Wall clock time and date at job start Tue Mar 31 2020 12:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.38998 * 120.00169 * 180.02562 * 2 1 3 5 5 C 1.39074 * 119.68805 * 4.99091 * 4 2 1 6 6 C 1.38376 * 119.15493 * 179.97438 * 5 4 2 7 7 C 1.38750 * 118.53686 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.34691 * 179.97438 * 7 6 5 9 9 N 1.46903 * 109.47307 * 105.00028 * 8 7 6 10 10 C 1.46959 * 110.99789 * 293.79756 * 9 8 7 11 11 C 1.53049 * 109.36534 * 176.81335 * 10 9 8 12 12 N 1.46951 * 109.36627 * 58.40386 * 11 10 9 13 13 C 1.46903 * 111.00222 * 176.81528 * 12 11 10 14 14 C 1.50699 * 109.46677 * 293.79679 * 13 12 11 15 15 H 1.08003 * 120.00306 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99987 * 180.02562 * 14 13 12 17 17 N 1.31524 * 119.99863 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00311 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47357 * 89.99822 * 18 16 14 20 20 H 1.48502 * 109.47497 * 209.99982 * 18 16 14 21 21 H 1.48507 * 109.47054 * 329.99947 * 18 16 14 22 22 C 1.46959 * 110.87690 * 300.67945 * 12 11 10 23 23 C 1.46960 * 111.00264 * 170.00359 * 9 8 7 24 24 C 1.38371 * 119.30907 * 359.97438 * 7 6 5 25 25 F 1.35093 * 119.60620 * 179.97438 * 24 7 6 26 26 N 1.32147 * 120.78770 * 359.75067 * 24 7 6 27 27 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 28 28 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 29 29 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 30 30 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 32 32 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 33 33 H 1.08004 * 120.42060 * 359.96270 * 5 4 2 34 34 H 1.07998 * 120.73065 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47152 * 224.99510 * 8 7 6 36 36 H 1.09000 * 109.47243 * 345.00013 * 8 7 6 37 37 H 1.09001 * 109.49045 * 296.77862 * 10 9 8 38 38 H 1.08998 * 109.49074 * 56.84645 * 10 9 8 39 39 H 1.09001 * 109.48815 * 298.43406 * 11 10 9 40 40 H 1.09003 * 109.48809 * 178.37044 * 11 10 9 41 41 H 1.08996 * 109.46848 * 53.79420 * 13 12 11 42 42 H 1.08995 * 109.47216 * 173.79801 * 13 12 11 43 43 H 0.96997 * 119.99712 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.49045 * 299.35473 * 22 12 11 45 45 H 1.09009 * 109.49140 * 179.29169 * 22 12 11 46 46 H 1.09003 * 109.48159 * 303.15058 * 23 9 8 47 47 H 1.09001 * 109.49131 * 63.21569 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1600 -1.2037 -0.0005 5 6 1.4621 -2.4020 -0.1062 6 6 2.1651 -3.5939 -0.1061 7 6 3.5478 -3.5479 0.0005 8 6 4.3538 -4.8212 0.0053 9 7 5.0183 -4.9851 -1.2946 10 6 4.0349 -5.2016 -2.3651 11 6 4.7598 -5.2879 -3.7102 12 7 5.7374 -6.3842 -3.6675 13 6 6.4018 -6.5481 -4.9674 14 6 5.3962 -7.0086 -5.9910 15 1 4.3666 -7.1644 -5.7044 16 6 5.7907 -7.2321 -7.2930 17 7 7.0446 -7.0429 -7.6419 18 14 4.5444 -7.8035 -8.5616 19 1 3.9249 -6.6221 -9.2142 20 1 5.2263 -8.6342 -9.5865 21 1 3.4909 -8.6087 -7.8928 22 6 6.7207 -6.1677 -2.5971 23 6 5.9959 -6.0815 -1.2519 24 6 4.1788 -2.3207 0.1024 25 9 5.5247 -2.2689 0.2070 26 7 3.4810 -1.1985 0.0941 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5139 30 1 1.4892 2.0973 0.0005 31 1 2.8242 1.3264 0.8899 32 1 2.8241 1.3265 -0.8900 33 1 0.3851 -2.4023 -0.1870 34 1 1.6489 -4.5391 -0.1865 35 1 5.1050 -4.7727 0.7936 36 1 3.6928 -5.6690 0.1849 37 1 3.4967 -6.1316 -2.1818 38 1 3.3297 -4.3707 -2.3847 39 1 5.2758 -4.3480 -3.9062 40 1 4.0353 -5.4774 -4.5023 41 1 6.8282 -5.5950 -5.2802 42 1 7.1956 -7.2897 -4.8788 43 1 7.3221 -7.1997 -8.5580 44 1 7.2590 -5.2377 -2.7804 45 1 7.4260 -6.9986 -2.5775 46 1 6.7204 -5.8919 -0.4599 47 1 5.4799 -7.0214 -1.0560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233115945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:35 Heat of formation + Delta-G solvation = 26.202329 kcal Electronic energy + Delta-G solvation = -27481.042472 eV Core-core repulsion = 23614.042548 eV Total energy + Delta-G solvation = -3866.999924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.86512 -40.49366 -38.69805 -36.85790 -35.15049 -32.99361 -32.30893 -30.90093 -30.32217 -28.51576 -28.25348 -26.46850 -24.87539 -23.60314 -23.27314 -22.66102 -21.48794 -21.13739 -19.10744 -18.09083 -17.53913 -16.33552 -16.26027 -16.16486 -15.72295 -15.41354 -15.16104 -15.00369 -14.54741 -14.38409 -14.12294 -13.81749 -13.66503 -13.46509 -13.27155 -13.16648 -12.99226 -12.83115 -12.69293 -12.40300 -12.15916 -11.92991 -11.83269 -11.56866 -11.11787 -10.82799 -10.68737 -10.59805 -10.38981 -10.27523 -10.08174 -9.79724 -9.70074 -9.64171 -9.13593 -8.41030 -8.09175 -7.77874 -7.17325 -5.99496 -4.00797 0.97836 1.14131 2.48844 3.33249 3.39246 3.43390 3.51651 3.72477 4.21179 4.44841 4.47077 4.55479 4.69877 4.80640 4.89225 4.97781 5.01563 5.02888 5.23340 5.30990 5.35176 5.35934 5.41743 5.51991 5.57877 5.62920 5.70294 5.73571 5.84211 5.89792 5.95689 6.04448 6.12720 6.26770 6.37301 6.50449 6.51521 6.65602 6.74396 7.01609 7.24444 7.27919 7.40802 7.43982 7.72091 7.83616 8.13561 8.25852 8.59866 9.06756 9.63167 11.11462 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.015292 B = 0.002869 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.572535 B = 9757.726894 C =10689.903173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.618 5.618 3 C 0.104 3.896 4 C 0.432 3.568 5 C -0.250 4.250 6 C -0.002 4.002 7 C -0.207 4.207 8 C 0.108 3.892 9 N -0.535 5.535 10 C 0.060 3.940 11 C 0.068 3.932 12 N -0.538 5.538 13 C 0.193 3.807 14 C -0.506 4.506 15 H 0.062 0.938 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.056 3.944 23 C 0.063 3.937 24 C 0.379 3.621 25 F -0.103 7.103 26 N -0.575 5.575 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.067 0.933 39 H 0.027 0.973 40 H 0.085 0.915 41 H -0.009 1.009 42 H 0.030 0.970 43 H 0.261 0.739 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.135 12.331 19.827 26.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.332 5.332 3 C -0.039 4.039 4 C 0.197 3.803 5 C -0.275 4.275 6 C -0.028 4.028 7 C -0.213 4.213 8 C -0.020 4.020 9 N -0.260 5.260 10 C -0.068 4.068 11 C -0.060 4.060 12 N -0.264 5.264 13 C 0.068 3.932 14 C -0.545 4.545 15 H 0.080 0.920 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.073 4.073 23 C -0.065 4.065 24 C 0.225 3.775 25 F -0.082 7.082 26 N -0.298 5.298 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.045 0.955 40 H 0.103 0.897 41 H 0.009 0.991 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.609 13.263 19.725 26.907 hybrid contribution -0.659 -0.871 -0.918 1.426 sum -13.268 12.392 18.807 26.140 Atomic orbital electron populations 1.21757 0.78026 1.03093 1.01819 1.46246 1.05184 1.03048 1.78701 1.21537 0.96451 0.83538 1.02368 1.17743 0.86325 0.86137 0.90088 1.21369 1.01224 0.91304 1.13619 1.21139 0.92194 0.98344 0.91167 1.20199 0.94662 0.94855 1.11630 1.20730 0.96217 0.92382 0.92678 1.62196 1.16398 1.44245 1.03195 1.22227 0.93692 0.99246 0.91598 1.21967 0.96184 0.92742 0.95137 1.62291 1.15942 1.41332 1.06806 1.19696 0.94347 0.95655 0.83469 1.21156 0.95786 1.44480 0.93042 0.91965 1.24996 0.95330 0.95818 0.98525 1.69967 1.15709 1.49680 1.18481 0.86513 0.81265 0.78641 0.81079 1.20766 1.21273 1.19800 1.22061 0.94470 0.99731 0.91004 1.22146 0.94504 0.91727 0.98098 1.17377 0.78305 0.88205 0.93616 1.91636 1.27506 1.96832 1.92199 1.66262 1.07724 1.31235 1.24628 0.92679 0.90903 0.90970 0.91179 0.92332 0.92352 0.84415 0.84073 0.90018 0.93661 0.94366 0.91480 0.95468 0.89710 0.99101 0.95224 0.92955 0.95100 0.90997 0.91092 0.94250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.51 10.02 59.85 0.60 1.11 16 2 N -0.62 -5.61 3.39 -189.67 -0.64 -6.26 16 3 C 0.10 0.84 10.18 59.85 0.61 1.45 16 4 C 0.43 5.01 7.37 -155.01 -1.14 3.87 16 5 C -0.25 -2.44 9.19 -39.22 -0.36 -2.80 16 6 C 0.00 -0.03 9.18 -39.34 -0.36 -0.39 16 7 C -0.21 -2.57 4.44 -104.38 -0.46 -3.03 16 8 C 0.11 1.34 4.79 -4.97 -0.02 1.32 16 9 N -0.54 -8.28 4.70 -235.91 -1.11 -9.39 16 10 C 0.06 0.99 5.42 -3.77 -0.02 0.97 16 11 C 0.07 1.41 5.43 -3.77 -0.02 1.39 16 12 N -0.54 -12.05 4.70 -235.91 -1.11 -13.16 16 13 C 0.19 5.19 4.72 -4.97 -0.02 5.17 16 14 C -0.51 -14.43 8.47 -34.44 -0.29 -14.72 16 15 H 0.06 1.75 7.13 -52.48 -0.37 1.37 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 18 Si 0.90 21.85 29.54 -169.99 -5.02 16.82 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 23 C 0.06 0.98 5.61 -3.77 -0.02 0.96 16 24 C 0.38 5.43 8.36 -17.37 -0.15 5.28 16 25 F -0.10 -1.60 16.77 2.25 0.04 -1.56 16 26 N -0.58 -8.09 9.58 -12.78 -0.12 -8.22 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.25 7.92 -51.93 -0.41 -0.16 16 29 H 0.07 0.32 6.38 -51.93 -0.33 -0.01 16 30 H 0.07 0.36 7.79 -51.93 -0.40 -0.04 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.14 0.96 6.26 -52.48 -0.33 0.63 16 34 H 0.14 1.11 8.04 -52.49 -0.42 0.69 16 35 H 0.08 0.96 7.97 -51.93 -0.41 0.54 16 36 H 0.05 0.50 7.97 -51.93 -0.41 0.09 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.04 6.72 -51.93 -0.35 0.69 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.84 6.79 -51.93 -0.35 1.49 16 41 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 42 H 0.03 0.84 8.03 -51.93 -0.42 0.43 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 1.32 8.07 -51.92 -0.42 0.90 16 46 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -33.11 378.12 -10.89 -44.00 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -7.57 Total: -4.61 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -1.78 Total: 3.09 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: -2.25 Total: -63.45 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.11 -10.89 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233115945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.198 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds