Wall clock time and date at job start Tue Mar 31 2020 12:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00151 * 2 1 4 4 C 1.53000 * 109.47053 * 66.04327 * 3 2 1 5 5 C 1.50703 * 109.47283 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99540 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00283 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99912 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00277 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47107 * 60.00096 * 9 7 5 11 11 H 1.48498 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46975 * 300.00360 * 9 7 5 13 13 C 1.46899 * 111.00211 * 236.04213 * 2 1 3 14 14 C 1.52995 * 109.47678 * 287.88025 * 13 2 1 15 15 H 1.09009 * 110.33276 * 52.55678 * 14 13 2 16 16 C 1.54903 * 110.37310 * 290.18995 * 14 13 2 17 17 C 1.55133 * 101.65435 * 204.09723 * 16 14 13 18 18 H 1.09004 * 110.70923 * 154.03330 * 17 16 14 19 19 F 1.39898 * 110.70857 * 277.26836 * 17 16 14 20 20 C 1.54316 * 103.02185 * 35.65278 * 17 16 14 21 21 N 1.47446 * 107.23188 * 337.71751 * 20 17 16 22 22 C 1.46903 * 111.00136 * 236.74455 * 21 20 17 23 23 C 1.50697 * 109.47109 * 64.92944 * 22 21 20 24 24 N 1.31799 * 119.12562 * 269.73274 * 23 22 21 25 25 C 1.32329 * 120.81670 * 179.76273 * 24 23 22 26 26 C 1.38591 * 119.10863 * 0.50268 * 25 24 23 27 27 C 1.38598 * 118.40035 * 359.75363 * 26 25 24 28 28 N 1.31800 * 119.12013 * 90.00519 * 23 22 21 29 29 H 1.09004 * 109.47123 * 177.96674 * 1 2 3 30 30 H 1.08999 * 109.47134 * 297.96990 * 1 2 3 31 31 H 1.09003 * 109.47114 * 57.97533 * 1 2 3 32 32 H 1.08998 * 109.47140 * 186.04280 * 3 2 1 33 33 H 1.08997 * 109.46836 * 306.04833 * 3 2 1 34 34 H 1.08998 * 109.47109 * 299.99972 * 4 3 2 35 35 H 1.08998 * 109.47429 * 60.00002 * 4 3 2 36 36 H 0.96995 * 120.00187 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.47409 * 167.87436 * 13 2 1 38 38 H 1.09007 * 109.46900 * 47.88182 * 13 2 1 39 39 H 1.09006 * 110.99499 * 86.00269 * 16 14 13 40 40 H 1.09004 * 110.99143 * 322.19384 * 16 14 13 41 41 H 1.09001 * 109.89317 * 97.11565 * 20 17 16 42 42 H 1.09002 * 109.89156 * 218.14981 * 20 17 16 43 43 H 1.09002 * 109.47309 * 184.93258 * 22 21 20 44 44 H 1.08997 * 109.46718 * 304.92981 * 22 21 20 45 45 H 1.08002 * 120.44511 * 180.22849 * 25 24 23 46 46 H 1.07998 * 120.80473 * 179.77420 * 26 25 24 47 47 H 1.08001 * 120.45135 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1710 3.4646 1.3180 6 1 2.7184 3.8328 0.4630 7 6 1.9649 4.2821 2.4089 8 7 1.2979 3.8338 3.4499 9 14 2.6343 6.0260 2.4090 10 1 2.0431 6.7832 1.2765 11 1 2.2808 6.6919 3.6884 12 1 4.1116 5.9892 2.2622 13 6 1.9955 -0.7660 -1.1375 14 6 1.7649 -2.2593 -0.8974 15 1 0.7174 -2.4478 -0.6618 16 6 2.6773 -2.7689 0.2460 17 6 2.7781 -4.2814 -0.0838 18 1 3.7021 -4.7018 0.3133 19 9 1.6663 -4.9709 0.4117 20 6 2.7889 -4.3007 -1.6268 21 7 2.1743 -3.0408 -2.0838 22 6 1.0270 -3.3031 -2.9629 23 6 -0.0583 -3.9953 -2.1793 24 7 -0.0743 -5.3124 -2.1312 25 6 -1.0090 -5.9545 -1.4492 26 6 -1.9845 -5.2236 -0.7897 27 6 -1.9376 -3.8406 -0.8678 28 7 -0.9694 -3.2677 -1.5648 29 1 -0.3633 -1.0271 -0.0365 30 1 -0.3633 0.4820 0.9076 31 1 -0.3633 0.5450 -0.8713 32 1 3.0798 1.3443 -0.1082 33 1 1.5611 1.9273 -0.8309 34 1 0.5472 2.0845 1.4264 35 1 2.0657 1.5016 2.1492 36 1 1.1532 4.4088 4.2176 37 1 3.0637 -0.5754 -1.2408 38 1 1.4822 -0.4612 -2.0496 39 1 2.2099 -2.6115 1.2182 40 1 3.6575 -2.2939 0.2045 41 1 3.8146 -4.3658 -1.9898 42 1 2.2121 -5.1509 -1.9911 43 1 0.6466 -2.3600 -3.3552 44 1 1.3410 -3.9403 -3.7896 45 1 -1.0143 -7.0338 -1.4108 46 1 -2.7623 -5.7196 -0.2282 47 1 -2.6813 -3.2385 -0.3669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348113037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:46 Heat of formation + Delta-G solvation = -3.215533 kcal Electronic energy + Delta-G solvation = -28365.782646 eV Core-core repulsion = 24497.507068 eV Total energy + Delta-G solvation = -3868.275578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.68783 -42.17067 -40.00695 -38.17219 -35.19924 -34.67663 -34.21132 -32.27489 -31.69042 -30.32837 -27.90435 -27.50729 -26.51893 -25.46516 -24.29876 -23.57932 -22.19021 -21.55501 -20.89678 -18.62572 -18.47210 -17.93202 -17.86874 -17.26601 -16.61529 -16.47227 -16.34034 -16.28385 -16.09159 -15.69987 -15.23484 -15.05800 -14.67929 -14.56431 -14.45127 -14.36036 -14.02214 -13.76488 -13.50066 -13.26335 -12.94242 -12.73897 -12.67097 -12.63534 -12.55055 -12.30265 -12.08613 -12.02415 -11.84481 -11.78922 -11.60943 -11.44137 -11.29338 -11.20536 -10.51951 -10.50497 -10.19391 -9.54696 -9.13363 -8.18164 -6.29395 -0.06675 0.17400 1.40850 1.44284 1.52067 2.40564 2.55250 2.83821 2.97458 3.15055 3.23010 3.29470 3.41400 3.44305 3.71929 3.77158 3.90984 4.14401 4.16696 4.23182 4.26550 4.33742 4.35986 4.41182 4.49119 4.51512 4.64116 4.66407 4.75060 4.79923 4.84137 4.88864 4.92751 4.95769 5.03042 5.08490 5.13327 5.23028 5.47643 5.48216 5.68347 5.77480 5.81069 5.88669 6.06920 6.12181 6.33107 6.36260 6.87724 7.12379 7.39432 8.93814 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.020228 B = 0.002921 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.907846 B = 9584.882051 C =10002.242031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.548 5.548 3 C 0.082 3.918 4 C 0.039 3.961 5 C -0.545 4.545 6 H 0.060 0.940 7 C 0.001 3.999 8 N -0.932 5.932 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.083 3.917 14 C 0.068 3.932 15 H 0.076 0.924 16 C -0.136 4.136 17 C 0.060 3.940 18 H 0.121 0.879 19 F -0.225 7.225 20 C 0.014 3.986 21 N -0.505 5.505 22 C 0.115 3.885 23 C 0.270 3.730 24 N -0.519 5.519 25 C 0.138 3.862 26 C -0.217 4.217 27 C 0.127 3.873 28 N -0.530 5.530 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.019 0.981 32 H 0.065 0.935 33 H 0.018 0.982 34 H -0.008 1.008 35 H -0.008 1.008 36 H 0.263 0.737 37 H 0.076 0.924 38 H 0.031 0.969 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.116 0.884 45 H 0.194 0.806 46 H 0.178 0.822 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 -23.415 -12.267 26.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.272 5.272 3 C -0.045 4.045 4 C 0.001 3.999 5 C -0.583 4.583 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.790 3.210 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.191 1.191 13 C -0.046 4.046 14 C -0.040 4.040 15 H 0.093 0.907 16 C -0.174 4.174 17 C 0.023 3.977 18 H 0.139 0.861 19 F -0.206 7.206 20 C -0.114 4.114 21 N -0.227 5.227 22 C -0.015 4.015 23 C 0.001 3.999 24 N -0.234 5.234 25 C -0.027 4.027 26 C -0.238 4.238 27 C -0.038 4.038 28 N -0.246 5.246 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.036 0.964 34 H 0.011 0.989 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.136 0.864 42 H 0.105 0.895 43 H 0.114 0.886 44 H 0.134 0.866 45 H 0.211 0.789 46 H 0.196 0.804 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.616 -22.873 -12.502 26.117 hybrid contribution -1.699 0.564 0.817 1.968 sum -3.315 -22.309 -11.685 25.401 Atomic orbital electron populations 1.22254 0.87670 1.01355 0.99662 1.61874 1.08005 1.14243 1.43116 1.21978 0.98694 0.86506 0.97321 1.18892 0.94909 0.93613 0.92479 1.21611 1.35388 0.98985 1.02345 0.92177 1.25957 0.95422 1.03232 0.95036 1.70107 1.42013 1.38302 1.06765 0.85495 0.79143 0.78872 0.77489 1.19208 1.20837 1.19071 1.21827 1.00063 0.91949 0.90726 1.22717 0.99537 0.93190 0.88592 0.90671 1.23185 1.01817 0.93664 0.98744 1.23060 0.87058 0.92039 0.95537 0.86142 1.92771 1.57111 1.81330 1.89418 1.23672 1.03209 0.92293 0.92235 1.63777 1.25111 1.16508 1.17336 1.21429 0.85203 1.00187 0.94680 1.24243 0.94169 0.87457 0.94079 1.68260 1.25331 1.10224 1.19577 1.23766 0.87910 1.02405 0.88623 1.23231 1.02444 0.95999 1.02143 1.23731 0.94145 0.94100 0.91780 1.68334 1.04186 1.42412 1.09626 0.90614 0.93409 0.96220 0.91691 0.96403 0.98934 0.98980 0.92801 0.90578 0.95072 0.91472 0.88365 0.86430 0.89491 0.88638 0.86607 0.78873 0.80444 0.79992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 9.13 127.69 1.17 2.59 16 2 N -0.55 -20.74 4.59 -922.46 -4.24 -24.98 16 3 C 0.08 3.62 4.89 86.30 0.42 4.05 16 4 C 0.04 2.11 4.90 29.85 0.15 2.26 16 5 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 6 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 7 C 0.00 0.08 5.46 84.65 0.46 0.55 16 8 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 9 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 C 0.08 2.56 4.74 86.30 0.41 2.97 16 14 C 0.07 1.84 2.25 45.38 0.10 1.94 16 15 H 0.08 2.26 3.38 -2.38 -0.01 2.25 16 16 C -0.14 -3.55 6.18 31.98 0.20 -3.35 16 17 C 0.06 1.28 4.75 31.77 0.15 1.43 16 18 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 19 F -0.23 -5.94 17.19 44.97 0.77 -5.17 16 20 C 0.01 0.26 6.24 86.64 0.54 0.80 16 21 N -0.50 -11.31 5.07 -865.17 -4.38 -15.69 16 22 C 0.11 2.44 5.71 85.56 0.49 2.93 16 23 C 0.27 6.20 5.64 138.75 0.78 6.98 16 24 N -0.52 -10.78 8.87 -187.85 -1.67 -12.44 16 25 C 0.14 2.19 11.30 84.70 0.96 3.15 16 26 C -0.22 -3.10 10.17 22.44 0.23 -2.87 16 27 C 0.13 2.42 11.31 84.70 0.96 3.38 16 28 N -0.53 -12.89 8.47 -187.84 -1.59 -14.48 16 29 H 0.08 2.52 6.43 -2.38 -0.02 2.51 16 30 H 0.05 1.97 6.57 -2.39 -0.02 1.96 16 31 H 0.02 0.70 8.13 -2.39 -0.02 0.68 16 32 H 0.06 2.76 7.86 -2.39 -0.02 2.75 16 33 H 0.02 0.78 8.11 -2.39 -0.02 0.76 16 34 H -0.01 -0.45 6.60 -2.39 -0.02 -0.47 16 35 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 37 H 0.08 2.32 7.69 -2.39 -0.02 2.30 16 38 H 0.03 0.97 8.05 -2.38 -0.02 0.95 16 39 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.10 2.45 7.97 -2.38 -0.02 2.43 16 41 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 1.74 5.93 -2.39 -0.01 1.72 16 43 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.12 2.03 8.13 -2.39 -0.02 2.01 16 45 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 46 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 47 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -71.40 375.88 -0.59 -72.00 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.96 Total: 16.07 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 7.24 Total: -4.68 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -11.59 Total: -125.10 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.77 Total: -5.17 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -71.40 -0.59 -72.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348113037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.780 kcal (2) G-P(sol) polarization free energy of solvation -71.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds