Wall clock time and date at job start Tue Mar 31 2020 12:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 111.00092 * 2 1 4 4 C 1.53006 * 109.46755 * 66.04491 * 3 2 1 5 5 C 1.50701 * 109.46621 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00255 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99746 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00019 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00121 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46998 * 89.99935 * 9 7 5 11 11 H 1.48494 * 109.47614 * 210.00240 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00516 * 9 7 5 13 13 C 1.46903 * 110.99930 * 236.04784 * 2 1 3 14 14 C 1.52997 * 109.47001 * 288.03961 * 13 2 1 15 15 H 1.08995 * 110.72807 * 59.51123 * 14 13 2 16 16 C 1.54942 * 110.66599 * 296.41964 * 14 13 2 17 17 C 1.54599 * 102.92101 * 204.15391 * 16 14 13 18 18 H 1.08998 * 110.30511 * 263.04053 * 17 16 14 19 19 F 1.39900 * 110.30770 * 140.87058 * 17 16 14 20 20 C 1.53991 * 105.13935 * 21.95462 * 17 16 14 21 21 N 1.47905 * 107.22825 * 1.12571 * 20 17 16 22 22 C 1.46892 * 110.99980 * 214.25332 * 21 20 17 23 23 C 1.50696 * 109.46962 * 64.55562 * 22 21 20 24 24 N 1.31793 * 119.12279 * 269.72152 * 23 22 21 25 25 C 1.32331 * 120.81899 * 179.76140 * 24 23 22 26 26 C 1.38601 * 119.10619 * 0.50706 * 25 24 23 27 27 C 1.38594 * 118.39715 * 359.75276 * 26 25 24 28 28 N 1.31796 * 119.12533 * 90.00055 * 23 22 21 29 29 H 1.08997 * 109.47304 * 180.45766 * 1 2 3 30 30 H 1.09006 * 109.46913 * 300.45981 * 1 2 3 31 31 H 1.09007 * 109.47013 * 60.45475 * 1 2 3 32 32 H 1.08997 * 109.47284 * 186.04598 * 3 2 1 33 33 H 1.09002 * 109.47196 * 306.04929 * 3 2 1 34 34 H 1.08998 * 109.47101 * 299.99583 * 4 3 2 35 35 H 1.09002 * 109.46910 * 60.00264 * 4 3 2 36 36 H 0.97002 * 119.99817 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.46949 * 168.03693 * 13 2 1 38 38 H 1.08998 * 109.47084 * 48.03616 * 13 2 1 39 39 H 1.08996 * 110.72516 * 85.79075 * 16 14 13 40 40 H 1.09005 * 110.87344 * 322.58055 * 16 14 13 41 41 H 1.09001 * 109.91732 * 120.58247 * 20 17 16 42 42 H 1.08997 * 109.91568 * 241.67428 * 20 17 16 43 43 H 1.09004 * 109.46650 * 184.54954 * 22 21 20 44 44 H 1.09000 * 109.47495 * 304.55001 * 22 21 20 45 45 H 1.08007 * 120.45225 * 180.23739 * 25 24 23 46 46 H 1.08001 * 120.80153 * 179.77627 * 26 25 24 47 47 H 1.07999 * 120.45037 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1721 3.4641 1.3186 6 1 2.7201 3.8322 0.4638 7 6 1.9662 4.2816 2.4096 8 7 1.2984 3.8335 3.4503 9 14 2.6369 6.0250 2.4103 10 1 1.6210 6.9465 1.8409 11 1 2.9511 6.4341 3.8028 12 1 3.8718 6.0806 1.5875 13 6 1.9955 -0.7660 -1.1376 14 6 1.7612 -2.2590 -0.8993 15 1 0.6977 -2.4694 -0.7861 16 6 2.5498 -2.7448 0.3427 17 6 2.7201 -4.2578 0.0740 18 1 1.9499 -4.8240 0.5977 19 9 3.9921 -4.6817 0.4735 20 6 2.5576 -4.4165 -1.4490 21 7 2.3372 -3.0655 -2.0093 22 6 1.4243 -3.1149 -3.1590 23 6 0.0640 -3.5737 -2.7008 24 7 -0.2135 -4.8621 -2.7050 25 6 -1.3957 -5.3023 -2.3052 26 6 -2.3501 -4.3876 -1.8888 27 6 -2.0231 -3.0409 -1.9035 28 7 -0.8186 -2.6754 -2.3118 29 1 -0.3634 -1.0276 0.0082 30 1 -0.3633 0.5210 0.8859 31 1 -0.3633 0.5068 -0.8941 32 1 3.0798 1.3444 -0.1082 33 1 1.5611 1.9274 -0.8309 34 1 0.5472 2.0845 1.4265 35 1 2.0658 1.5015 2.1492 36 1 1.1532 4.4088 4.2177 37 1 3.0642 -0.5775 -1.2391 38 1 1.4842 -0.4591 -2.0500 39 1 1.9759 -2.5771 1.2540 40 1 3.5204 -2.2523 0.4037 41 1 3.4611 -4.8525 -1.8754 42 1 1.7000 -5.0531 -1.6666 43 1 1.3430 -2.1219 -3.6012 44 1 1.8121 -3.8126 -3.9013 45 1 -1.6154 -6.3598 -2.3075 46 1 -3.3251 -4.7165 -1.5604 47 1 -2.7415 -2.2998 -1.5855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348113033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:43 Heat of formation + Delta-G solvation = 19.162065 kcal Electronic energy + Delta-G solvation = -28062.108306 eV Core-core repulsion = 24194.803093 eV Total energy + Delta-G solvation = -3867.305213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -47.62494 -41.60399 -39.06336 -36.73368 -34.09928 -33.57200 -32.99084 -31.03586 -30.52848 -28.78972 -26.77835 -26.24641 -24.94690 -24.81895 -23.24717 -22.40386 -21.09593 -20.00282 -19.72062 -17.84899 -17.31601 -17.22118 -16.37967 -16.14418 -15.77695 -15.38543 -15.20794 -14.84159 -14.52494 -14.44506 -14.13681 -14.01691 -13.95304 -13.70318 -13.32503 -13.11460 -12.59527 -12.29667 -12.12485 -11.89810 -11.69004 -11.53498 -11.40112 -11.24001 -11.09715 -10.99505 -10.87117 -10.80084 -10.63790 -10.52532 -10.44605 -9.94361 -9.79074 -9.57591 -9.32283 -9.08116 -8.73642 -8.29407 -7.63800 -5.96229 -3.98053 0.48233 0.71841 3.30372 3.34403 3.40634 3.44316 3.50495 3.73022 3.78317 4.21797 4.23824 4.47187 4.48921 4.54898 4.62451 4.70867 4.73247 4.83376 4.98649 5.08129 5.13638 5.38100 5.39810 5.42272 5.45541 5.49305 5.67954 5.70642 5.84388 5.96644 6.01130 6.02356 6.10290 6.13147 6.27485 6.37630 6.52642 6.58459 6.61495 6.64445 6.75038 7.03467 7.56892 7.64136 7.72646 7.84883 7.95605 8.13077 8.48298 9.09391 9.65331 11.15180 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.003070 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.075376 B = 9119.669797 C =10112.298926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.540 5.540 3 C 0.066 3.934 4 C 0.029 3.971 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.076 3.924 14 C 0.068 3.932 15 H 0.068 0.932 16 C -0.129 4.129 17 C 0.077 3.923 18 H 0.082 0.918 19 F -0.207 7.207 20 C 0.000 4.000 21 N -0.492 5.492 22 C 0.112 3.888 23 C 0.283 3.717 24 N -0.513 5.513 25 C 0.143 3.857 26 C -0.229 4.229 27 C 0.149 3.851 28 N -0.498 5.498 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.019 0.981 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.016 0.984 35 H 0.024 0.976 36 H 0.260 0.740 37 H 0.076 0.924 38 H 0.033 0.967 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.167 0.833 46 H 0.148 0.852 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.613 -21.303 -12.569 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.264 5.264 3 C -0.061 4.061 4 C -0.009 4.009 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.053 4.053 14 C -0.040 4.040 15 H 0.086 0.914 16 C -0.168 4.168 17 C 0.040 3.960 18 H 0.100 0.900 19 F -0.188 7.188 20 C -0.128 4.128 21 N -0.215 5.215 22 C -0.019 4.019 23 C 0.014 3.986 24 N -0.228 5.228 25 C -0.023 4.023 26 C -0.251 4.251 27 C -0.017 4.017 28 N -0.213 5.213 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.034 0.966 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.185 0.815 46 H 0.165 0.835 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.067 -20.951 -12.468 24.901 hybrid contribution -1.808 0.612 -0.038 1.909 sum -6.876 -20.339 -12.505 24.846 Atomic orbital electron populations 1.22325 0.88187 1.00150 1.00895 1.61978 1.07489 1.15927 1.41030 1.22335 0.98492 0.85027 1.00263 1.19084 0.96804 0.93960 0.91004 1.21211 1.34971 0.97844 1.01881 0.92817 1.24987 0.95351 0.98409 0.95575 1.69975 1.40987 1.36310 1.06064 0.86610 0.79354 0.84941 0.77181 1.20769 1.21242 1.19867 1.21809 1.00515 0.90651 0.92277 1.22944 0.97530 0.94683 0.88801 0.91449 1.23030 1.03084 0.91900 0.98739 1.22471 0.81280 0.97245 0.94981 0.89980 1.92825 1.42405 1.91499 1.92027 1.23669 1.03928 0.91670 0.93536 1.65073 1.39965 1.09701 1.06733 1.21417 0.82338 1.03365 0.94745 1.24347 0.97116 0.85134 0.91998 1.68355 1.20884 1.17543 1.16007 1.23271 0.88136 1.00918 0.89934 1.22951 1.02693 0.95830 1.03611 1.23376 0.92958 0.95042 0.90331 1.68475 1.02545 1.39257 1.10980 0.93107 0.90857 0.96240 0.92151 0.96290 0.96558 0.95792 0.93075 0.90531 0.94860 0.89319 0.88839 0.88686 0.90614 0.87573 0.87947 0.81546 0.83457 0.81299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.15 60.07 0.55 1.11 16 2 N -0.54 -9.79 4.46 -242.90 -1.08 -10.87 16 3 C 0.07 1.40 4.89 -3.82 -0.02 1.38 16 4 C 0.03 0.76 4.90 -27.88 -0.14 0.62 16 5 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 6 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.08 1.17 4.65 -3.82 -0.02 1.16 16 14 C 0.07 0.91 2.03 -65.63 -0.13 0.78 16 15 H 0.07 0.93 3.97 -51.93 -0.21 0.72 16 16 C -0.13 -1.77 6.05 -24.87 -0.15 -1.92 16 17 C 0.08 0.93 4.78 -25.37 -0.12 0.81 16 18 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 19 F -0.21 -2.87 17.09 2.25 0.04 -2.83 16 20 C 0.00 0.00 6.31 -2.75 -0.02 -0.01 16 21 N -0.49 -5.83 5.24 -223.84 -1.17 -7.00 16 22 C 0.11 1.17 5.80 -4.98 -0.03 1.14 16 23 C 0.28 3.04 5.33 -157.20 -0.84 2.20 16 24 N -0.51 -5.02 8.62 -10.72 -0.09 -5.12 16 25 C 0.14 1.04 11.30 -17.20 -0.19 0.85 16 26 C -0.23 -1.48 10.17 -39.32 -0.40 -1.88 16 27 C 0.15 1.26 11.30 -17.20 -0.19 1.06 16 28 N -0.50 -5.49 8.74 -10.73 -0.09 -5.58 16 29 H 0.05 0.76 6.61 -51.93 -0.34 0.42 16 30 H 0.07 1.38 6.45 -51.93 -0.33 1.05 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 1.29 7.86 -51.93 -0.41 0.88 16 33 H 0.02 0.41 8.12 -51.93 -0.42 -0.02 16 34 H 0.02 0.45 6.54 -51.93 -0.34 0.11 16 35 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.08 1.22 7.81 -51.93 -0.41 0.82 16 38 H 0.03 0.51 7.59 -51.93 -0.39 0.12 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 1.41 8.04 -51.93 -0.42 1.00 16 41 H 0.09 1.03 8.02 -51.93 -0.42 0.61 16 42 H 0.08 0.81 5.51 -51.93 -0.29 0.52 16 43 H 0.11 1.12 7.69 -51.93 -0.40 0.72 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.17 0.68 8.06 -52.48 -0.42 0.26 16 46 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 47 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -32.20 374.68 -10.45 -42.65 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.30 Total: -1.09 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -2.11 Total: -6.33 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -1.71 Total: -54.88 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.20 -10.45 -42.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348113033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.814 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds