 -19.12048 -18.61625 -18.06293 -17.66302 -16.90744 -16.64114 -16.53342 -16.34832 -15.97541 -15.74869 -15.51283 -15.44767 -15.12083 -14.87123 -14.72249 -14.28659 -14.02354 -13.79629 -13.62565 -13.57761 -13.46321 -13.10708 -13.05016 -12.93892 -12.84377 -12.75697 -12.27134 -12.12559 -12.03900 -11.96698 -11.95011 -11.83342 -11.75748 -11.39192 -10.89853 -10.85977 -9.90379 -9.79804 -9.63221 -8.96945 -7.92402 -5.21343 0.34148 0.49890 1.28057 1.48340 1.50499 1.58726 1.88954 2.58152 2.90600 3.06623 3.41538 3.45673 3.77162 3.80369 3.84608 3.90708 3.99328 4.01764 4.13910 4.26820 4.27454 4.35264 4.42111 4.48708 4.54840 4.60677 4.62455 4.65704 4.71647 4.76341 4.82103 4.90938 5.05192 5.09770 5.12154 5.15352 5.29109 5.37661 5.42689 5.47942 5.52910 5.56242 5.61833 5.65758 6.10500 6.19274 6.29420 6.87702 7.35197 8.12501 8.34610 9.31460 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009472 B = 0.004426 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.378697 B = 6325.288191 C = 8590.023846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.147 4.147 3 C 0.073 3.927 4 H 0.122 0.878 5 F -0.203 7.203 6 C 0.495 3.505 7 O -0.555 6.555 8 N -0.587 5.587 9 C 0.105 3.895 10 C -0.130 4.130 11 C 0.157 3.843 12 N -0.747 5.747 13 C -0.242 4.242 14 H 0.079 0.921 15 C -0.078 4.078 16 N -0.972 5.972 17 Si 0.973 3.027 18 H -0.288 1.288 19 H -0.297 1.297 20 H -0.266 1.266 21 C 0.154 3.846 22 C -0.115 4.115 23 C -0.107 4.107 24 C -0.137 4.137 25 C -0.124 4.124 26 C -0.136 4.136 27 C -0.109 4.109 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.031 0.969 38 H 0.021 0.979 39 H 0.370 0.630 40 H 0.250 0.750 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.410 -11.382 17.840 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.185 4.185 3 C 0.034 3.966 4 H 0.140 0.860 5 F -0.184 7.184 6 C 0.282 3.718 7 O -0.434 6.434 8 N -0.317 5.317 9 C -0.018 4.018 10 C -0.169 4.169 11 C 0.031 3.969 12 N -0.389 5.389 13 C -0.374 4.374 14 H 0.097 0.903 15 C -0.270 4.270 16 N -0.623 5.623 17 Si 0.802 3.198 18 H -0.216 1.216 19 H -0.223 1.223 20 H -0.191 1.191 21 C 0.033 3.967 22 C -0.116 4.116 23 C -0.126 4.126 24 C -0.155 4.155 25 C -0.142 4.142 26 C -0.154 4.154 27 C -0.128 4.128 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.039 0.961 39 H 0.201 0.799 40 H 0.058 0.942 41 H 0.110 0.890 42 H 0.133 0.867 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.620 -11.314 18.200 21.922 hybrid contribution -0.253 1.142 -1.147 1.638 sum 4.367 -10.172 17.053 20.331 Atomic orbital electron populations 1.21751 0.93248 1.03519 1.02491 1.22307 0.98595 0.91927 1.05648 1.22166 0.89506 0.97264 0.87659 0.86036 1.92910 1.89610 1.82992 1.52869 1.21339 0.90831 0.76798 0.82852 1.90673 1.70518 1.46816 1.35373 1.48037 1.06949 1.63631 1.13126 1.22051 0.99047 0.97106 0.83558 1.22070 1.00800 0.98826 0.95228 1.20691 0.97105 0.90292 0.88857 1.42588 1.65883 1.14334 1.16108 1.19668 1.25966 0.98602 0.93175 0.90336 1.25581 1.02749 0.96055 1.02579 1.69839 1.50225 1.04701 1.37524 0.85138 0.77576 0.77626 0.79427 1.21568 1.22344 1.19064 1.20571 0.78172 0.93656 1.04325 1.20308 1.00090 0.97825 0.93403 1.21215 0.97965 0.97350 0.96059 1.21399 0.99841 0.94437 0.99846 1.21428 0.99802 0.99938 0.93004 1.21405 0.99569 0.97164 0.97217 1.21324 0.97889 0.93985 0.99593 0.90131 0.91687 0.93086 0.88966 0.87975 0.87353 0.87771 0.93815 0.91686 0.95153 0.96095 0.79864 0.94152 0.88963 0.86660 0.85375 0.85682 0.84587 0.84646 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.79 71.98 0.70 -1.41 16 2 C -0.15 -2.16 5.37 30.59 0.16 -1.99 16 3 C 0.07 1.55 3.42 29.85 0.10 1.66 16 4 H 0.12 2.35 8.12 -2.39 -0.02 2.33 16 5 F -0.20 -5.66 13.07 44.97 0.59 -5.07 16 6 C 0.50 12.40 6.81 87.66 0.60 13.00 16 7 O -0.56 -16.58 14.98 -3.05 -0.05 -16.62 16 8 N -0.59 -13.22 2.48 -826.13 -2.05 -15.27 16 9 C 0.10 2.31 4.55 86.38 0.39 2.71 16 10 C -0.13 -4.16 5.36 30.60 0.16 -4.00 16 11 C 0.16 6.09 6.26 86.38 0.54 6.63 16 12 N -0.75 -38.58 5.60 -343.46 -1.92 -40.50 16 13 C -0.24 -13.62 9.99 84.03 0.84 -12.78 16 14 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 15 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 16 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 17 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 18 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 19 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 C 0.15 3.20 5.52 85.63 0.47 3.68 16 22 C -0.12 -2.97 5.39 -19.86 -0.11 -3.07 16 23 C -0.11 -2.91 7.86 22.27 0.18 -2.73 16 24 C -0.14 -3.84 10.05 22.27 0.22 -3.61 16 25 C -0.12 -3.22 10.05 22.27 0.22 -2.99 16 26 C -0.14 -3.49 10.05 22.27 0.22 -3.26 16 27 C -0.11 -2.97 9.16 22.27 0.20 -2.77 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.89 7.81 -2.39 -0.02 0.87 16 31 H 0.09 1.28 5.54 -2.39 -0.01 1.27 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.11 1.82 7.97 -2.39 -0.02 1.80 16 34 H 0.10 2.14 3.59 -2.39 -0.01 2.14 16 35 H 0.04 1.64 6.84 -2.39 -0.02 1.62 16 36 H 0.06 2.14 5.09 -2.39 -0.01 2.13 16 37 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.37 20.81 7.67 -92.71 -0.71 20.10 16 40 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 41 H 0.09 1.84 7.66 -2.39 -0.02 1.83 16 42 H 0.12 1.79 7.83 -2.39 -0.02 1.77 16 43 H 0.13 3.25 7.23 -2.91 -0.02 3.22 16 44 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 45 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 46 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 47 H 0.12 3.42 6.77 -2.91 -0.02 3.40 16 Total: -1.00 -71.77 378.32 4.53 -67.24 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: 0.26 Total: 37.22 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 5.39 Total: -15.01 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -3.69 Total: -116.14 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.05 Total: -16.62 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.59 Total: -5.07 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -71.77 4.53 -67.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755537708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.515 kcal (2) G-P(sol) polarization free energy of solvation -71.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds