Wall clock time and date at job start Tue Mar 31 2020 12:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99908 * 2 1 4 4 C 1.53005 * 109.46906 * 66.05021 * 3 2 1 5 5 C 1.50701 * 109.46915 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00390 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99933 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00062 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00123 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46915 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46903 * 120.00395 * 9 7 5 12 12 H 1.48498 * 109.47216 * 240.00530 * 9 7 5 13 13 C 1.46901 * 110.99810 * 236.04869 * 2 1 3 14 14 C 1.52997 * 109.47468 * 293.95698 * 13 2 1 15 15 H 1.08995 * 110.46424 * 64.03500 * 14 13 2 16 16 C 1.54377 * 110.41184 * 186.45627 * 14 13 2 17 17 C 1.54259 * 105.06022 * 142.63078 * 16 14 13 18 18 H 1.09000 * 110.32330 * 241.10231 * 17 16 14 19 19 F 1.39897 * 110.32671 * 118.89348 * 17 16 14 20 20 C 1.54387 * 105.06271 * 359.97438 * 17 16 14 21 21 N 1.48559 * 104.58955 * 336.15098 * 20 17 16 22 22 C 1.46904 * 111.00066 * 159.04379 * 21 20 17 23 23 C 1.50698 * 109.47407 * 69.86567 * 22 21 20 24 24 N 1.31791 * 119.12738 * 269.73694 * 23 22 21 25 25 C 1.32333 * 120.82222 * 179.76295 * 24 23 22 26 26 C 1.38604 * 119.09907 * 0.49795 * 25 24 23 27 27 C 1.38600 * 118.39937 * 359.75441 * 26 25 24 28 28 N 1.31800 * 119.11807 * 90.00091 * 23 22 21 29 29 H 1.08994 * 109.47101 * 183.94837 * 1 2 3 30 30 H 1.09000 * 109.46762 * 303.95076 * 1 2 3 31 31 H 1.09002 * 109.47106 * 63.94892 * 1 2 3 32 32 H 1.09003 * 109.47068 * 186.04714 * 3 2 1 33 33 H 1.08996 * 109.47843 * 306.04948 * 3 2 1 34 34 H 1.08990 * 109.46943 * 299.99132 * 4 3 2 35 35 H 1.08996 * 109.47128 * 60.00126 * 4 3 2 36 36 H 0.96994 * 119.99879 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.46889 * 173.95095 * 13 2 1 38 38 H 1.09004 * 109.47169 * 53.95680 * 13 2 1 39 39 H 1.08991 * 110.32683 * 23.73415 * 16 14 13 40 40 H 1.09000 * 110.40374 * 261.56538 * 16 14 13 41 41 H 1.08999 * 110.41133 * 94.92454 * 20 17 16 42 42 H 1.08999 * 110.41276 * 217.37423 * 20 17 16 43 43 H 1.08996 * 109.47493 * 189.87547 * 22 21 20 44 44 H 1.09004 * 109.46624 * 309.87385 * 22 21 20 45 45 H 1.07998 * 120.45144 * 180.27598 * 25 24 23 46 46 H 1.07998 * 120.79745 * 179.73534 * 26 25 24 47 47 H 1.08004 * 120.44181 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 1.3184 5 6 2.1721 3.4641 1.3186 6 1 2.7200 3.8322 0.4639 7 6 1.9662 4.2815 2.4097 8 7 1.2985 3.8334 3.4504 9 14 2.6357 6.0254 2.4098 10 1 3.3436 6.2839 1.1302 11 1 1.5131 6.9865 2.5570 12 1 3.5820 6.1924 3.5420 13 6 1.9954 -0.7659 -1.1376 14 6 1.6314 -2.2426 -0.9706 15 1 0.5499 -2.3743 -1.0020 16 6 2.3095 -3.0917 -2.0671 17 6 2.7108 -4.4057 -1.3658 18 1 3.7918 -4.5400 -1.4033 19 9 2.0640 -5.4927 -1.9635 20 6 2.2419 -4.2397 0.0958 21 7 2.1815 -2.7702 0.3048 22 6 1.3048 -2.4348 1.4349 23 6 1.9556 -2.8707 2.7223 24 7 1.7186 -4.0826 3.1826 25 6 2.2760 -4.5018 4.3073 26 6 3.1097 -3.6436 5.0070 27 6 3.3307 -2.3752 4.4939 28 7 2.7425 -2.0278 3.3606 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3633 0.5739 0.8525 31 1 -0.3633 0.4513 -0.9233 32 1 3.0797 1.3444 -0.1083 33 1 1.5611 1.9274 -0.8308 34 1 0.5473 2.0845 1.4265 35 1 2.0659 1.5014 2.1492 36 1 1.1534 4.4086 4.2178 37 1 3.0797 -0.6610 -1.1757 38 1 1.5611 -0.3871 -2.0629 39 1 3.1935 -2.5811 -2.4489 40 1 1.6099 -3.2938 -2.8782 41 1 1.2558 -4.6839 0.2315 42 1 2.9608 -4.6917 0.7793 43 1 1.1381 -1.3579 1.4583 44 1 0.3500 -2.9477 1.3186 45 1 2.0811 -5.4977 4.6767 46 1 3.5756 -3.9558 5.9300 47 1 3.9747 -1.6799 5.0119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348113040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:51 Heat of formation + Delta-G solvation = 20.596535 kcal Electronic energy + Delta-G solvation = -28122.055966 eV Core-core repulsion = 24254.812957 eV Total energy + Delta-G solvation = -3867.243009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.75606 -40.92927 -39.21299 -36.56407 -33.56383 -33.42802 -32.99700 -30.86224 -30.52674 -28.74118 -26.90692 -26.04866 -24.82728 -24.42018 -22.87503 -22.13943 -21.07955 -20.07360 -19.79703 -17.41572 -17.12749 -16.68249 -16.37540 -16.33687 -15.45924 -15.34972 -14.91335 -14.70402 -14.52834 -14.40384 -14.18339 -13.97059 -13.63639 -13.45559 -13.32140 -12.86676 -12.55411 -12.39361 -12.17798 -11.81997 -11.73072 -11.33543 -11.11130 -11.06229 -10.92434 -10.86485 -10.81316 -10.67841 -10.63354 -10.62188 -10.45642 -9.77956 -9.51972 -9.30794 -9.04799 -9.03685 -8.47235 -8.27249 -7.62427 -5.94035 -3.95496 0.95479 1.21500 3.33893 3.41362 3.45293 3.58986 3.99690 4.10958 4.19140 4.29419 4.36678 4.45943 4.57782 4.65347 4.73805 4.83103 5.02356 5.05786 5.16677 5.32352 5.38656 5.38826 5.42136 5.48214 5.53948 5.66468 5.71393 5.74322 5.79425 5.86404 5.90699 5.95056 6.15782 6.24880 6.31355 6.44872 6.55906 6.56735 6.88553 6.97869 7.05833 7.12856 7.53143 7.60281 7.84781 7.98628 8.17368 8.28773 8.50343 9.12233 9.67526 11.17224 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.003920 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.695264 B = 7142.024184 C = 9131.380632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.531 5.531 3 C 0.066 3.934 4 C 0.028 3.972 5 C -0.518 4.518 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.069 3.931 14 C 0.070 3.930 15 H 0.057 0.943 16 C -0.144 4.144 17 C 0.085 3.915 18 H 0.094 0.906 19 F -0.213 7.213 20 C 0.009 3.991 21 N -0.476 5.476 22 C 0.097 3.903 23 C 0.334 3.666 24 N -0.524 5.524 25 C 0.140 3.860 26 C -0.238 4.238 27 C 0.150 3.850 28 N -0.479 5.479 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.030 0.970 36 H 0.258 0.742 37 H 0.081 0.919 38 H 0.034 0.966 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.155 0.845 44 H 0.050 0.950 45 H 0.162 0.838 46 H 0.143 0.857 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 -19.036 -3.953 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.255 5.255 3 C -0.060 4.060 4 C -0.009 4.009 5 C -0.557 4.557 6 H 0.071 0.929 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.060 4.060 14 C -0.038 4.038 15 H 0.075 0.925 16 C -0.183 4.183 17 C 0.048 3.952 18 H 0.112 0.888 19 F -0.194 7.194 20 C -0.119 4.119 21 N -0.201 5.201 22 C -0.032 4.032 23 C 0.066 3.934 24 N -0.239 5.239 25 C -0.027 4.027 26 C -0.261 4.261 27 C -0.016 4.016 28 N -0.192 5.192 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.052 0.948 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.172 0.828 44 H 0.068 0.932 45 H 0.179 0.821 46 H 0.161 0.839 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.118 -18.684 -4.093 19.244 hybrid contribution -0.299 0.590 0.257 0.710 sum 1.819 -18.094 -3.835 18.585 Atomic orbital electron populations 1.22564 0.88797 1.00641 1.01407 1.62070 1.06721 1.16125 1.40557 1.22320 0.98636 0.84782 1.00286 1.19095 0.96631 0.93979 0.91206 1.21233 1.34829 0.97854 1.01797 0.92896 1.24966 0.95374 0.98261 0.95619 1.69988 1.41014 1.36146 1.06019 0.86594 0.78717 0.85059 0.77948 1.19824 1.21166 1.21053 1.22092 1.01008 0.90866 0.92058 1.22669 0.97306 0.95336 0.88518 0.92466 1.22956 1.02393 0.94816 0.98099 1.22296 0.97204 0.83333 0.92379 0.88769 1.92812 1.83947 1.57422 1.85171 1.23721 1.01888 0.91306 0.95006 1.65207 1.46512 1.06243 1.02150 1.21583 0.91425 1.06374 0.83814 1.23093 0.90027 0.84818 0.95444 1.68283 1.24182 1.17468 1.13967 1.23119 0.90395 0.99474 0.89667 1.22893 1.02777 0.97108 1.03286 1.23389 0.93586 0.93995 0.90665 1.68431 1.07258 1.35955 1.07538 0.92851 0.90071 0.96169 0.92010 0.96417 0.96747 0.95186 0.93214 0.90042 0.94817 0.89234 0.89764 0.92110 0.89726 0.82802 0.93196 0.82057 0.83912 0.81539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 7.92 60.07 0.48 0.70 16 2 N -0.53 -9.15 2.71 -242.91 -0.66 -9.80 16 3 C 0.07 1.37 4.90 -3.82 -0.02 1.35 16 4 C 0.03 0.73 4.90 -27.88 -0.14 0.59 16 5 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 6 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.07 0.96 4.60 -3.82 -0.02 0.94 16 14 C 0.07 0.87 2.29 -66.06 -0.15 0.72 16 15 H 0.06 0.71 6.67 -51.93 -0.35 0.36 16 16 C -0.14 -1.46 6.40 -25.35 -0.16 -1.63 16 17 C 0.08 0.91 4.84 -25.35 -0.12 0.78 16 18 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 19 F -0.21 -2.57 17.10 2.25 0.04 -2.53 16 20 C 0.01 0.12 5.56 -2.18 -0.01 0.10 16 21 N -0.48 -6.58 5.03 -223.55 -1.12 -7.71 16 22 C 0.10 1.48 4.19 -4.97 -0.02 1.46 16 23 C 0.33 5.29 6.72 -157.19 -1.06 4.23 16 24 N -0.52 -7.34 10.07 -10.72 -0.11 -7.45 16 25 C 0.14 1.53 11.31 -17.20 -0.19 1.34 16 26 C -0.24 -2.46 10.17 -39.31 -0.40 -2.86 16 27 C 0.15 1.99 11.30 -17.20 -0.19 1.79 16 28 N -0.48 -8.13 10.33 -10.72 -0.11 -8.24 16 29 H 0.05 0.74 5.57 -51.93 -0.29 0.45 16 30 H 0.08 1.48 6.30 -51.93 -0.33 1.15 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 33 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 34 H 0.01 0.39 6.47 -51.93 -0.34 0.05 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.08 1.18 7.84 -51.93 -0.41 0.77 16 38 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 39 H 0.09 0.83 7.80 -51.93 -0.40 0.42 16 40 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 41 H 0.06 0.77 7.80 -51.93 -0.41 0.37 16 42 H 0.08 1.08 8.12 -51.93 -0.42 0.65 16 43 H 0.15 2.70 4.29 -51.93 -0.22 2.47 16 44 H 0.05 0.72 7.88 -51.93 -0.41 0.31 16 45 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.17 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -32.37 374.65 -10.34 -42.71 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.32 Total: 0.61 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.42 Total: -3.84 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -1.26 Total: -59.29 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.37 -10.34 -42.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348113040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.305 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds