Wall clock time and date at job start Tue Mar 31 2020 12:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 111.00092 * 2 1 4 4 C 1.53006 * 109.46755 * 66.04491 * 3 2 1 5 5 C 1.50701 * 109.46621 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00255 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99746 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00019 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00121 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46998 * 89.99935 * 9 7 5 11 11 H 1.48494 * 109.47614 * 210.00240 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00516 * 9 7 5 13 13 C 1.46903 * 110.99930 * 236.04784 * 2 1 3 14 14 C 1.52997 * 109.47001 * 288.03961 * 13 2 1 15 15 H 1.08995 * 110.72807 * 59.51123 * 14 13 2 16 16 C 1.54942 * 110.66599 * 296.41964 * 14 13 2 17 17 C 1.54599 * 102.92101 * 204.15391 * 16 14 13 18 18 H 1.08998 * 110.30511 * 263.04053 * 17 16 14 19 19 F 1.39900 * 110.30770 * 140.87058 * 17 16 14 20 20 C 1.53991 * 105.13935 * 21.95462 * 17 16 14 21 21 N 1.47905 * 107.22825 * 1.12571 * 20 17 16 22 22 C 1.46892 * 110.99980 * 214.25332 * 21 20 17 23 23 C 1.50696 * 109.46962 * 64.55562 * 22 21 20 24 24 N 1.31793 * 119.12279 * 269.72152 * 23 22 21 25 25 C 1.32331 * 120.81899 * 179.76140 * 24 23 22 26 26 C 1.38601 * 119.10619 * 0.50706 * 25 24 23 27 27 C 1.38594 * 118.39715 * 359.75276 * 26 25 24 28 28 N 1.31796 * 119.12533 * 90.00055 * 23 22 21 29 29 H 1.08997 * 109.47304 * 180.45766 * 1 2 3 30 30 H 1.09006 * 109.46913 * 300.45981 * 1 2 3 31 31 H 1.09007 * 109.47013 * 60.45475 * 1 2 3 32 32 H 1.08997 * 109.47284 * 186.04598 * 3 2 1 33 33 H 1.09002 * 109.47196 * 306.04929 * 3 2 1 34 34 H 1.08998 * 109.47101 * 299.99583 * 4 3 2 35 35 H 1.09002 * 109.46910 * 60.00264 * 4 3 2 36 36 H 0.97002 * 119.99817 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.46949 * 168.03693 * 13 2 1 38 38 H 1.08998 * 109.47084 * 48.03616 * 13 2 1 39 39 H 1.08996 * 110.72516 * 85.79075 * 16 14 13 40 40 H 1.09005 * 110.87344 * 322.58055 * 16 14 13 41 41 H 1.09001 * 109.91732 * 120.58247 * 20 17 16 42 42 H 1.08997 * 109.91568 * 241.67428 * 20 17 16 43 43 H 1.09004 * 109.46650 * 184.54954 * 22 21 20 44 44 H 1.09000 * 109.47495 * 304.55001 * 22 21 20 45 45 H 1.08007 * 120.45225 * 180.23739 * 25 24 23 46 46 H 1.08001 * 120.80153 * 179.77627 * 26 25 24 47 47 H 1.07999 * 120.45037 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1721 3.4641 1.3186 6 1 2.7201 3.8322 0.4638 7 6 1.9662 4.2816 2.4096 8 7 1.2984 3.8335 3.4503 9 14 2.6369 6.0250 2.4103 10 1 1.6210 6.9465 1.8409 11 1 2.9511 6.4341 3.8028 12 1 3.8718 6.0806 1.5875 13 6 1.9955 -0.7660 -1.1376 14 6 1.7612 -2.2590 -0.8993 15 1 0.6977 -2.4694 -0.7861 16 6 2.5498 -2.7448 0.3427 17 6 2.7201 -4.2578 0.0740 18 1 1.9499 -4.8240 0.5977 19 9 3.9921 -4.6817 0.4735 20 6 2.5576 -4.4165 -1.4490 21 7 2.3372 -3.0655 -2.0093 22 6 1.4243 -3.1149 -3.1590 23 6 0.0640 -3.5737 -2.7008 24 7 -0.2135 -4.8621 -2.7050 25 6 -1.3957 -5.3023 -2.3052 26 6 -2.3501 -4.3876 -1.8888 27 6 -2.0231 -3.0409 -1.9035 28 7 -0.8186 -2.6754 -2.3118 29 1 -0.3634 -1.0276 0.0082 30 1 -0.3633 0.5210 0.8859 31 1 -0.3633 0.5068 -0.8941 32 1 3.0798 1.3444 -0.1082 33 1 1.5611 1.9274 -0.8309 34 1 0.5472 2.0845 1.4265 35 1 2.0658 1.5015 2.1492 36 1 1.1532 4.4088 4.2177 37 1 3.0642 -0.5775 -1.2391 38 1 1.4842 -0.4591 -2.0500 39 1 1.9759 -2.5771 1.2540 40 1 3.5204 -2.2523 0.4037 41 1 3.4611 -4.8525 -1.8754 42 1 1.7000 -5.0531 -1.6666 43 1 1.3430 -2.1219 -3.6012 44 1 1.8121 -3.8126 -3.9013 45 1 -1.6154 -6.3598 -2.3075 46 1 -3.3251 -4.7165 -1.5604 47 1 -2.7415 -2.2998 -1.5855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348113033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:43 Heat of formation + Delta-G solvation = -2.436615 kcal Electronic energy + Delta-G solvation = -28063.044895 eV Core-core repulsion = 24194.803093 eV Total energy + Delta-G solvation = -3868.241802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.67270 -42.27365 -40.07642 -38.18880 -35.20116 -34.72414 -34.27434 -32.27880 -31.72082 -30.31045 -27.88129 -27.50180 -26.51518 -25.49196 -24.38144 -23.64065 -22.15340 -21.55826 -20.96900 -18.63994 -18.49095 -18.11161 -17.93187 -17.12402 -16.65546 -16.49260 -16.39824 -16.26061 -16.02276 -15.61788 -15.26783 -15.00630 -14.86103 -14.62156 -14.53064 -14.38455 -14.09035 -13.79394 -13.41488 -13.25074 -12.97479 -12.86159 -12.74296 -12.63451 -12.53404 -12.29893 -12.12824 -11.96577 -11.81952 -11.77894 -11.61645 -11.59619 -11.28641 -11.18656 -10.53395 -10.51956 -10.22139 -9.66580 -9.13957 -8.18361 -6.29064 -0.12130 0.13316 1.40829 1.42390 1.53562 2.40119 2.51421 2.79508 2.92788 3.15061 3.18120 3.24528 3.41615 3.47916 3.54117 3.75618 3.86026 4.03828 4.13129 4.19931 4.25446 4.31532 4.35218 4.37550 4.42704 4.48525 4.58519 4.67267 4.72930 4.76708 4.79717 4.87803 4.90392 4.92838 5.01944 5.06829 5.12797 5.17663 5.44109 5.48054 5.66735 5.69946 5.76777 5.83374 6.03849 6.12608 6.31221 6.36490 6.87965 7.08661 7.39643 8.93699 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.003070 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.075376 B = 9119.669797 C =10112.298926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.547 5.547 3 C 0.082 3.918 4 C 0.039 3.961 5 C -0.544 4.544 6 H 0.058 0.942 7 C 0.002 3.998 8 N -0.931 5.931 9 Si 0.965 3.035 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.264 1.264 13 C 0.083 3.917 14 C 0.080 3.920 15 H 0.068 0.932 16 C -0.132 4.132 17 C 0.080 3.920 18 H 0.100 0.900 19 F -0.217 7.217 20 C 0.009 3.991 21 N -0.498 5.498 22 C 0.113 3.887 23 C 0.267 3.733 24 N -0.526 5.526 25 C 0.135 3.865 26 C -0.213 4.213 27 C 0.129 3.871 28 N -0.527 5.527 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.022 0.978 32 H 0.060 0.940 33 H 0.019 0.981 34 H -0.004 1.004 35 H -0.008 1.008 36 H 0.263 0.737 37 H 0.069 0.931 38 H 0.036 0.964 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.115 0.885 45 H 0.199 0.801 46 H 0.181 0.819 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 -22.302 -13.630 27.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.271 5.271 3 C -0.045 4.045 4 C 0.001 3.999 5 C -0.583 4.583 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.571 5.571 9 Si 0.789 3.211 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.188 1.188 13 C -0.045 4.045 14 C -0.028 4.028 15 H 0.086 0.914 16 C -0.170 4.170 17 C 0.043 3.957 18 H 0.118 0.882 19 F -0.198 7.198 20 C -0.120 4.120 21 N -0.221 5.221 22 C -0.017 4.017 23 C -0.002 4.002 24 N -0.241 5.241 25 C -0.030 4.030 26 C -0.234 4.234 27 C -0.036 4.036 28 N -0.242 5.242 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.014 0.986 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.118 0.882 42 H 0.102 0.898 43 H 0.118 0.882 44 H 0.133 0.867 45 H 0.216 0.784 46 H 0.199 0.801 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.792 -21.969 -13.548 26.453 hybrid contribution -1.680 0.838 0.291 1.900 sum -7.472 -21.131 -13.257 26.040 Atomic orbital electron populations 1.22210 0.87334 1.01165 0.99745 1.61879 1.08270 1.14154 1.42835 1.21966 0.98511 0.86597 0.97435 1.18896 0.95050 0.93524 0.92390 1.21634 1.35267 0.99050 1.02301 0.92332 1.25936 0.95458 1.03143 0.95043 1.70108 1.42059 1.38138 1.06781 0.85457 0.79024 0.79159 0.77459 1.19720 1.20732 1.18820 1.21754 0.99844 0.91738 0.91156 1.22700 0.97507 0.93300 0.89268 0.91385 1.22975 1.01991 0.93387 0.98665 1.22551 0.81128 0.96031 0.95989 0.88176 1.92804 1.43310 1.91483 1.92227 1.23621 1.04465 0.91299 0.92567 1.65017 1.40552 1.10003 1.06518 1.21383 0.82623 1.03495 0.94203 1.24179 0.97138 0.85683 0.93195 1.68339 1.22282 1.16987 1.16541 1.23892 0.87418 1.02632 0.89027 1.23295 1.03796 0.94725 1.01617 1.23790 0.92594 0.96655 0.90515 1.68410 1.03706 1.40046 1.12008 0.90929 0.93320 0.95933 0.92158 0.96282 0.98583 0.98987 0.92803 0.91216 0.94542 0.90213 0.90670 0.88228 0.89751 0.88168 0.86708 0.78398 0.80129 0.79820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 9.15 127.69 1.17 2.66 16 2 N -0.55 -20.19 4.46 -922.41 -4.11 -24.30 16 3 C 0.08 3.61 4.89 86.30 0.42 4.03 16 4 C 0.04 2.11 4.90 29.85 0.15 2.26 16 5 C -0.54 -31.63 9.11 25.60 0.23 -31.39 16 6 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 7 C 0.00 0.12 5.46 84.65 0.46 0.59 16 8 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 9 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 13 C 0.08 2.57 4.65 86.30 0.40 2.97 16 14 C 0.08 2.11 2.03 45.21 0.09 2.20 16 15 H 0.07 1.82 3.97 -2.39 -0.01 1.81 16 16 C -0.13 -3.62 6.05 31.80 0.19 -3.42 16 17 C 0.08 1.84 4.78 31.47 0.15 1.99 16 18 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16 19 F -0.22 -5.87 17.09 44.97 0.77 -5.10 16 20 C 0.01 0.18 6.31 86.44 0.55 0.72 16 21 N -0.50 -11.36 5.24 -862.10 -4.52 -15.88 16 22 C 0.11 2.25 5.80 85.56 0.50 2.75 16 23 C 0.27 5.38 5.33 138.75 0.74 6.12 16 24 N -0.53 -9.20 8.62 -187.84 -1.62 -10.82 16 25 C 0.14 1.56 11.30 84.70 0.96 2.52 16 26 C -0.21 -2.10 10.17 22.44 0.23 -1.88 16 27 C 0.13 1.94 11.30 84.70 0.96 2.90 16 28 N -0.53 -10.97 8.74 -187.85 -1.64 -12.61 16 29 H 0.07 2.15 6.61 -2.39 -0.02 2.14 16 30 H 0.05 1.90 6.45 -2.38 -0.02 1.88 16 31 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.06 2.62 7.86 -2.39 -0.02 2.60 16 33 H 0.02 0.83 8.12 -2.39 -0.02 0.81 16 34 H 0.00 -0.24 6.54 -2.39 -0.02 -0.25 16 35 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.07 2.24 7.81 -2.39 -0.02 2.22 16 38 H 0.04 1.11 7.59 -2.39 -0.02 1.09 16 39 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.07 2.33 8.04 -2.38 -0.02 2.31 16 41 H 0.10 2.00 8.02 -2.39 -0.02 1.98 16 42 H 0.08 1.64 5.51 -2.39 -0.01 1.63 16 43 H 0.10 2.07 7.69 -2.38 -0.02 2.05 16 44 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.20 0.86 8.06 -2.91 -0.02 0.83 16 46 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 47 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -70.31 374.68 -0.66 -70.97 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.96 Total: 12.92 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 7.19 Total: -5.00 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -11.61 Total: -120.70 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.77 Total: -5.10 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -70.31 -0.66 -70.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348113033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.529 kcal (2) G-P(sol) polarization free energy of solvation -70.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds