Wall clock time and date at job start Tue Mar 31 2020 12:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00151 * 2 1 4 4 C 1.53000 * 109.47053 * 66.04327 * 3 2 1 5 5 C 1.50703 * 109.47283 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99540 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00283 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99912 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00277 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47107 * 60.00096 * 9 7 5 11 11 H 1.48498 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46975 * 300.00360 * 9 7 5 13 13 C 1.46899 * 111.00211 * 236.04213 * 2 1 3 14 14 C 1.52995 * 109.47678 * 287.88025 * 13 2 1 15 15 H 1.09009 * 110.33276 * 52.55678 * 14 13 2 16 16 C 1.54903 * 110.37310 * 290.18995 * 14 13 2 17 17 C 1.55133 * 101.65435 * 204.09723 * 16 14 13 18 18 H 1.09004 * 110.70923 * 154.03330 * 17 16 14 19 19 F 1.39898 * 110.70857 * 277.26836 * 17 16 14 20 20 C 1.54316 * 103.02185 * 35.65278 * 17 16 14 21 21 N 1.47446 * 107.23188 * 337.71751 * 20 17 16 22 22 C 1.46903 * 111.00136 * 236.74455 * 21 20 17 23 23 C 1.50697 * 109.47109 * 64.92944 * 22 21 20 24 24 N 1.31799 * 119.12562 * 269.73274 * 23 22 21 25 25 C 1.32329 * 120.81670 * 179.76273 * 24 23 22 26 26 C 1.38591 * 119.10863 * 0.50268 * 25 24 23 27 27 C 1.38598 * 118.40035 * 359.75363 * 26 25 24 28 28 N 1.31800 * 119.12013 * 90.00519 * 23 22 21 29 29 H 1.09004 * 109.47123 * 177.96674 * 1 2 3 30 30 H 1.08999 * 109.47134 * 297.96990 * 1 2 3 31 31 H 1.09003 * 109.47114 * 57.97533 * 1 2 3 32 32 H 1.08998 * 109.47140 * 186.04280 * 3 2 1 33 33 H 1.08997 * 109.46836 * 306.04833 * 3 2 1 34 34 H 1.08998 * 109.47109 * 299.99972 * 4 3 2 35 35 H 1.08998 * 109.47429 * 60.00002 * 4 3 2 36 36 H 0.96995 * 120.00187 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.47409 * 167.87436 * 13 2 1 38 38 H 1.09007 * 109.46900 * 47.88182 * 13 2 1 39 39 H 1.09006 * 110.99499 * 86.00269 * 16 14 13 40 40 H 1.09004 * 110.99143 * 322.19384 * 16 14 13 41 41 H 1.09001 * 109.89317 * 97.11565 * 20 17 16 42 42 H 1.09002 * 109.89156 * 218.14981 * 20 17 16 43 43 H 1.09002 * 109.47309 * 184.93258 * 22 21 20 44 44 H 1.08997 * 109.46718 * 304.92981 * 22 21 20 45 45 H 1.08002 * 120.44511 * 180.22849 * 25 24 23 46 46 H 1.07998 * 120.80473 * 179.77420 * 26 25 24 47 47 H 1.08001 * 120.45135 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1710 3.4646 1.3180 6 1 2.7184 3.8328 0.4630 7 6 1.9649 4.2821 2.4089 8 7 1.2979 3.8338 3.4499 9 14 2.6343 6.0260 2.4090 10 1 2.0431 6.7832 1.2765 11 1 2.2808 6.6919 3.6884 12 1 4.1116 5.9892 2.2622 13 6 1.9955 -0.7660 -1.1375 14 6 1.7649 -2.2593 -0.8974 15 1 0.7174 -2.4478 -0.6618 16 6 2.6773 -2.7689 0.2460 17 6 2.7781 -4.2814 -0.0838 18 1 3.7021 -4.7018 0.3133 19 9 1.6663 -4.9709 0.4117 20 6 2.7889 -4.3007 -1.6268 21 7 2.1743 -3.0408 -2.0838 22 6 1.0270 -3.3031 -2.9629 23 6 -0.0583 -3.9953 -2.1793 24 7 -0.0743 -5.3124 -2.1312 25 6 -1.0090 -5.9545 -1.4492 26 6 -1.9845 -5.2236 -0.7897 27 6 -1.9376 -3.8406 -0.8678 28 7 -0.9694 -3.2677 -1.5648 29 1 -0.3633 -1.0271 -0.0365 30 1 -0.3633 0.4820 0.9076 31 1 -0.3633 0.5450 -0.8713 32 1 3.0798 1.3443 -0.1082 33 1 1.5611 1.9273 -0.8309 34 1 0.5472 2.0845 1.4264 35 1 2.0657 1.5016 2.1492 36 1 1.1532 4.4088 4.2176 37 1 3.0637 -0.5754 -1.2408 38 1 1.4822 -0.4612 -2.0496 39 1 2.2099 -2.6115 1.2182 40 1 3.6575 -2.2939 0.2045 41 1 3.8146 -4.3658 -1.9898 42 1 2.2121 -5.1509 -1.9911 43 1 0.6466 -2.3600 -3.3552 44 1 1.3410 -3.9403 -3.7896 45 1 -1.0143 -7.0338 -1.4108 46 1 -2.7623 -5.7196 -0.2282 47 1 -2.6813 -3.2385 -0.3669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348113037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:47 Heat of formation + Delta-G solvation = 18.694840 kcal Electronic energy + Delta-G solvation = -28364.832541 eV Core-core repulsion = 24497.507068 eV Total energy + Delta-G solvation = -3867.325473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.69608 -41.40563 -38.97361 -36.70018 -33.93433 -33.46623 -32.96820 -30.95664 -30.54290 -28.79437 -26.75925 -26.22941 -24.88121 -24.70730 -23.10495 -22.32016 -21.18505 -19.89968 -19.71915 -17.71371 -17.17137 -17.01390 -16.37919 -16.28916 -15.63989 -15.40551 -15.21521 -14.79291 -14.47782 -14.41078 -14.19204 -14.00160 -13.80956 -13.47513 -13.36049 -12.87449 -12.59998 -12.35125 -12.10312 -11.78328 -11.65802 -11.51281 -11.29654 -11.16155 -11.05319 -10.97545 -10.92573 -10.80016 -10.69420 -10.49028 -10.36535 -9.79776 -9.77181 -9.42971 -9.31725 -9.08496 -8.58807 -8.28616 -7.60441 -5.95406 -3.97466 0.65383 0.89085 3.36089 3.40200 3.42375 3.44682 3.62875 3.81660 3.93033 4.21219 4.38666 4.39993 4.47753 4.64980 4.76424 4.80335 4.86310 4.87754 5.09942 5.12523 5.21047 5.35507 5.40362 5.52166 5.54848 5.59285 5.69928 5.77770 5.88695 5.99762 6.09850 6.13005 6.13910 6.16849 6.24635 6.41641 6.56585 6.62948 6.73994 6.78470 6.84586 7.04838 7.59907 7.67125 7.86481 7.87850 7.97082 8.14432 8.49108 9.09902 9.65778 11.15984 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.020228 B = 0.002921 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.907846 B = 9584.882051 C =10002.242031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.541 5.541 3 C 0.066 3.934 4 C 0.029 3.971 5 C -0.521 4.521 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.077 3.923 14 C 0.061 3.939 15 H 0.087 0.913 16 C -0.134 4.134 17 C 0.059 3.941 18 H 0.094 0.906 19 F -0.212 7.212 20 C 0.008 3.992 21 N -0.505 5.505 22 C 0.115 3.885 23 C 0.285 3.715 24 N -0.508 5.508 25 C 0.150 3.850 26 C -0.228 4.228 27 C 0.149 3.851 28 N -0.502 5.502 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.017 0.983 32 H 0.059 0.941 33 H 0.019 0.981 34 H 0.016 0.984 35 H 0.023 0.977 36 H 0.260 0.740 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.164 0.836 46 H 0.145 0.855 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.434 -22.469 -11.246 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.266 5.266 3 C -0.061 4.061 4 C -0.008 4.008 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.052 4.052 14 C -0.046 4.046 15 H 0.104 0.896 16 C -0.172 4.172 17 C 0.022 3.978 18 H 0.112 0.888 19 F -0.193 7.193 20 C -0.120 4.120 21 N -0.228 5.228 22 C -0.015 4.015 23 C 0.016 3.984 24 N -0.223 5.223 25 C -0.016 4.016 26 C -0.250 4.250 27 C -0.017 4.017 28 N -0.217 5.217 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.182 0.818 46 H 0.163 0.837 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.270 -21.904 -11.463 24.827 hybrid contribution -1.416 0.365 0.476 1.538 sum -3.686 -21.540 -10.987 24.459 Atomic orbital electron populations 1.22384 0.88034 1.00665 1.00930 1.61968 1.07633 1.15816 1.41147 1.22332 0.98383 0.85140 1.00260 1.19074 0.96870 0.93899 0.90988 1.21178 1.35098 0.97864 1.01866 0.92883 1.24985 0.95334 0.98391 0.95593 1.69963 1.40882 1.36456 1.06028 0.86670 0.79452 0.84789 0.77142 1.20319 1.21324 1.20247 1.21840 1.00239 0.91031 0.92100 1.22923 0.99945 0.94305 0.87446 0.89571 1.23230 1.02031 0.91811 1.00134 1.22895 0.86624 0.93504 0.94781 0.88762 1.92799 1.56147 1.81191 1.89144 1.23615 1.02177 0.93107 0.93087 1.63804 1.24750 1.15879 1.18352 1.21415 0.85387 1.00148 0.94552 1.24248 0.93776 0.86972 0.93421 1.68257 1.24475 1.10597 1.18942 1.23154 0.88346 1.00892 0.89231 1.22886 1.02258 0.96752 1.03103 1.23303 0.94066 0.92723 0.91629 1.68385 1.03246 1.41412 1.08647 0.92221 0.90917 0.96423 0.92257 0.96318 0.96531 0.95846 0.93010 0.90850 0.95113 0.89133 0.88814 0.88681 0.89374 0.87935 0.88122 0.81842 0.83686 0.81496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.13 60.07 0.55 1.05 16 2 N -0.54 -10.06 4.59 -242.92 -1.12 -11.18 16 3 C 0.07 1.42 4.89 -3.82 -0.02 1.40 16 4 C 0.03 0.77 4.90 -27.88 -0.14 0.63 16 5 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 6 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.08 1.20 4.74 -3.83 -0.02 1.18 16 14 C 0.06 0.85 2.25 -66.19 -0.15 0.70 16 15 H 0.09 1.30 3.38 -51.92 -0.18 1.12 16 16 C -0.13 -1.78 6.18 -24.60 -0.15 -1.93 16 17 C 0.06 0.68 4.75 -24.91 -0.12 0.56 16 18 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 19 F -0.21 -2.92 17.19 2.25 0.04 -2.88 16 20 C 0.01 0.09 6.24 -2.84 -0.02 0.07 16 21 N -0.51 -5.98 5.07 -224.81 -1.14 -7.12 16 22 C 0.12 1.27 5.71 -4.98 -0.03 1.24 16 23 C 0.29 3.38 5.64 -157.19 -0.89 2.50 16 24 N -0.51 -5.64 8.87 -10.73 -0.10 -5.73 16 25 C 0.15 1.34 11.30 -17.21 -0.19 1.15 16 26 C -0.23 -1.86 10.17 -39.32 -0.40 -2.26 16 27 C 0.15 1.48 11.31 -17.20 -0.19 1.28 16 28 N -0.50 -6.18 8.47 -10.72 -0.09 -6.27 16 29 H 0.06 0.97 6.43 -51.93 -0.33 0.64 16 30 H 0.07 1.43 6.57 -51.93 -0.34 1.09 16 31 H 0.02 0.31 8.13 -51.93 -0.42 -0.12 16 32 H 0.06 1.26 7.86 -51.93 -0.41 0.85 16 33 H 0.02 0.41 8.11 -51.93 -0.42 -0.02 16 34 H 0.02 0.46 6.60 -51.93 -0.34 0.12 16 35 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.07 1.15 7.69 -51.93 -0.40 0.75 16 38 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.09 1.21 7.97 -51.93 -0.41 0.79 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.97 5.93 -51.93 -0.31 0.66 16 43 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.10 0.95 8.13 -51.93 -0.42 0.53 16 45 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 46 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 47 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -32.65 375.88 -10.53 -43.18 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.33 Total: 0.03 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.18 Total: -6.11 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -1.70 Total: -56.75 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.65 -10.53 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348113037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.872 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds