Wall clock time and date at job start Tue Mar 31 2020 12:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99908 * 2 1 4 4 C 1.53005 * 109.46906 * 66.05021 * 3 2 1 5 5 C 1.50701 * 109.46915 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00390 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99933 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00062 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00123 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46915 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46903 * 120.00395 * 9 7 5 12 12 H 1.48498 * 109.47216 * 240.00530 * 9 7 5 13 13 C 1.46901 * 110.99810 * 236.04869 * 2 1 3 14 14 C 1.52997 * 109.47468 * 293.95698 * 13 2 1 15 15 H 1.08995 * 110.46424 * 64.03500 * 14 13 2 16 16 C 1.54377 * 110.41184 * 186.45627 * 14 13 2 17 17 C 1.54259 * 105.06022 * 142.63078 * 16 14 13 18 18 H 1.09000 * 110.32330 * 241.10231 * 17 16 14 19 19 F 1.39897 * 110.32671 * 118.89348 * 17 16 14 20 20 C 1.54387 * 105.06271 * 359.97438 * 17 16 14 21 21 N 1.48559 * 104.58955 * 336.15098 * 20 17 16 22 22 C 1.46904 * 111.00066 * 159.04379 * 21 20 17 23 23 C 1.50698 * 109.47407 * 69.86567 * 22 21 20 24 24 N 1.31791 * 119.12738 * 269.73694 * 23 22 21 25 25 C 1.32333 * 120.82222 * 179.76295 * 24 23 22 26 26 C 1.38604 * 119.09907 * 0.49795 * 25 24 23 27 27 C 1.38600 * 118.39937 * 359.75441 * 26 25 24 28 28 N 1.31800 * 119.11807 * 90.00091 * 23 22 21 29 29 H 1.08994 * 109.47101 * 183.94837 * 1 2 3 30 30 H 1.09000 * 109.46762 * 303.95076 * 1 2 3 31 31 H 1.09002 * 109.47106 * 63.94892 * 1 2 3 32 32 H 1.09003 * 109.47068 * 186.04714 * 3 2 1 33 33 H 1.08996 * 109.47843 * 306.04948 * 3 2 1 34 34 H 1.08990 * 109.46943 * 299.99132 * 4 3 2 35 35 H 1.08996 * 109.47128 * 60.00126 * 4 3 2 36 36 H 0.96994 * 119.99879 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.46889 * 173.95095 * 13 2 1 38 38 H 1.09004 * 109.47169 * 53.95680 * 13 2 1 39 39 H 1.08991 * 110.32683 * 23.73415 * 16 14 13 40 40 H 1.09000 * 110.40374 * 261.56538 * 16 14 13 41 41 H 1.08999 * 110.41133 * 94.92454 * 20 17 16 42 42 H 1.08999 * 110.41276 * 217.37423 * 20 17 16 43 43 H 1.08996 * 109.47493 * 189.87547 * 22 21 20 44 44 H 1.09004 * 109.46624 * 309.87385 * 22 21 20 45 45 H 1.07998 * 120.45144 * 180.27598 * 25 24 23 46 46 H 1.07998 * 120.79745 * 179.73534 * 26 25 24 47 47 H 1.08004 * 120.44181 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 1.3184 5 6 2.1721 3.4641 1.3186 6 1 2.7200 3.8322 0.4639 7 6 1.9662 4.2815 2.4097 8 7 1.2985 3.8334 3.4504 9 14 2.6357 6.0254 2.4098 10 1 3.3436 6.2839 1.1302 11 1 1.5131 6.9865 2.5570 12 1 3.5820 6.1924 3.5420 13 6 1.9954 -0.7659 -1.1376 14 6 1.6314 -2.2426 -0.9706 15 1 0.5499 -2.3743 -1.0020 16 6 2.3095 -3.0917 -2.0671 17 6 2.7108 -4.4057 -1.3658 18 1 3.7918 -4.5400 -1.4033 19 9 2.0640 -5.4927 -1.9635 20 6 2.2419 -4.2397 0.0958 21 7 2.1815 -2.7702 0.3048 22 6 1.3048 -2.4348 1.4349 23 6 1.9556 -2.8707 2.7223 24 7 1.7186 -4.0826 3.1826 25 6 2.2760 -4.5018 4.3073 26 6 3.1097 -3.6436 5.0070 27 6 3.3307 -2.3752 4.4939 28 7 2.7425 -2.0278 3.3606 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3633 0.5739 0.8525 31 1 -0.3633 0.4513 -0.9233 32 1 3.0797 1.3444 -0.1083 33 1 1.5611 1.9274 -0.8308 34 1 0.5473 2.0845 1.4265 35 1 2.0659 1.5014 2.1492 36 1 1.1534 4.4086 4.2178 37 1 3.0797 -0.6610 -1.1757 38 1 1.5611 -0.3871 -2.0629 39 1 3.1935 -2.5811 -2.4489 40 1 1.6099 -3.2938 -2.8782 41 1 1.2558 -4.6839 0.2315 42 1 2.9608 -4.6917 0.7793 43 1 1.1381 -1.3579 1.4583 44 1 0.3500 -2.9477 1.3186 45 1 2.0811 -5.4977 4.6767 46 1 3.5756 -3.9558 5.9300 47 1 3.9747 -1.6799 5.0119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348113040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:50 Heat of formation + Delta-G solvation = -0.718558 kcal Electronic energy + Delta-G solvation = -28122.980258 eV Core-core repulsion = 24254.812957 eV Total energy + Delta-G solvation = -3868.167301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.65236 -41.93983 -40.29769 -37.95817 -35.11888 -34.59106 -34.38470 -32.20002 -31.76494 -30.19327 -28.10997 -27.31615 -26.45040 -25.39457 -24.27837 -23.35601 -22.07144 -21.49251 -21.11025 -18.58740 -18.43133 -18.01606 -17.58971 -17.35015 -16.61559 -16.48032 -16.37711 -16.06596 -15.80984 -15.60934 -15.36843 -15.08373 -14.77763 -14.61664 -14.36819 -14.14272 -14.12036 -13.78775 -13.54780 -13.23707 -12.88826 -12.81678 -12.66892 -12.52608 -12.50770 -12.22132 -11.99481 -11.84040 -11.74070 -11.72674 -11.61462 -11.56087 -11.23364 -11.12507 -10.49493 -10.44982 -10.08450 -9.54018 -8.99001 -8.15223 -6.25621 -0.02238 0.25654 1.41041 1.41560 1.54622 2.42822 2.58957 2.98619 3.01667 3.17797 3.18268 3.34600 3.44733 3.49210 3.78606 3.80950 3.94318 4.07802 4.20762 4.27499 4.30040 4.32806 4.35808 4.43157 4.49278 4.51244 4.57672 4.66174 4.73604 4.76179 4.82741 4.91624 4.93257 4.96901 5.06393 5.13504 5.17525 5.22628 5.52449 5.54749 5.75888 5.83995 5.85758 5.91275 6.16202 6.17371 6.37843 6.39995 6.92410 7.26214 7.42813 8.96829 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.003920 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.695264 B = 7142.024184 C = 9131.380632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.540 5.540 3 C 0.085 3.915 4 C 0.041 3.959 5 C -0.540 4.540 6 H 0.058 0.942 7 C 0.003 3.997 8 N -0.930 5.930 9 Si 0.962 3.038 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.071 3.929 14 C 0.072 3.928 15 H 0.059 0.941 16 C -0.135 4.135 17 C 0.089 3.911 18 H 0.112 0.888 19 F -0.219 7.219 20 C 0.017 3.983 21 N -0.488 5.488 22 C 0.104 3.896 23 C 0.314 3.686 24 N -0.536 5.536 25 C 0.135 3.865 26 C -0.216 4.216 27 C 0.125 3.875 28 N -0.530 5.530 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.031 0.969 32 H 0.058 0.942 33 H 0.021 0.979 34 H -0.008 1.008 35 H -0.009 1.009 36 H 0.261 0.739 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.127 0.873 44 H 0.051 0.949 45 H 0.203 0.797 46 H 0.186 0.814 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.902 -20.128 -4.726 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.264 5.264 3 C -0.042 4.042 4 C 0.004 3.996 5 C -0.579 4.579 6 H 0.076 0.924 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.787 3.213 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.057 4.057 14 C -0.037 4.037 15 H 0.077 0.923 16 C -0.174 4.174 17 C 0.052 3.948 18 H 0.129 0.871 19 F -0.200 7.200 20 C -0.112 4.112 21 N -0.213 5.213 22 C -0.026 4.026 23 C 0.046 3.954 24 N -0.251 5.251 25 C -0.031 4.031 26 C -0.238 4.238 27 C -0.040 4.040 28 N -0.244 5.244 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.010 0.990 35 H 0.009 0.991 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.145 0.855 44 H 0.069 0.931 45 H 0.220 0.780 46 H 0.203 0.797 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.070 -19.794 -4.877 20.615 hybrid contribution -0.594 0.835 0.608 1.191 sum 2.476 -18.959 -4.269 19.591 Atomic orbital electron populations 1.22456 0.88089 1.01554 1.00426 1.61959 1.07428 1.14118 1.42882 1.21906 0.98474 0.86617 0.97250 1.18863 0.94677 0.93427 0.92674 1.21665 1.34985 0.99055 1.02160 0.92366 1.25910 0.95504 1.02981 0.95101 1.70133 1.42202 1.37971 1.06770 0.85444 0.78165 0.79255 0.78426 1.18571 1.20464 1.20488 1.22141 1.00719 0.91495 0.91298 1.22678 0.97695 0.94434 0.88851 0.92258 1.22931 1.03094 0.93920 0.97411 1.22328 0.97979 0.83340 0.91123 0.87061 1.92804 1.84205 1.57819 1.85141 1.23622 1.01373 0.90113 0.96091 1.65176 1.46421 1.07393 1.02262 1.21358 0.91866 1.04614 0.84758 1.23059 0.90857 0.85632 0.95865 1.68295 1.24766 1.16637 1.15380 1.23891 0.89490 1.01112 0.88595 1.23273 1.01275 0.95288 1.03961 1.23787 0.93996 0.95926 0.90265 1.68341 1.08943 1.37539 1.09595 0.90652 0.93240 0.95098 0.92299 0.96099 0.98974 0.99085 0.92997 0.90406 0.93120 0.87866 0.88324 0.92768 0.90461 0.85504 0.93101 0.78010 0.79686 0.80356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 7.92 127.69 1.01 1.76 16 2 N -0.54 -19.08 2.71 -922.44 -2.50 -21.58 16 3 C 0.08 3.62 4.90 86.31 0.42 4.04 16 4 C 0.04 2.23 4.90 29.85 0.15 2.38 16 5 C -0.54 -31.34 9.11 25.60 0.23 -31.10 16 6 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 7 C 0.00 0.16 5.46 84.65 0.46 0.62 16 8 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 9 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 10 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.07 1.95 4.60 86.30 0.40 2.34 16 14 C 0.07 1.69 2.29 45.06 0.10 1.80 16 15 H 0.06 1.38 6.67 -2.39 -0.02 1.37 16 16 C -0.14 -2.42 6.40 31.49 0.20 -2.22 16 17 C 0.09 1.73 4.84 31.49 0.15 1.88 16 18 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 19 F -0.22 -4.83 17.10 44.97 0.77 -4.06 16 20 C 0.02 0.39 5.56 86.45 0.48 0.87 16 21 N -0.49 -13.44 5.03 -861.18 -4.33 -17.77 16 22 C 0.10 3.28 4.19 85.56 0.36 3.64 16 23 C 0.31 10.27 6.72 138.75 0.93 11.20 16 24 N -0.54 -14.83 10.07 -187.84 -1.89 -16.72 16 25 C 0.13 2.70 11.31 84.70 0.96 3.66 16 26 C -0.22 -4.05 10.17 22.44 0.23 -3.82 16 27 C 0.13 3.35 11.30 84.70 0.96 4.31 16 28 N -0.53 -18.85 10.33 -187.84 -1.94 -20.80 16 29 H 0.07 2.11 5.57 -2.39 -0.01 2.10 16 30 H 0.05 1.93 6.30 -2.39 -0.02 1.91 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 33 H 0.02 0.87 8.12 -2.39 -0.02 0.85 16 34 H -0.01 -0.47 6.47 -2.39 -0.02 -0.48 16 35 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 36 H 0.26 15.20 8.31 -92.71 -0.77 14.42 16 37 H 0.08 2.18 7.84 -2.39 -0.02 2.17 16 38 H 0.05 1.23 8.12 -2.38 -0.02 1.21 16 39 H 0.10 1.61 7.80 -2.39 -0.02 1.59 16 40 H 0.10 1.53 8.04 -2.39 -0.02 1.51 16 41 H 0.05 1.35 7.80 -2.39 -0.02 1.33 16 42 H 0.08 1.93 8.12 -2.39 -0.02 1.91 16 43 H 0.13 4.73 4.29 -2.39 -0.01 4.72 16 44 H 0.05 1.52 7.88 -2.38 -0.02 1.50 16 45 H 0.20 2.24 8.06 -2.91 -0.02 2.21 16 46 H 0.19 1.80 8.06 -2.91 -0.02 1.78 16 47 H 0.18 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -73.47 374.65 0.42 -73.04 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.96 Total: 17.00 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 7.04 Total: 1.35 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -10.38 Total: -134.30 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.77 Total: -4.06 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -73.47 0.42 -73.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348113040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.325 kcal (2) G-P(sol) polarization free energy of solvation -73.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds